Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35705 * 116.99839 * 2 1 4 4 C 1.38819 * 120.14619 * 270.01624 * 3 2 1 5 5 F 1.35105 * 119.94246 * 0.02562 * 4 3 2 6 6 C 1.38271 * 120.11553 * 179.97438 * 4 3 2 7 7 C 1.38442 * 120.41047 * 359.97438 * 6 4 3 8 8 C 1.38090 * 120.28752 * 359.78439 * 7 6 4 9 9 F 1.35108 * 120.05997 * 180.23668 * 8 7 6 10 10 C 1.39990 * 119.87920 * 0.46768 * 8 7 6 11 11 C 1.47388 * 120.20019 * 179.79270 * 10 8 7 12 12 O 1.21608 * 119.99789 * 269.71745 * 11 10 8 13 13 N 1.34774 * 120.00433 * 89.72190 * 11 10 8 14 14 C 1.48214 * 119.96945 * 179.97438 * 13 11 10 15 15 C 1.47136 * 110.34051 * 102.50007 * 14 13 11 16 16 C 1.53854 * 111.83715 * 58.27604 * 15 14 13 17 17 N 1.43462 * 107.97464 * 281.68919 * 16 15 14 18 18 C 1.36943 * 118.94089 * 273.59813 * 17 16 15 19 19 H 1.07999 * 119.99566 * 25.93180 * 18 17 16 20 20 C 1.38807 * 119.99777 * 205.93686 * 18 17 16 21 21 N 1.31618 * 120.00385 * 13.79941 * 20 18 17 22 22 Si 1.86806 * 119.99728 * 193.80079 * 20 18 17 23 23 H 1.48501 * 109.47153 * 89.99930 * 22 20 18 24 24 H 1.48497 * 109.47030 * 209.99597 * 22 20 18 25 25 H 1.48498 * 109.47269 * 329.99849 * 22 20 18 26 26 C 1.48850 * 122.11888 * 93.61730 * 17 16 15 27 27 C 1.43628 * 119.96590 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47213 * 300.00560 * 1 2 3 30 30 H 1.09005 * 109.46513 * 60.00328 * 1 2 3 31 31 H 1.08000 * 119.79134 * 179.97438 * 6 4 3 32 32 H 1.08004 * 119.85471 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.32430 * 222.75851 * 14 13 11 34 34 H 1.08998 * 109.32751 * 342.22823 * 14 13 11 35 35 H 1.09005 * 109.00802 * 178.90382 * 15 14 13 36 36 H 1.09001 * 109.00599 * 297.68653 * 15 14 13 37 37 H 1.09001 * 109.76456 * 162.06599 * 16 15 14 38 38 H 1.08997 * 109.78823 * 41.32995 * 16 15 14 39 39 H 0.97001 * 120.00546 * 180.02562 * 21 20 18 40 40 H 1.08998 * 109.47966 * 200.63567 * 26 17 16 41 41 H 1.09002 * 109.48816 * 80.61015 * 26 17 16 42 42 H 1.08998 * 108.87411 * 31.44024 * 27 13 11 43 43 H 1.09003 * 108.87083 * 149.88366 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3613 1.8305 -1.2004 5 9 2.0547 1.2306 -2.3715 6 6 2.9885 3.0628 -1.1997 7 6 3.3057 3.6869 -0.0054 8 6 2.9944 3.0863 1.1985 9 9 3.3018 3.7018 2.3613 10 6 2.3642 1.8364 1.2119 11 6 2.0329 1.1868 2.4927 12 8 2.8346 0.4407 3.0214 13 7 0.8414 1.4196 3.0781 14 6 0.5088 0.7656 4.3659 15 6 0.6593 1.7181 5.4772 16 6 -0.2344 2.9569 5.2941 17 7 0.4000 3.8239 4.3433 18 6 1.3304 4.7258 4.7866 19 1 1.8835 4.5294 5.6931 20 6 1.5623 5.8922 4.0707 21 7 0.7187 6.2675 3.1328 22 14 3.0718 6.9293 4.4386 23 1 4.2022 6.4772 3.5883 24 1 2.7749 8.3554 4.1501 25 1 3.4383 6.7797 5.8699 26 6 0.0792 3.7751 2.8906 27 6 -0.1052 2.3005 2.4529 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 3.2325 3.5413 -2.1367 32 1 3.7960 4.6492 -0.0153 33 1 -0.5206 0.4086 4.3338 34 1 1.1768 -0.0812 4.5235 35 1 0.3911 1.2211 6.4095 36 1 1.7002 2.0367 5.5331 37 1 -0.3470 3.4743 6.2469 38 1 -1.2129 2.6542 4.9213 39 1 0.8809 7.0824 2.6322 40 1 0.8946 4.2236 2.3231 41 1 -0.8414 4.3277 2.7027 42 1 0.0139 2.2357 1.3713 43 1 -1.1130 1.9782 2.7148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981737590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = -104.860712 kcal Electronic energy + Delta-G solvation = -32723.599498 eV Core-core repulsion = 28213.336433 eV Total energy + Delta-G solvation = -4510.263065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.05826 -50.01887 -41.86751 -40.22475 -38.65897 -38.32316 -35.99640 -34.45226 -32.79565 -32.13378 -30.99614 -29.30577 -28.17862 -27.22805 -25.48710 -25.47509 -23.75080 -23.31131 -21.49707 -20.70576 -19.35223 -19.12148 -18.86097 -18.29259 -17.93326 -17.60794 -17.28439 -17.00961 -16.76989 -16.47643 -16.10920 -15.97172 -15.74499 -15.59215 -15.44756 -15.34800 -14.90175 -14.63707 -14.27065 -14.01368 -13.92821 -13.79522 -13.44288 -13.21466 -13.12491 -12.95825 -12.84082 -12.55411 -12.45109 -12.33452 -12.07865 -11.75917 -11.71085 -11.50495 -11.36678 -11.04462 -10.45287 -10.25307 -9.72345 -9.68282 -8.58705 -7.80119 -5.22084 -0.46980 -0.34836 1.30506 1.41532 1.45481 1.50285 1.84202 1.98482 2.32045 2.54134 2.93020 3.08304 3.27256 3.36026 3.61605 3.69318 3.77655 3.96397 4.06501 4.15350 4.23391 4.31197 4.31642 4.43601 4.51398 4.55423 4.57981 4.64600 4.71570 4.75032 4.79473 4.87193 4.90589 5.02159 5.23821 5.27976 5.36832 5.45974 5.63911 5.72090 5.75908 6.09888 6.30511 6.46604 6.96192 7.25082 8.00478 8.38426 9.24924 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.006283 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.188127 B = 4455.547882 C = 5775.751566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.116 3.884 4 C 0.066 3.934 5 F -0.122 7.122 6 C -0.071 4.071 7 C -0.128 4.128 8 C 0.124 3.876 9 F -0.129 7.129 10 C -0.171 4.171 11 C 0.573 3.427 12 O -0.576 6.576 13 N -0.570 5.570 14 C 0.126 3.874 15 C -0.157 4.157 16 C 0.158 3.842 17 N -0.601 5.601 18 C -0.248 4.248 19 H 0.043 0.957 20 C -0.021 4.021 21 N -0.923 5.923 22 Si 0.930 3.070 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.170 3.830 27 C 0.084 3.916 28 H 0.124 0.876 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.198 0.802 32 H 0.173 0.827 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.023 0.977 37 H 0.037 0.963 38 H 0.061 0.939 39 H 0.248 0.752 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.074 0.926 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 -9.258 -10.310 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.070 3.930 4 C 0.046 3.954 5 F -0.101 7.101 6 C -0.090 4.090 7 C -0.147 4.147 8 C 0.104 3.896 9 F -0.107 7.107 10 C -0.175 4.175 11 C 0.360 3.640 12 O -0.457 6.457 13 N -0.299 5.299 14 C 0.005 3.995 15 C -0.197 4.197 16 C 0.031 3.969 17 N -0.323 5.323 18 C -0.378 4.378 19 H 0.061 0.939 20 C -0.217 4.217 21 N -0.570 5.570 22 Si 0.760 3.240 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.208 1.208 26 C 0.044 3.956 27 C -0.041 4.041 28 H 0.142 0.858 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.216 0.784 32 H 0.190 0.810 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.093 0.907 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.145 -9.703 -10.092 14.348 hybrid contribution 1.007 1.132 0.650 1.649 sum -2.137 -8.570 -9.441 12.929 Atomic orbital electron populations 1.23541 0.75922 1.05895 1.02063 1.86010 1.22613 1.22895 1.94109 1.18277 0.98292 0.87028 0.89393 1.17786 1.03907 0.93525 0.80169 1.91527 1.91206 1.83154 1.44165 1.21369 0.95314 0.91862 1.00427 1.21294 1.01949 1.02466 0.88986 1.17988 0.98250 0.90061 0.83322 1.91671 1.90196 1.81742 1.47072 1.20078 1.06930 0.95777 0.94746 1.17921 0.81910 0.80110 0.84012 1.90717 1.49332 1.39486 1.66155 1.47467 1.15224 1.44328 1.22901 1.20804 1.02344 0.94943 0.81389 1.21714 1.00610 0.98668 0.98749 1.20463 0.93978 0.89786 0.92680 1.43773 1.46005 1.40202 1.02293 1.19121 1.13015 0.97470 1.08240 0.93869 1.25221 0.99521 0.97209 0.99752 1.70077 1.35731 1.24302 1.26908 0.85843 0.81876 0.78516 0.77748 1.21432 1.21635 1.20850 1.21765 0.99090 0.90629 0.84132 1.22228 0.93151 0.91684 0.97014 0.85809 0.92798 0.91402 0.78445 0.80975 0.87466 0.90913 0.89159 0.95763 0.94414 0.92094 0.94216 0.92703 0.95830 0.90740 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.88 113.37 1.23 1.62 16 2 O -0.34 -10.05 9.73 -90.26 -0.88 -10.93 16 3 C 0.12 3.58 5.30 22.87 0.12 3.71 16 4 C 0.07 1.68 7.30 22.42 0.16 1.84 16 5 F -0.12 -2.90 17.11 44.97 0.77 -2.13 16 6 C -0.07 -1.51 10.00 22.33 0.22 -1.29 16 7 C -0.13 -3.50 10.00 22.28 0.22 -3.28 16 8 C 0.12 4.62 6.33 22.66 0.14 4.76 16 9 F -0.13 -5.98 16.19 44.97 0.73 -5.25 16 10 C -0.17 -6.25 3.92 -19.98 -0.08 -6.33 16 11 C 0.57 23.43 6.28 86.65 0.54 23.97 16 12 O -0.58 -27.44 16.54 -4.05 -0.07 -27.50 16 13 N -0.57 -20.26 2.36 -835.03 -1.97 -22.24 16 14 C 0.13 3.92 5.70 84.23 0.48 4.40 16 15 C -0.16 -5.42 5.64 29.06 0.16 -5.25 16 16 C 0.16 6.03 5.63 87.23 0.49 6.52 16 17 N -0.60 -28.08 2.54 -697.88 -1.77 -29.85 16 18 C -0.25 -13.37 9.27 84.03 0.78 -12.59 16 19 H 0.04 2.45 7.87 -2.91 -0.02 2.42 16 20 C -0.02 -1.13 4.96 84.86 0.42 -0.71 16 21 N -0.92 -50.80 10.91 21.65 0.24 -50.57 16 22 Si 0.93 45.19 29.58 68.60 2.03 47.22 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 26 C 0.17 7.34 5.17 86.58 0.45 7.79 16 27 C 0.08 2.76 3.80 87.57 0.33 3.09 16 28 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.17 5.14 -2.39 -0.01 1.15 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 33 H 0.11 2.47 8.05 -2.39 -0.02 2.45 16 34 H 0.07 2.41 7.12 -2.39 -0.02 2.39 16 35 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.02 1.05 7.91 -2.39 -0.02 1.03 16 37 H 0.04 1.50 8.02 -2.39 -0.02 1.48 16 38 H 0.06 1.99 7.59 -2.39 -0.02 1.97 16 39 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 40 H 0.05 2.67 4.86 -2.39 -0.01 2.66 16 41 H 0.02 1.10 7.99 -2.39 -0.02 1.08 16 42 H 0.07 2.25 4.89 -2.39 -0.01 2.24 16 43 H 0.10 2.61 7.73 -2.39 -0.02 2.59 16 Total: -1.00 -72.26 352.51 5.82 -66.44 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.06 Total: 6.57 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: 5.69 Total: 28.25 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -3.51 Total: -102.65 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.95 Total: -38.44 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 1.50 Total: -7.38 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -72.26 5.82 -66.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981737590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.421 kcal (2) G-P(sol) polarization free energy of solvation -72.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds