Wall clock time and date at job start Sat Apr 11 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35709 * 117.00106 * 2 1 4 4 C 1.38940 * 119.86291 * 179.97438 * 3 2 1 5 5 C 1.37962 * 120.13198 * 180.02562 * 4 3 2 6 6 F 1.35101 * 120.06986 * 180.02562 * 5 4 3 7 7 C 1.40060 * 119.86399 * 359.97438 * 5 4 3 8 8 C 1.47311 * 120.13219 * 179.97438 * 7 5 4 9 9 O 1.21622 * 119.99491 * 90.00200 * 8 7 5 10 10 N 1.34774 * 120.00453 * 269.99666 * 8 7 5 11 11 C 1.48212 * 119.97126 * 179.97438 * 10 8 7 12 12 C 1.47145 * 110.33769 * 102.47370 * 11 10 8 13 13 C 1.53794 * 111.84049 * 58.29728 * 12 11 10 14 14 N 1.43458 * 107.96008 * 281.66167 * 13 12 11 15 15 C 1.36932 * 118.94108 * 273.60969 * 14 13 12 16 16 H 1.08005 * 120.00115 * 30.53976 * 15 14 13 17 17 C 1.38813 * 120.00073 * 210.53076 * 15 14 13 18 18 N 1.31621 * 120.00116 * 203.92882 * 17 15 14 19 19 Si 1.86794 * 119.99885 * 23.93653 * 17 15 14 20 20 H 1.48506 * 109.47165 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47527 * 59.99700 * 19 17 15 22 22 H 1.48499 * 109.47213 * 299.99421 * 19 17 15 23 23 C 1.48859 * 122.11899 * 93.89223 * 14 13 12 24 24 C 1.43627 * 119.96525 * 359.97438 * 10 8 7 25 25 C 1.40056 * 119.73759 * 0.25016 * 7 5 4 26 26 F 1.35099 * 120.07396 * 179.72684 * 25 7 5 27 27 C 1.37972 * 119.86036 * 359.51344 * 25 7 5 28 28 H 1.08994 * 109.47275 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46946 * 300.00072 * 1 2 3 30 30 H 1.09007 * 109.46672 * 59.99775 * 1 2 3 31 31 H 1.07994 * 119.93371 * 0.02671 * 4 3 2 32 32 H 1.08996 * 109.32794 * 342.20578 * 11 10 8 33 33 H 1.09005 * 109.32495 * 222.73805 * 11 10 8 34 34 H 1.08995 * 109.00961 * 297.69042 * 12 11 10 35 35 H 1.08998 * 108.94121 * 178.85932 * 12 11 10 36 36 H 1.08998 * 109.76243 * 162.04479 * 13 12 11 37 37 H 1.09003 * 109.80969 * 41.30612 * 13 12 11 38 38 H 0.97003 * 120.00098 * 5.53977 * 18 17 15 39 39 H 1.09007 * 109.48085 * 80.34906 * 23 14 13 40 40 H 1.08997 * 109.48333 * 200.38374 * 23 14 13 41 41 H 1.09005 * 108.87296 * 31.46647 * 24 10 8 42 42 H 1.09000 * 108.86867 * 149.90214 * 24 10 8 43 43 H 1.07997 * 119.92980 * 180.23519 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4328 1.2785 0.0005 5 6 4.0649 2.5048 0.0011 6 9 5.4143 2.5708 0.0011 7 6 3.3049 3.6812 0.0005 8 6 3.9737 4.9938 0.0017 9 8 4.2509 5.5358 -1.0512 10 7 4.2783 5.5940 1.1693 11 6 4.9517 6.9143 1.1696 12 6 3.9837 7.9820 1.4661 13 6 3.2931 7.7675 2.8235 14 7 2.2777 6.7690 2.6503 15 6 1.0336 7.1553 2.2286 16 1 0.9246 8.0152 1.5843 17 6 -0.0877 6.4416 2.6291 18 7 -1.1854 6.4792 1.9038 19 14 -0.0386 5.4280 4.1973 20 1 -1.3529 4.7673 4.4010 21 1 0.2528 6.3156 5.3516 22 1 1.0230 4.3956 4.0865 23 6 2.5313 5.3272 2.9203 24 6 3.9499 4.9535 2.4122 25 6 1.9064 3.6048 0.0048 26 9 1.1666 4.7352 0.0098 27 6 1.2857 2.3726 -0.0007 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0177 0.3707 0.0005 32 1 5.3967 7.0924 0.1907 33 1 5.7366 6.9187 1.9260 34 1 3.2267 8.0027 0.6822 35 1 4.5056 8.9388 1.4807 36 1 2.8394 8.7005 3.1577 37 1 4.0222 7.4281 3.5593 38 1 -1.1869 6.9390 1.0497 39 1 2.4649 5.1409 3.9922 40 1 1.7880 4.7236 2.3995 41 1 4.0035 3.8731 2.2771 42 1 4.6805 5.2494 3.1651 43 1 0.2074 2.3124 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982008054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:49 Heat of formation + Delta-G solvation = -84.204245 kcal Electronic energy + Delta-G solvation = -32307.879603 eV Core-core repulsion = 27798.512270 eV Total energy + Delta-G solvation = -4509.367333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.14655 -48.61433 -40.38983 -39.72529 -37.38789 -36.76890 -34.36515 -32.91784 -31.41026 -30.78605 -30.36472 -27.86665 -27.47816 -25.89031 -23.84115 -23.15831 -22.85736 -21.97865 -19.89280 -19.28371 -18.77509 -17.74520 -17.61844 -16.83346 -16.52431 -16.36099 -16.05703 -15.83727 -15.53663 -15.25603 -15.10282 -15.02415 -14.67921 -14.40894 -14.10883 -13.76745 -13.36459 -13.22878 -12.86887 -12.81502 -12.63725 -12.36373 -12.35640 -12.11878 -11.89860 -11.65048 -11.54841 -11.41480 -10.94692 -10.70438 -10.43521 -10.29189 -10.16477 -9.67954 -9.65181 -9.09658 -8.90383 -8.49698 -8.42189 -8.14382 -6.91664 -6.26039 -3.28928 0.79101 0.92038 2.75118 2.79213 3.12355 3.35113 3.38491 3.51427 3.66225 3.87964 4.29696 4.55209 4.63264 4.71033 4.78137 4.90340 4.94258 4.99224 5.00635 5.25933 5.32884 5.41518 5.46295 5.55963 5.63233 5.77600 5.80139 5.82945 5.85492 5.87289 5.94156 6.06347 6.28833 6.33827 6.42139 6.47741 6.59845 6.72017 6.84432 6.98722 7.09135 7.69928 8.15827 8.40089 8.52593 9.08117 9.69702 10.19609 11.15727 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010334 B = 0.006737 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.902043 B = 4154.988494 C = 5855.089093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.305 6.305 3 C 0.200 3.800 4 C -0.209 4.209 5 C 0.196 3.804 6 F -0.120 7.120 7 C -0.234 4.234 8 C 0.578 3.422 9 O -0.535 6.535 10 N -0.573 5.573 11 C 0.130 3.870 12 C -0.169 4.169 13 C 0.160 3.840 14 N -0.595 5.595 15 C -0.342 4.342 16 H 0.061 0.939 17 C 0.001 3.999 18 N -0.913 5.913 19 Si 1.022 2.978 20 H -0.298 1.298 21 H -0.293 1.293 22 H -0.273 1.273 23 C 0.115 3.885 24 C 0.088 3.912 25 C 0.220 3.780 26 F -0.085 7.085 27 C -0.261 4.261 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.154 0.846 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.634 -11.915 -0.659 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.217 6.217 3 C 0.153 3.847 4 C -0.228 4.228 5 C 0.175 3.825 6 F -0.098 7.098 7 C -0.239 4.239 8 C 0.365 3.635 9 O -0.413 6.413 10 N -0.303 5.303 11 C 0.009 3.991 12 C -0.210 4.210 13 C 0.033 3.967 14 N -0.318 5.318 15 C -0.470 4.470 16 H 0.079 0.921 17 C -0.201 4.201 18 N -0.551 5.551 19 Si 0.853 3.147 20 H -0.225 1.225 21 H -0.220 1.220 22 H -0.200 1.200 23 C -0.012 4.012 24 C -0.038 4.038 25 C 0.199 3.801 26 F -0.062 7.062 27 C -0.281 4.281 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.171 0.829 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.965 -12.672 -0.191 14.969 hybrid contribution 0.613 1.329 -0.897 1.716 sum 8.578 -11.344 -1.088 14.263 Atomic orbital electron populations 1.23256 0.77123 1.04534 1.02559 1.86035 1.22415 1.25735 1.87523 1.18315 0.90968 0.84036 0.91411 1.20018 0.92288 0.97322 1.13206 1.16690 0.76828 0.91616 0.97351 1.91555 1.27996 1.97069 1.93150 1.19784 0.93213 0.94571 1.16310 1.17547 0.78027 0.83913 0.84061 1.90760 1.53747 1.65632 1.31132 1.47292 1.57633 1.20131 1.05230 1.20636 0.94409 0.81774 1.02294 1.21819 0.99462 0.96725 1.02954 1.20370 0.90781 0.93063 0.92531 1.43922 1.09945 0.99555 1.78414 1.20091 0.82985 1.16144 1.27817 0.92101 1.26060 0.91767 0.99268 1.03043 1.70836 1.29907 1.41503 1.12897 0.84755 0.74893 0.77060 0.78003 1.22542 1.21991 1.20015 1.23002 0.93662 0.86726 0.97762 1.22004 0.99344 0.96659 0.85808 1.17020 0.86717 0.83225 0.93120 1.91837 1.75284 1.47480 1.91637 1.21234 1.02178 0.90515 1.14166 0.87641 0.91582 0.91875 0.82870 0.90168 0.91632 0.91108 0.92280 0.92899 0.94767 0.92600 0.94100 0.91503 0.91576 0.90968 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.80 101.05 0.99 1.15 16 2 O -0.30 -3.39 10.48 -18.83 -0.20 -3.59 16 3 C 0.20 2.59 6.69 -39.06 -0.26 2.33 16 4 C -0.21 -2.65 9.94 -39.42 -0.39 -3.04 16 5 C 0.20 2.96 6.81 -39.00 -0.27 2.69 16 6 F -0.12 -1.79 16.83 2.25 0.04 -1.75 16 7 C -0.23 -4.22 3.92 -104.84 -0.41 -4.63 16 8 C 0.58 11.77 6.38 -12.57 -0.08 11.69 16 9 O -0.54 -12.39 16.54 5.26 0.09 -12.30 16 10 N -0.57 -10.60 2.46 -177.72 -0.44 -11.03 16 11 C 0.13 2.17 5.70 -5.91 -0.03 2.14 16 12 C -0.17 -3.04 5.64 -29.13 -0.16 -3.21 16 13 C 0.16 3.10 5.63 -5.24 -0.03 3.08 16 14 N -0.60 -13.59 2.23 -171.76 -0.38 -13.97 16 15 C -0.34 -9.26 9.46 -15.06 -0.14 -9.40 16 16 H 0.06 1.84 8.06 -52.48 -0.42 1.41 16 17 C 0.00 0.03 5.08 -17.43 -0.09 -0.06 16 18 N -0.91 -27.36 13.70 55.49 0.76 -26.60 16 19 Si 1.02 24.55 25.96 -169.99 -4.41 20.14 16 20 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.27 -5.79 4.66 56.52 0.26 -5.53 16 23 C 0.11 2.36 4.29 -1.55 -0.01 2.35 16 24 C 0.09 1.50 5.08 -4.37 -0.02 1.48 16 25 C 0.22 4.07 6.35 -39.00 -0.25 3.82 16 26 F -0.08 -1.94 16.20 2.25 0.04 -1.91 16 27 C -0.26 -3.90 8.99 -39.42 -0.35 -4.25 16 28 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.55 7.65 -51.93 -0.40 0.15 16 30 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 31 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.08 1.38 7.12 -51.93 -0.37 1.01 16 33 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 34 H 0.07 1.57 7.91 -51.93 -0.41 1.16 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 1.06 8.02 -51.93 -0.42 0.64 16 37 H 0.03 0.58 7.59 -51.93 -0.39 0.18 16 38 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 39 H 0.04 0.83 5.68 -51.92 -0.29 0.53 16 40 H 0.07 1.51 4.57 -51.93 -0.24 1.27 16 41 H 0.07 1.04 6.47 -51.93 -0.34 0.70 16 42 H 0.07 1.05 7.73 -51.93 -0.40 0.65 16 43 H 0.16 2.07 6.27 -52.49 -0.33 1.74 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -33.14 348.87 -6.14 -39.28 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.38 Total: 0.35 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.51 Total: 6.13 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.06 Total: -51.60 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.11 Total: -15.90 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.07 Total: -3.66 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -4.41 Total: 20.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.14 -6.14 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982008054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.923 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds