Wall clock time and date at job start Sat Apr 11 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35709 * 117.00106 * 2 1 4 4 C 1.38940 * 119.86291 * 179.97438 * 3 2 1 5 5 C 1.37962 * 120.13198 * 180.02562 * 4 3 2 6 6 F 1.35101 * 120.06986 * 180.02562 * 5 4 3 7 7 C 1.40060 * 119.86399 * 359.97438 * 5 4 3 8 8 C 1.47311 * 120.13219 * 179.97438 * 7 5 4 9 9 O 1.21622 * 119.99491 * 90.00200 * 8 7 5 10 10 N 1.34774 * 120.00453 * 269.99666 * 8 7 5 11 11 C 1.48212 * 119.97126 * 179.97438 * 10 8 7 12 12 C 1.47145 * 110.33769 * 102.47370 * 11 10 8 13 13 C 1.53794 * 111.84049 * 58.29728 * 12 11 10 14 14 N 1.43458 * 107.96008 * 281.66167 * 13 12 11 15 15 C 1.36932 * 118.94108 * 273.60969 * 14 13 12 16 16 H 1.08005 * 120.00115 * 30.53976 * 15 14 13 17 17 C 1.38813 * 120.00073 * 210.53076 * 15 14 13 18 18 N 1.31621 * 120.00116 * 203.92882 * 17 15 14 19 19 Si 1.86794 * 119.99885 * 23.93653 * 17 15 14 20 20 H 1.48506 * 109.47165 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47527 * 59.99700 * 19 17 15 22 22 H 1.48499 * 109.47213 * 299.99421 * 19 17 15 23 23 C 1.48859 * 122.11899 * 93.89223 * 14 13 12 24 24 C 1.43627 * 119.96525 * 359.97438 * 10 8 7 25 25 C 1.40056 * 119.73759 * 0.25016 * 7 5 4 26 26 F 1.35099 * 120.07396 * 179.72684 * 25 7 5 27 27 C 1.37972 * 119.86036 * 359.51344 * 25 7 5 28 28 H 1.08994 * 109.47275 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46946 * 300.00072 * 1 2 3 30 30 H 1.09007 * 109.46672 * 59.99775 * 1 2 3 31 31 H 1.07994 * 119.93371 * 0.02671 * 4 3 2 32 32 H 1.08996 * 109.32794 * 342.20578 * 11 10 8 33 33 H 1.09005 * 109.32495 * 222.73805 * 11 10 8 34 34 H 1.08995 * 109.00961 * 297.69042 * 12 11 10 35 35 H 1.08998 * 108.94121 * 178.85932 * 12 11 10 36 36 H 1.08998 * 109.76243 * 162.04479 * 13 12 11 37 37 H 1.09003 * 109.80969 * 41.30612 * 13 12 11 38 38 H 0.97003 * 120.00098 * 5.53977 * 18 17 15 39 39 H 1.09007 * 109.48085 * 80.34906 * 23 14 13 40 40 H 1.08997 * 109.48333 * 200.38374 * 23 14 13 41 41 H 1.09005 * 108.87296 * 31.46647 * 24 10 8 42 42 H 1.09000 * 108.86867 * 149.90214 * 24 10 8 43 43 H 1.07997 * 119.92980 * 180.23519 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4328 1.2785 0.0005 5 6 4.0649 2.5048 0.0011 6 9 5.4143 2.5708 0.0011 7 6 3.3049 3.6812 0.0005 8 6 3.9737 4.9938 0.0017 9 8 4.2509 5.5358 -1.0512 10 7 4.2783 5.5940 1.1693 11 6 4.9517 6.9143 1.1696 12 6 3.9837 7.9820 1.4661 13 6 3.2931 7.7675 2.8235 14 7 2.2777 6.7690 2.6503 15 6 1.0336 7.1553 2.2286 16 1 0.9246 8.0152 1.5843 17 6 -0.0877 6.4416 2.6291 18 7 -1.1854 6.4792 1.9038 19 14 -0.0386 5.4280 4.1973 20 1 -1.3529 4.7673 4.4010 21 1 0.2528 6.3156 5.3516 22 1 1.0230 4.3956 4.0865 23 6 2.5313 5.3272 2.9203 24 6 3.9499 4.9535 2.4122 25 6 1.9064 3.6048 0.0048 26 9 1.1666 4.7352 0.0098 27 6 1.2857 2.3726 -0.0007 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0177 0.3707 0.0005 32 1 5.3967 7.0924 0.1907 33 1 5.7366 6.9187 1.9260 34 1 3.2267 8.0027 0.6822 35 1 4.5056 8.9388 1.4807 36 1 2.8394 8.7005 3.1577 37 1 4.0222 7.4281 3.5593 38 1 -1.1869 6.9390 1.0497 39 1 2.4649 5.1409 3.9922 40 1 1.7880 4.7236 2.3995 41 1 4.0035 3.8731 2.2771 42 1 4.6805 5.2494 3.1651 43 1 0.2074 2.3124 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982008054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:48 Heat of formation + Delta-G solvation = -106.524442 kcal Electronic energy + Delta-G solvation = -32308.847479 eV Core-core repulsion = 27798.512270 eV Total energy + Delta-G solvation = -4510.335210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.30192 -50.14637 -41.63973 -40.96188 -38.89666 -38.01497 -36.09155 -34.45962 -33.36923 -31.93769 -31.58389 -29.35147 -28.44322 -27.46344 -25.17820 -24.93378 -24.06928 -23.33155 -21.63541 -20.66802 -19.90518 -19.45427 -18.90432 -18.43430 -17.92439 -17.47619 -17.21651 -17.09059 -16.76679 -16.70645 -16.55969 -16.47471 -15.99106 -15.68346 -15.57708 -15.46762 -15.03757 -14.76688 -14.45124 -14.19675 -13.82542 -13.69893 -13.67162 -13.41095 -13.30365 -13.21852 -12.93422 -12.44957 -12.41921 -12.05819 -12.03090 -11.87563 -11.82271 -11.46290 -11.19400 -11.12763 -10.42283 -10.09479 -9.71857 -9.61456 -8.87478 -8.45103 -5.43939 -0.38684 -0.27556 1.23555 1.44849 1.57731 1.75199 1.83459 1.90154 2.10711 2.64388 2.68408 3.08202 3.12801 3.26029 3.49977 3.61534 3.61746 3.89704 3.93953 4.04678 4.10250 4.30476 4.31655 4.37027 4.41618 4.50809 4.52685 4.57667 4.63403 4.69472 4.78541 4.79445 4.83499 4.87727 4.92860 4.98147 5.17226 5.26345 5.36711 5.59411 5.90855 6.02522 6.23529 6.37667 6.90914 7.01009 7.75602 8.12195 8.92273 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010334 B = 0.006737 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.902043 B = 4154.988494 C = 5855.089093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.298 6.298 3 C 0.215 3.785 4 C -0.184 4.184 5 C 0.197 3.803 6 F -0.118 7.118 7 C -0.253 4.253 8 C 0.568 3.432 9 O -0.580 6.580 10 N -0.573 5.573 11 C 0.126 3.874 12 C -0.155 4.155 13 C 0.156 3.844 14 N -0.606 5.606 15 C -0.324 4.324 16 H 0.007 0.993 17 C -0.050 4.050 18 N -0.947 5.947 19 Si 1.064 2.936 20 H -0.312 1.312 21 H -0.284 1.284 22 H -0.223 1.223 23 C 0.107 3.893 24 C 0.090 3.910 25 C 0.186 3.814 26 F -0.126 7.126 27 C -0.257 4.257 28 H 0.138 0.862 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.190 0.810 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.011 0.989 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.241 0.759 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.282 -15.324 1.743 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.210 6.210 3 C 0.167 3.833 4 C -0.203 4.203 5 C 0.177 3.823 6 F -0.096 7.096 7 C -0.258 4.258 8 C 0.356 3.644 9 O -0.461 6.461 10 N -0.302 5.302 11 C 0.005 3.995 12 C -0.196 4.196 13 C 0.029 3.971 14 N -0.330 5.330 15 C -0.453 4.453 16 H 0.025 0.975 17 C -0.245 4.245 18 N -0.589 5.589 19 Si 0.889 3.111 20 H -0.240 1.240 21 H -0.211 1.211 22 H -0.148 1.148 23 C -0.018 4.018 24 C -0.035 4.035 25 C 0.165 3.835 26 F -0.104 7.104 27 C -0.276 4.276 28 H 0.156 0.844 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.208 0.792 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.030 0.970 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.132 0.868 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.669 -16.088 2.237 19.434 hybrid contribution -0.218 2.376 -1.743 2.955 sum 10.451 -13.712 0.494 17.248 Atomic orbital electron populations 1.23592 0.75392 1.06774 1.02762 1.86072 1.24070 1.24175 1.86694 1.18329 0.91142 0.84012 0.89829 1.20329 0.92269 0.97492 1.10238 1.16682 0.76763 0.91367 0.97484 1.91561 1.27784 1.97066 1.93152 1.19704 0.93120 0.94529 1.18472 1.18060 0.77518 0.84807 0.84033 1.90716 1.55700 1.67016 1.32703 1.47500 1.56852 1.20501 1.05361 1.20807 0.94752 0.80516 1.03387 1.21665 0.98414 0.99234 1.00289 1.20545 0.90724 0.91903 0.93903 1.43972 1.08976 1.01540 1.78508 1.19759 0.85589 1.14204 1.25790 0.97535 1.27256 0.91230 1.00765 1.05288 1.70970 1.31487 1.43680 1.12732 0.84257 0.75775 0.77147 0.73896 1.24000 1.21095 1.14773 1.23096 0.95596 0.84627 0.98514 1.22066 0.97782 0.97833 0.85812 1.17356 0.86986 0.83115 0.96018 1.91735 1.76282 1.49809 1.92573 1.21337 1.02870 0.89950 1.13458 0.84443 0.91632 0.91494 0.79248 0.91225 0.86758 0.96971 0.89234 0.94282 0.90356 0.94991 0.92127 0.93937 0.89706 0.86847 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.80 113.37 1.11 1.22 16 2 O -0.30 -5.50 10.48 -90.30 -0.95 -6.44 16 3 C 0.22 4.93 6.69 22.60 0.15 5.09 16 4 C -0.18 -3.98 9.94 22.37 0.22 -3.76 16 5 C 0.20 5.51 6.81 22.65 0.15 5.67 16 6 F -0.12 -3.21 16.83 44.97 0.76 -2.45 16 7 C -0.25 -9.08 3.92 -20.01 -0.08 -9.16 16 8 C 0.57 23.40 6.38 86.63 0.55 23.95 16 9 O -0.58 -28.06 16.54 -4.10 -0.07 -28.13 16 10 N -0.57 -20.42 2.46 -834.43 -2.05 -22.47 16 11 C 0.13 3.98 5.70 84.23 0.48 4.46 16 12 C -0.16 -5.56 5.64 29.04 0.16 -5.40 16 13 C 0.16 5.81 5.63 87.21 0.49 6.30 16 14 N -0.61 -27.51 2.23 -697.33 -1.55 -29.06 16 15 C -0.32 -18.41 9.46 84.03 0.79 -17.61 16 16 H 0.01 0.45 8.06 -2.91 -0.02 0.42 16 17 C -0.05 -2.88 5.08 84.86 0.43 -2.45 16 18 N -0.95 -60.18 13.70 21.65 0.30 -59.88 16 19 Si 1.06 49.29 25.96 68.60 1.78 51.07 16 20 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.22 -8.54 4.66 99.48 0.46 -8.08 16 23 C 0.11 4.15 4.29 86.69 0.37 4.52 16 24 C 0.09 2.75 5.08 87.68 0.45 3.20 16 25 C 0.19 7.02 6.35 22.65 0.14 7.17 16 26 F -0.13 -6.19 16.20 44.97 0.73 -5.46 16 27 C -0.26 -7.45 8.99 22.37 0.20 -7.25 16 28 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.92 7.65 -2.39 -0.02 0.90 16 30 H 0.07 0.87 7.65 -2.38 -0.02 0.85 16 31 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.07 2.38 7.12 -2.39 -0.02 2.36 16 33 H 0.11 2.56 8.06 -2.38 -0.02 2.54 16 34 H 0.01 0.55 7.91 -2.39 -0.02 0.53 16 35 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.04 1.55 8.02 -2.39 -0.02 1.53 16 37 H 0.08 2.28 7.59 -2.39 -0.02 2.26 16 38 H 0.24 15.99 8.73 -92.71 -0.81 15.18 16 39 H 0.06 2.15 5.68 -2.38 -0.01 2.13 16 40 H 0.04 1.87 4.57 -2.39 -0.01 1.86 16 41 H 0.08 2.32 6.47 -2.38 -0.02 2.31 16 42 H 0.11 2.59 7.73 -2.39 -0.02 2.57 16 43 H 0.16 4.31 6.27 -2.91 -0.02 4.29 16 Total: -1.00 -80.71 348.87 5.36 -75.35 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.78 Total: 11.53 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 5.64 Total: 15.94 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -3.31 Total: -111.41 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.01 Total: -34.57 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 1.49 Total: -7.91 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 1.78 Total: 51.07 kcal Total: -80.71 5.36 -75.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982008054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.175 kcal (2) G-P(sol) polarization free energy of solvation -80.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds