Wall clock time and date at job start Sat Apr 11 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35709 * 116.99943 * 2 1 4 4 C 1.38828 * 120.14583 * 270.20540 * 3 2 1 5 5 F 1.35101 * 119.93521 * 359.97438 * 4 3 2 6 6 C 1.38265 * 120.11506 * 180.28085 * 4 3 2 7 7 C 1.38444 * 120.41500 * 359.76040 * 6 4 3 8 8 C 1.38092 * 120.28411 * 0.02562 * 7 6 4 9 9 F 1.35104 * 120.05951 * 179.97438 * 8 7 6 10 10 C 1.39993 * 119.87967 * 359.97438 * 8 7 6 11 11 C 1.47393 * 120.19973 * 180.02562 * 10 8 7 12 12 O 1.21604 * 120.00767 * 89.99571 * 11 10 8 13 13 N 1.34780 * 119.99241 * 269.99087 * 11 10 8 14 14 C 1.46493 * 120.00687 * 0.02562 * 13 11 10 15 15 C 1.46508 * 119.99455 * 179.97438 * 13 11 10 16 16 C 1.53782 * 113.61383 * 63.35067 * 15 13 11 17 17 C 1.53780 * 87.08111 * 89.11141 * 16 15 13 18 18 N 1.46501 * 113.61500 * 270.79614 * 17 16 15 19 19 C 1.36929 * 120.00145 * 202.22484 * 18 17 16 20 20 H 1.08003 * 120.00219 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00320 * 180.02562 * 19 18 17 22 22 N 1.31616 * 119.99756 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47292 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47049 * 120.00319 * 23 21 19 26 26 H 1.48501 * 109.47581 * 240.00149 * 23 21 19 27 27 C 1.53781 * 87.17366 * 25.39312 * 17 16 15 28 28 H 1.09004 * 109.47706 * 300.00732 * 1 2 3 29 29 H 1.09007 * 109.46957 * 60.00607 * 1 2 3 30 30 H 1.09002 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.79283 * 179.73968 * 6 4 3 32 32 H 1.07995 * 119.85717 * 179.97438 * 7 6 4 33 33 H 1.09008 * 109.46811 * 268.64486 * 14 13 11 34 34 H 1.09005 * 109.47308 * 28.63397 * 14 13 11 35 35 H 1.08994 * 109.47836 * 148.64463 * 14 13 11 36 36 H 1.08996 * 112.90923 * 292.09031 * 15 13 11 37 37 H 1.09007 * 113.61237 * 334.56043 * 16 15 13 38 38 H 1.09002 * 113.61469 * 203.66426 * 16 15 13 39 39 H 1.09003 * 113.61022 * 139.98469 * 17 16 15 40 40 H 0.96999 * 119.99951 * 22.22992 * 18 17 16 41 41 H 0.97003 * 119.99905 * 179.97438 * 22 21 19 42 42 H 1.08997 * 113.61726 * 89.15502 * 27 17 16 43 43 H 1.09002 * 113.60725 * 220.06182 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 2.3577 1.8323 -1.2005 5 9 2.0485 1.2336 -2.3715 6 6 2.9906 3.0616 -1.1998 7 6 3.3132 3.6832 -0.0055 8 6 3.0060 3.0805 1.1984 9 9 3.3233 3.6909 2.3612 10 6 2.3652 1.8359 1.2118 11 6 2.0336 1.1866 2.4927 12 8 0.9605 1.4007 3.0233 13 7 2.9197 0.3552 3.0760 14 6 4.2126 0.0975 2.4372 15 6 2.5903 -0.2898 4.3495 16 6 1.3875 -1.2441 4.2637 17 6 2.3916 -2.3511 3.9015 18 7 2.6464 -2.4647 2.4633 19 6 3.1273 -3.6367 1.9437 20 1 3.3184 -4.4776 2.5940 21 6 3.3692 -3.7443 0.5810 22 7 3.1368 -2.7194 -0.2115 23 14 4.0259 -5.3429 -0.1278 24 1 4.2019 -6.3334 0.9646 25 1 3.0637 -5.8738 -1.1265 26 1 5.3338 -5.0927 -0.7850 27 6 3.4525 -1.5289 4.6521 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.2353 3.5398 -2.1368 32 1 3.8079 4.6431 -0.0155 33 1 4.1299 -0.7746 1.7884 34 1 4.5045 0.9646 1.8447 35 1 4.9654 -0.0895 3.2029 36 1 2.5306 0.4147 5.1790 37 1 0.6947 -1.0021 3.4576 38 1 0.8875 -1.4035 5.2191 39 1 2.1712 -3.3106 4.3694 40 1 2.4744 -1.7096 1.8792 41 1 3.3062 -2.7944 -1.1637 42 1 3.5182 -1.7664 5.7139 43 1 4.4246 -1.5166 4.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999218133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:07 Heat of formation + Delta-G solvation = -70.376198 kcal Electronic energy + Delta-G solvation = -32200.219135 eV Core-core repulsion = 27691.451430 eV Total energy + Delta-G solvation = -4508.767704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.03875 -48.77945 -40.50086 -39.18680 -37.47097 -37.01164 -34.15941 -33.11347 -30.99993 -29.85253 -29.75565 -26.82669 -26.69134 -25.12921 -24.61331 -23.71784 -22.54501 -22.40504 -20.07588 -18.34574 -18.01452 -17.72756 -17.39296 -17.16396 -16.48903 -16.10420 -15.80697 -15.73277 -15.37654 -15.16420 -14.70799 -14.57457 -14.49622 -14.31081 -13.86880 -13.74256 -13.16975 -13.12033 -12.90442 -12.59464 -12.39459 -12.14342 -12.05156 -11.82136 -11.70651 -11.34866 -11.21831 -11.17319 -10.85451 -10.72192 -10.21557 -10.09314 -9.85884 -9.77755 -9.57986 -9.38436 -9.02143 -8.82447 -8.53882 -8.11367 -6.90274 -5.67430 -2.99364 0.69061 0.82421 2.74184 3.00329 3.30976 3.44073 3.51289 3.52461 3.69239 4.10545 4.23725 4.47963 4.61429 4.65734 4.87157 5.05141 5.23676 5.28859 5.48667 5.52539 5.52668 5.58204 5.63848 5.65673 5.75527 5.85550 5.87668 5.90570 5.93806 6.02529 6.06279 6.19296 6.35591 6.47464 6.48620 6.67568 6.75373 6.76990 6.91724 7.12580 7.64531 7.69779 7.77675 8.40155 8.47246 9.59213 10.16720 10.54759 11.50031 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.005996 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.413612 B = 4668.346345 C = 6245.847099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.278 6.278 3 C 0.146 3.854 4 C 0.072 3.928 5 F -0.121 7.121 6 C -0.104 4.104 7 C -0.140 4.140 8 C 0.128 3.872 9 F -0.127 7.127 10 C -0.152 4.152 11 C 0.575 3.425 12 O -0.535 6.535 13 N -0.568 5.568 14 C 0.068 3.932 15 C 0.127 3.873 16 C -0.161 4.161 17 C 0.166 3.834 18 N -0.704 5.704 19 C -0.250 4.250 20 H 0.068 0.932 21 C -0.006 4.006 22 N -0.906 5.906 23 Si 0.899 3.101 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.294 1.294 27 C -0.183 4.183 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.103 0.897 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.394 0.606 41 H 0.253 0.747 42 H 0.080 0.920 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 12.854 1.335 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.193 6.193 3 C 0.099 3.901 4 C 0.052 3.948 5 F -0.100 7.100 6 C -0.123 4.123 7 C -0.159 4.159 8 C 0.108 3.892 9 F -0.105 7.105 10 C -0.157 4.157 11 C 0.361 3.639 12 O -0.412 6.412 13 N -0.299 5.299 14 C -0.074 4.074 15 C 0.024 3.976 16 C -0.201 4.201 17 C 0.053 3.947 18 N -0.345 5.345 19 C -0.381 4.381 20 H 0.086 0.914 21 C -0.203 4.203 22 N -0.553 5.553 23 Si 0.730 3.270 24 H -0.208 1.208 25 H -0.221 1.221 26 H -0.221 1.221 27 C -0.224 4.224 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.123 0.877 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.231 0.769 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.386 12.562 1.544 12.663 hybrid contribution 0.383 -0.457 -0.705 0.924 sum -0.004 12.105 0.839 12.134 Atomic orbital electron populations 1.23098 0.78128 1.04260 1.00114 1.86435 1.19604 1.19820 1.93447 1.18488 0.96251 0.86465 0.88908 1.17943 1.02805 0.92668 0.81364 1.91545 1.90897 1.83116 1.44423 1.20964 0.98307 0.93538 0.99495 1.20815 1.03524 1.01905 0.89677 1.17384 0.98819 0.90883 0.82124 1.91541 1.90434 1.82047 1.46469 1.20228 1.04951 0.95279 0.95203 1.17508 0.84140 0.79062 0.83184 1.90770 1.22973 1.63223 1.64282 1.47346 1.17071 1.43345 1.22125 1.22131 0.83480 1.03236 0.98595 1.21864 0.98457 0.93047 0.84237 1.23730 0.97143 0.97345 1.01893 1.21134 0.91754 0.94799 0.87006 1.42393 1.76604 1.14936 1.00554 1.19233 1.36276 0.91346 0.91272 0.91379 1.24741 1.02148 0.97207 0.96223 1.69721 1.53222 1.28705 1.03627 0.86262 0.78152 0.83629 0.78913 1.20828 1.22098 1.22086 1.24273 1.00927 0.96405 1.00831 0.93080 0.93974 0.87899 0.83091 0.83143 0.87746 0.92753 0.91222 0.91004 0.90858 0.89855 0.92111 0.76903 0.93674 0.90114 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 11.13 101.05 1.12 1.78 16 2 O -0.28 -5.67 9.73 -18.83 -0.18 -5.86 16 3 C 0.15 2.61 5.74 -38.65 -0.22 2.38 16 4 C 0.07 1.11 7.30 -39.35 -0.29 0.82 16 5 F -0.12 -2.00 17.11 2.25 0.04 -1.96 16 6 C -0.10 -1.19 10.00 -39.50 -0.40 -1.58 16 7 C -0.14 -1.56 10.00 -39.56 -0.40 -1.96 16 8 C 0.13 1.86 6.85 -38.98 -0.27 1.60 16 9 F -0.13 -1.89 16.83 2.25 0.04 -1.85 16 10 C -0.15 -2.64 3.91 -104.80 -0.41 -3.05 16 11 C 0.58 11.17 5.98 -12.53 -0.07 11.09 16 12 O -0.53 -11.42 15.83 5.27 0.08 -11.33 16 13 N -0.57 -10.57 2.08 -174.17 -0.36 -10.94 16 14 C 0.07 1.23 8.67 59.84 0.52 1.74 16 15 C 0.13 2.23 4.13 -67.02 -0.28 1.95 16 16 C -0.16 -2.97 7.13 -25.92 -0.18 -3.15 16 17 C 0.17 3.32 4.55 -67.12 -0.31 3.02 16 18 N -0.70 -16.99 4.06 -52.64 -0.21 -17.20 16 19 C -0.25 -6.65 9.97 -15.06 -0.15 -6.80 16 20 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 21 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 22 N -0.91 -25.37 13.06 55.49 0.72 -24.65 16 23 Si 0.90 21.78 29.55 -169.99 -5.02 16.76 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C -0.18 -3.10 7.17 -25.83 -0.19 -3.28 16 28 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 31 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.10 2.31 6.14 -51.92 -0.32 1.99 16 34 H 0.05 0.89 6.50 -51.93 -0.34 0.56 16 35 H 0.07 1.12 6.56 -51.93 -0.34 0.78 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.55 7.19 -51.93 -0.37 1.18 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.21 8.12 -51.93 -0.42 0.78 16 40 H 0.39 9.90 5.52 -40.82 -0.23 9.68 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.40 5.90 -51.93 -0.31 1.10 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -30.88 364.38 -6.25 -37.13 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.24 Total: 10.08 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.61 Total: 4.32 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.15 Total: -52.78 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.10 Total: -17.19 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.08 Total: -3.81 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.88 -6.25 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999218133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.247 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds