Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35709 * 116.99943 * 2 1 4 4 C 1.38828 * 120.14583 * 270.20540 * 3 2 1 5 5 F 1.35101 * 119.93521 * 359.97438 * 4 3 2 6 6 C 1.38265 * 120.11506 * 180.28085 * 4 3 2 7 7 C 1.38444 * 120.41500 * 359.76040 * 6 4 3 8 8 C 1.38092 * 120.28411 * 0.02562 * 7 6 4 9 9 F 1.35104 * 120.05951 * 179.97438 * 8 7 6 10 10 C 1.39993 * 119.87967 * 359.97438 * 8 7 6 11 11 C 1.47393 * 120.19973 * 180.02562 * 10 8 7 12 12 O 1.21604 * 120.00767 * 89.99571 * 11 10 8 13 13 N 1.34780 * 119.99241 * 269.99087 * 11 10 8 14 14 C 1.46493 * 120.00687 * 0.02562 * 13 11 10 15 15 C 1.46508 * 119.99455 * 179.97438 * 13 11 10 16 16 C 1.53782 * 113.61383 * 63.35067 * 15 13 11 17 17 C 1.53780 * 87.08111 * 89.11141 * 16 15 13 18 18 N 1.46501 * 113.61500 * 270.79614 * 17 16 15 19 19 C 1.36929 * 120.00145 * 202.22484 * 18 17 16 20 20 H 1.08003 * 120.00219 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00320 * 180.02562 * 19 18 17 22 22 N 1.31616 * 119.99756 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47292 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47049 * 120.00319 * 23 21 19 26 26 H 1.48501 * 109.47581 * 240.00149 * 23 21 19 27 27 C 1.53781 * 87.17366 * 25.39312 * 17 16 15 28 28 H 1.09004 * 109.47706 * 300.00732 * 1 2 3 29 29 H 1.09007 * 109.46957 * 60.00607 * 1 2 3 30 30 H 1.09002 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.79283 * 179.73968 * 6 4 3 32 32 H 1.07995 * 119.85717 * 179.97438 * 7 6 4 33 33 H 1.09008 * 109.46811 * 268.64486 * 14 13 11 34 34 H 1.09005 * 109.47308 * 28.63397 * 14 13 11 35 35 H 1.08994 * 109.47836 * 148.64463 * 14 13 11 36 36 H 1.08996 * 112.90923 * 292.09031 * 15 13 11 37 37 H 1.09007 * 113.61237 * 334.56043 * 16 15 13 38 38 H 1.09002 * 113.61469 * 203.66426 * 16 15 13 39 39 H 1.09003 * 113.61022 * 139.98469 * 17 16 15 40 40 H 0.96999 * 119.99951 * 22.22992 * 18 17 16 41 41 H 0.97003 * 119.99905 * 179.97438 * 22 21 19 42 42 H 1.08997 * 113.61726 * 89.15502 * 27 17 16 43 43 H 1.09002 * 113.60725 * 220.06182 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 2.3577 1.8323 -1.2005 5 9 2.0485 1.2336 -2.3715 6 6 2.9906 3.0616 -1.1998 7 6 3.3132 3.6832 -0.0055 8 6 3.0060 3.0805 1.1984 9 9 3.3233 3.6909 2.3612 10 6 2.3652 1.8359 1.2118 11 6 2.0336 1.1866 2.4927 12 8 0.9605 1.4007 3.0233 13 7 2.9197 0.3552 3.0760 14 6 4.2126 0.0975 2.4372 15 6 2.5903 -0.2898 4.3495 16 6 1.3875 -1.2441 4.2637 17 6 2.3916 -2.3511 3.9015 18 7 2.6464 -2.4647 2.4633 19 6 3.1273 -3.6367 1.9437 20 1 3.3184 -4.4776 2.5940 21 6 3.3692 -3.7443 0.5810 22 7 3.1368 -2.7194 -0.2115 23 14 4.0259 -5.3429 -0.1278 24 1 4.2019 -6.3334 0.9646 25 1 3.0637 -5.8738 -1.1265 26 1 5.3338 -5.0927 -0.7850 27 6 3.4525 -1.5289 4.6521 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.2353 3.5398 -2.1368 32 1 3.8079 4.6431 -0.0155 33 1 4.1299 -0.7746 1.7884 34 1 4.5045 0.9646 1.8447 35 1 4.9654 -0.0895 3.2029 36 1 2.5306 0.4147 5.1790 37 1 0.6947 -1.0021 3.4576 38 1 0.8875 -1.4035 5.2191 39 1 2.1712 -3.3106 4.3694 40 1 2.4744 -1.7096 1.8792 41 1 3.3062 -2.7944 -1.1637 42 1 3.5182 -1.7664 5.7139 43 1 4.4246 -1.5166 4.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999218133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = -88.654441 kcal Electronic energy + Delta-G solvation = -32201.011739 eV Core-core repulsion = 27691.451430 eV Total energy + Delta-G solvation = -4509.560308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.16702 -49.98227 -41.89479 -40.52604 -38.98013 -38.23151 -35.76225 -34.93024 -32.27191 -31.62664 -30.95354 -28.27138 -28.05378 -26.71015 -25.98764 -25.42329 -23.91758 -23.67536 -21.49874 -19.71248 -19.41402 -19.21226 -18.82107 -18.55179 -17.86911 -17.42274 -17.13700 -16.99288 -16.67333 -16.57405 -16.52311 -15.93450 -15.69350 -15.53113 -15.44534 -15.25877 -14.75536 -14.74142 -14.17893 -13.95103 -13.76663 -13.53277 -13.33863 -13.27869 -13.08121 -12.93765 -12.78253 -12.60555 -12.53017 -12.42507 -12.06323 -11.72985 -11.62720 -11.31710 -11.14340 -10.87614 -10.76584 -10.17018 -9.67857 -9.59575 -8.84103 -7.73513 -5.05058 -0.42236 -0.28862 1.30430 1.49221 1.51620 1.59192 1.82850 2.05597 2.48927 2.62634 2.99808 3.01801 3.27462 3.50155 3.60882 3.70032 3.78936 3.84064 3.97800 4.11413 4.18900 4.21224 4.28698 4.30545 4.37770 4.54433 4.60776 4.63221 4.73097 4.77721 4.84087 4.87009 4.89658 5.01814 5.09307 5.18098 5.28071 5.41853 5.44921 5.58988 5.71333 6.24910 6.34343 6.40929 6.95075 7.49914 8.26427 8.54944 9.42269 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.005996 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.413612 B = 4668.346345 C = 6245.847099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.312 6.312 3 C 0.117 3.883 4 C 0.055 3.945 5 F -0.133 7.133 6 C -0.077 4.077 7 C -0.113 4.113 8 C 0.123 3.877 9 F -0.129 7.129 10 C -0.176 4.176 11 C 0.570 3.430 12 O -0.565 6.565 13 N -0.571 5.571 14 C 0.079 3.921 15 C 0.122 3.878 16 C -0.153 4.153 17 C 0.145 3.855 18 N -0.716 5.716 19 C -0.250 4.250 20 H 0.068 0.932 21 C -0.057 4.057 22 N -0.925 5.925 23 Si 0.956 3.044 24 H -0.274 1.274 25 H -0.302 1.302 26 H -0.296 1.296 27 C -0.159 4.159 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.197 0.803 32 H 0.200 0.800 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.037 0.963 38 H 0.114 0.886 39 H 0.061 0.939 40 H 0.388 0.612 41 H 0.244 0.756 42 H 0.119 0.881 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 14.759 1.791 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.228 6.228 3 C 0.070 3.930 4 C 0.035 3.965 5 F -0.112 7.112 6 C -0.095 4.095 7 C -0.131 4.131 8 C 0.102 3.898 9 F -0.108 7.108 10 C -0.181 4.181 11 C 0.358 3.642 12 O -0.446 6.446 13 N -0.300 5.300 14 C -0.063 4.063 15 C 0.019 3.981 16 C -0.193 4.193 17 C 0.034 3.966 18 N -0.358 5.358 19 C -0.382 4.382 20 H 0.086 0.914 21 C -0.252 4.252 22 N -0.573 5.573 23 Si 0.787 3.213 24 H -0.199 1.199 25 H -0.230 1.230 26 H -0.224 1.224 27 C -0.199 4.199 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.214 0.786 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.132 0.868 39 H 0.079 0.921 40 H 0.223 0.777 41 H 0.053 0.947 42 H 0.137 0.863 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.193 14.459 2.050 14.653 hybrid contribution -0.134 -1.007 -0.795 1.290 sum 1.059 13.453 1.255 13.553 Atomic orbital electron populations 1.23042 0.77802 1.03640 1.00694 1.86372 1.20479 1.22147 1.93796 1.18737 0.97596 0.86447 0.90212 1.18236 1.04020 0.94077 0.80154 1.91511 1.91217 1.83664 1.44769 1.21460 0.95226 0.91303 1.01552 1.21331 1.01230 1.02823 0.87701 1.17633 0.98810 0.90072 0.83257 1.91535 1.90417 1.81840 1.46980 1.20151 1.07199 0.96800 0.93934 1.17911 0.83677 0.78888 0.83758 1.90727 1.24026 1.64427 1.65401 1.47466 1.17166 1.43003 1.22402 1.21949 0.83752 1.01979 0.98620 1.22033 0.97924 0.93633 0.84492 1.23700 0.96617 0.96902 1.02072 1.21436 0.94028 0.95762 0.85384 1.42500 1.76878 1.14033 1.02353 1.19474 1.35251 0.92083 0.91430 0.91412 1.25356 1.03406 0.99675 0.96742 1.69897 1.54462 1.29942 1.03006 0.85351 0.76980 0.80931 0.78001 1.19887 1.23033 1.22395 1.24096 0.99102 0.94409 1.02333 0.93920 0.91823 0.89110 0.78595 0.78320 0.91888 0.91507 0.89277 0.89092 0.94362 0.86795 0.92055 0.77651 0.94685 0.86330 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 11.13 113.37 1.26 2.82 16 2 O -0.31 -13.49 9.73 -90.30 -0.88 -14.37 16 3 C 0.12 4.26 5.74 22.87 0.13 4.39 16 4 C 0.06 1.64 7.30 22.42 0.16 1.81 16 5 F -0.13 -4.36 17.11 44.97 0.77 -3.59 16 6 C -0.08 -1.47 10.00 22.33 0.22 -1.25 16 7 C -0.11 -2.02 10.00 22.28 0.22 -1.80 16 8 C 0.12 3.32 6.85 22.66 0.16 3.48 16 9 F -0.13 -3.59 16.83 44.97 0.76 -2.83 16 10 C -0.18 -6.14 3.91 -19.98 -0.08 -6.22 16 11 C 0.57 22.62 5.98 86.65 0.52 23.13 16 12 O -0.57 -24.93 15.83 -4.04 -0.06 -24.99 16 13 N -0.57 -21.33 2.08 -823.21 -1.71 -23.04 16 14 C 0.08 2.88 8.67 127.77 1.11 3.98 16 15 C 0.12 4.16 4.13 45.58 0.19 4.35 16 16 C -0.15 -5.62 7.13 31.12 0.22 -5.40 16 17 C 0.14 5.78 4.55 45.52 0.21 5.98 16 18 N -0.72 -35.50 4.06 -320.45 -1.30 -36.80 16 19 C -0.25 -13.57 9.97 84.04 0.84 -12.73 16 20 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 21 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 22 N -0.93 -53.69 13.06 21.65 0.28 -53.41 16 23 Si 0.96 45.73 29.55 68.60 2.03 47.76 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 27 C -0.16 -5.08 7.17 31.18 0.22 -4.86 16 28 H 0.04 1.60 7.90 -2.39 -0.02 1.58 16 29 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.06 2.88 6.14 -2.38 -0.01 2.86 16 34 H 0.07 2.19 6.50 -2.38 -0.02 2.18 16 35 H 0.09 2.79 6.56 -2.39 -0.02 2.77 16 36 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.04 1.67 7.19 -2.38 -0.02 1.66 16 38 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.06 2.40 8.12 -2.39 -0.02 2.39 16 40 H 0.39 20.33 5.52 -92.71 -0.51 19.82 16 41 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.12 2.92 8.14 -2.39 -0.02 2.91 16 43 H 0.07 2.40 5.90 -2.39 -0.01 2.39 16 Total: -1.00 -71.24 364.38 6.29 -64.96 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.56 Total: 31.31 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 5.85 Total: 15.00 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -2.73 Total: -113.25 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.94 Total: -39.36 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 1.53 Total: -6.42 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.24 6.29 -64.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999218133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.695 kcal (2) G-P(sol) polarization free energy of solvation -71.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds