Wall clock time and date at job start Sat Apr 11 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35708 * 116.99945 * 2 1 4 4 C 1.38832 * 120.14651 * 270.25733 * 3 2 1 5 5 F 1.35099 * 119.94087 * 0.02562 * 4 3 2 6 6 C 1.38261 * 120.11447 * 180.27601 * 4 3 2 7 7 C 1.38449 * 120.41316 * 359.76923 * 6 4 3 8 8 C 1.38098 * 120.28777 * 359.94941 * 7 6 4 9 9 F 1.35091 * 120.06200 * 180.02562 * 8 7 6 10 10 C 1.39991 * 119.87077 * 0.02594 * 8 7 6 11 11 C 1.47394 * 120.19376 * 180.02562 * 10 8 7 12 12 O 1.21610 * 120.00204 * 90.00463 * 11 10 8 13 13 N 1.34784 * 120.00019 * 269.99959 * 11 10 8 14 14 C 1.46923 * 120.62964 * 359.97438 * 13 11 10 15 15 C 1.53194 * 108.77322 * 126.36706 * 14 13 11 16 16 C 1.53041 * 109.30970 * 54.64020 * 15 14 13 17 17 C 1.53039 * 109.53647 * 298.63046 * 16 15 14 18 18 H 1.09003 * 109.49942 * 301.38469 * 17 16 15 19 19 N 1.46502 * 109.49794 * 181.31737 * 17 16 15 20 20 C 1.36937 * 119.99886 * 154.99753 * 19 17 16 21 21 H 1.08004 * 120.00309 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99861 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99848 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99834 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46878 * 90.00375 * 24 22 20 26 26 H 1.48502 * 109.47011 * 209.99533 * 24 22 20 27 27 H 1.48494 * 109.47204 * 329.99893 * 24 22 20 28 28 C 1.46927 * 120.62995 * 179.72134 * 13 11 10 29 29 H 1.09002 * 109.47401 * 60.00324 * 1 2 3 30 30 H 1.09008 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47176 * 299.99647 * 1 2 3 32 32 H 1.08001 * 119.79729 * 179.73859 * 6 4 3 33 33 H 1.07995 * 119.86160 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.59009 * 246.15627 * 14 13 11 35 35 H 1.09003 * 109.58381 * 6.44334 * 14 13 11 36 36 H 1.08996 * 109.49478 * 174.58662 * 15 14 13 37 37 H 1.08997 * 109.50060 * 294.68386 * 15 14 13 38 38 H 1.09000 * 109.46215 * 58.64833 * 16 15 14 39 39 H 1.08998 * 109.46247 * 178.62615 * 16 15 14 40 40 H 0.97000 * 120.00019 * 335.00512 * 19 17 16 41 41 H 0.96999 * 120.00046 * 180.02562 * 23 22 20 42 42 H 1.09003 * 109.58790 * 353.42296 * 28 13 11 43 43 H 1.09007 * 109.58432 * 113.84106 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3568 1.8329 -1.2005 5 9 2.0458 1.2352 -2.3715 6 6 2.9896 3.0621 -1.1998 7 6 3.3132 3.6832 -0.0054 8 6 3.0057 3.0806 1.1985 9 9 3.3231 3.6909 2.3612 10 6 2.3646 1.8362 1.2117 11 6 2.0326 1.1869 2.4927 12 8 0.9594 1.4014 3.0229 13 7 2.9184 0.3554 3.0763 14 6 4.2187 0.0860 2.4475 15 6 5.3274 0.3742 3.4646 16 6 5.0666 -0.4315 4.7394 17 6 3.7291 -0.0059 5.3492 18 1 3.7528 1.0614 5.5693 19 7 3.4952 -0.7552 6.5862 20 6 2.6834 -0.2351 7.5586 21 1 2.2152 0.7273 7.4136 22 6 2.4621 -0.9448 8.7310 23 7 1.6815 -0.4451 9.6654 24 14 3.2725 -2.6091 8.9822 25 1 4.5923 -2.4231 9.6370 26 1 2.4079 -3.4557 9.8430 27 1 3.4614 -3.2713 7.6666 28 6 2.6044 -0.2944 4.3560 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.2335 3.5408 -2.1367 33 1 3.8078 4.6431 -0.0153 34 1 4.2668 -0.9589 2.1408 35 1 4.3433 0.7288 1.5760 36 1 6.2909 0.0873 3.0436 37 1 5.3359 1.4380 3.7019 38 1 5.0336 -1.4937 4.4972 39 1 5.8672 -0.2470 5.4557 40 1 3.9154 -1.6197 6.7164 41 1 1.5272 -0.9409 10.4847 42 1 1.6652 0.0992 4.7449 43 1 2.5183 -1.3709 4.2078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999861468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:17 Heat of formation + Delta-G solvation = -133.426055 kcal Electronic energy + Delta-G solvation = -30680.507009 eV Core-core repulsion = 26169.005258 eV Total energy + Delta-G solvation = -4511.501751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.22050 -50.07851 -41.85947 -40.36961 -38.80829 -38.40970 -36.39525 -34.12577 -33.01633 -32.46464 -31.09478 -30.42627 -28.20331 -26.97352 -25.74387 -24.80422 -23.78973 -23.21543 -22.12017 -20.76544 -19.64104 -19.49033 -18.93988 -18.89120 -18.06117 -17.44157 -17.32405 -16.91696 -16.75499 -16.60876 -16.22270 -16.14150 -15.78998 -15.70255 -15.54297 -15.40315 -15.19395 -14.87433 -14.33991 -14.27056 -14.04066 -13.95342 -13.79485 -13.46118 -13.35974 -13.02628 -12.91988 -12.63080 -12.57758 -12.19842 -11.99199 -11.94026 -11.84236 -11.49368 -11.42602 -11.24729 -11.10318 -10.28162 -9.96605 -9.79150 -9.33368 -8.06420 -5.43345 -0.53871 -0.40622 1.20049 1.35850 1.41533 1.48369 1.69039 1.88357 2.35687 2.45722 2.84306 2.94682 3.18421 3.23915 3.45991 3.57809 3.72139 3.86200 3.94174 3.97752 4.01735 4.18879 4.20653 4.26176 4.28400 4.48343 4.51190 4.56835 4.61345 4.63349 4.74512 4.78407 4.81130 4.85533 4.94645 5.05871 5.29403 5.33070 5.34684 5.38673 5.71154 6.04195 6.16410 6.18924 6.83687 7.02145 7.73700 7.96983 9.15389 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.003168 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.589819 B = 8836.752454 C = 9121.420010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.339 6.339 3 C 0.109 3.891 4 C 0.072 3.928 5 F -0.125 7.125 6 C -0.071 4.071 7 C -0.105 4.105 8 C 0.119 3.881 9 F -0.135 7.135 10 C -0.167 4.167 11 C 0.560 3.440 12 O -0.579 6.579 13 N -0.589 5.589 14 C 0.103 3.897 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.170 3.830 18 H 0.030 0.970 19 N -0.741 5.741 20 C -0.241 4.241 21 H 0.043 0.957 22 C -0.063 4.063 23 N -0.985 5.985 24 Si 0.964 3.036 25 H -0.272 1.272 26 H -0.296 1.296 27 H -0.246 1.246 28 C 0.105 3.895 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.034 0.966 32 H 0.202 0.798 33 H 0.196 0.804 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.372 0.628 41 H 0.260 0.740 42 H 0.046 0.954 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 4.760 -30.683 32.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.256 6.256 3 C 0.063 3.937 4 C 0.052 3.948 5 F -0.103 7.103 6 C -0.090 4.090 7 C -0.123 4.123 8 C 0.099 3.901 9 F -0.114 7.114 10 C -0.171 4.171 11 C 0.347 3.653 12 O -0.460 6.460 13 N -0.320 5.320 14 C -0.018 4.018 15 C -0.159 4.159 16 C -0.159 4.159 17 C 0.061 3.939 18 H 0.048 0.952 19 N -0.385 5.385 20 C -0.372 4.372 21 H 0.061 0.939 22 C -0.254 4.254 23 N -0.634 5.634 24 Si 0.790 3.210 25 H -0.198 1.198 26 H -0.223 1.223 27 H -0.171 1.171 28 C -0.020 4.020 29 H 0.089 0.911 30 H 0.136 0.864 31 H 0.053 0.947 32 H 0.219 0.781 33 H 0.213 0.787 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.137 0.863 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.206 0.794 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.790 4.808 -30.268 31.883 hybrid contribution -0.757 -0.768 1.362 1.737 sum 8.033 4.040 -28.906 30.272 Atomic orbital electron populations 1.23283 0.76379 1.05316 1.01198 1.85963 1.21966 1.23603 1.94093 1.18429 0.98479 0.87062 0.89733 1.17958 1.03289 0.93669 0.79856 1.91543 1.91072 1.83381 1.44336 1.21508 0.94854 0.91337 1.01256 1.21398 1.00571 1.02647 0.87716 1.17819 0.98782 0.90169 0.83311 1.91570 1.90368 1.81963 1.47468 1.20016 1.06993 0.96738 0.93393 1.18304 0.83824 0.78744 0.84404 1.90812 1.25421 1.63918 1.65802 1.48223 1.17739 1.44001 1.22014 1.22075 0.80429 1.03191 0.96092 1.21875 0.99361 1.00389 0.94241 1.21799 0.95327 1.01133 0.97598 1.20537 0.93938 0.94820 0.84601 0.95204 1.42617 1.57560 1.21952 1.16333 1.18952 1.20555 1.01922 0.95737 0.93880 1.25627 1.00569 1.03198 0.96042 1.69919 1.43266 1.41127 1.09105 0.85288 0.77911 0.79174 0.78616 1.19810 1.22294 1.17052 1.22227 1.00156 0.96914 0.82681 0.91136 0.86365 0.94738 0.78123 0.78687 0.89077 0.88751 0.86303 0.92168 0.90194 0.90648 0.79397 0.93168 0.93539 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.13 113.37 1.26 1.95 16 2 O -0.34 -8.58 9.73 -90.28 -0.88 -9.46 16 3 C 0.11 2.47 5.74 22.87 0.13 2.60 16 4 C 0.07 1.15 7.30 22.42 0.16 1.31 16 5 F -0.12 -2.08 17.11 44.97 0.77 -1.31 16 6 C -0.07 -0.60 10.00 22.33 0.22 -0.37 16 7 C -0.11 -1.10 10.00 22.29 0.22 -0.87 16 8 C 0.12 2.52 7.14 22.66 0.16 2.69 16 9 F -0.14 -3.58 16.83 44.97 0.76 -2.83 16 10 C -0.17 -4.39 3.64 -19.98 -0.07 -4.46 16 11 C 0.56 20.07 6.31 86.65 0.55 20.61 16 12 O -0.58 -26.44 16.28 -4.06 -0.07 -26.51 16 13 N -0.59 -19.35 2.98 -823.55 -2.45 -21.81 16 14 C 0.10 2.31 6.34 86.36 0.55 2.86 16 15 C -0.12 -2.48 6.08 30.67 0.19 -2.30 16 16 C -0.12 -3.31 5.36 30.62 0.16 -3.14 16 17 C 0.17 6.78 2.91 44.94 0.13 6.91 16 18 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 19 N -0.74 -35.40 4.93 -323.18 -1.59 -36.99 16 20 C -0.24 -14.41 10.41 84.03 0.87 -13.53 16 21 H 0.04 2.93 8.06 -2.91 -0.02 2.90 16 22 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 23 N -0.98 -65.31 13.97 21.65 0.30 -65.01 16 24 Si 0.96 45.81 27.74 68.60 1.90 47.71 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 27 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 28 C 0.11 4.19 5.99 86.23 0.52 4.70 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.03 0.93 7.90 -2.39 -0.02 0.91 16 32 H 0.20 -0.03 8.06 -2.91 -0.02 -0.05 16 33 H 0.20 0.59 8.06 -2.91 -0.02 0.56 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.78 6.22 -2.39 -0.01 1.77 16 36 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.37 16.38 5.66 -92.71 -0.52 15.85 16 41 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 42 H 0.05 2.30 7.00 -2.39 -0.02 2.28 16 43 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 Total: -1.00 -84.74 366.63 4.74 -80.00 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.47 Total: 20.60 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.53 Total: 15.60 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -3.74 Total: -123.81 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.94 Total: -35.97 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 1.53 Total: -4.14 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.71 kcal Total: -84.74 4.74 -80.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999861468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.424 kcal (2) G-P(sol) polarization free energy of solvation -84.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds