Wall clock time and date at job start Sat Apr 11 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35710 * 117.00126 * 2 1 4 4 C 1.38820 * 120.14511 * 269.71969 * 3 2 1 5 5 F 1.35102 * 119.94137 * 0.02562 * 4 3 2 6 6 C 1.38267 * 120.11388 * 179.76385 * 4 3 2 7 7 C 1.38452 * 120.41133 * 0.51568 * 6 4 3 8 8 C 1.38086 * 120.28712 * 359.74156 * 7 6 4 9 9 F 1.35097 * 120.06443 * 179.97438 * 8 7 6 10 10 C 1.39996 * 119.87646 * 0.02562 * 8 7 6 11 11 C 1.47398 * 120.19997 * 180.02562 * 10 8 7 12 12 O 1.21604 * 119.99854 * 269.97785 * 11 10 8 13 13 N 1.34776 * 120.00116 * 89.97447 * 11 10 8 14 14 C 1.46926 * 120.62953 * 359.72086 * 13 11 10 15 15 C 1.52757 * 109.00850 * 233.58151 * 14 13 11 16 16 C 1.53043 * 109.38736 * 305.58860 * 15 14 13 17 17 C 1.53047 * 109.53205 * 61.23825 * 16 15 14 18 18 H 1.08997 * 109.50008 * 58.59159 * 17 16 15 19 19 N 1.46497 * 109.51967 * 178.66878 * 17 16 15 20 20 C 1.36938 * 120.00135 * 204.85755 * 19 17 16 21 21 H 1.08005 * 119.99906 * 359.97438 * 20 19 17 22 22 C 1.38816 * 120.00168 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99754 * 179.97438 * 22 20 19 24 24 Si 1.86790 * 119.99986 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47032 * 90.00225 * 24 22 20 26 26 H 1.48503 * 109.47178 * 210.00116 * 24 22 20 27 27 H 1.48494 * 109.47379 * 330.00286 * 24 22 20 28 28 C 1.46924 * 120.63082 * 179.97438 * 13 11 10 29 29 H 1.09002 * 109.47382 * 300.00134 * 1 2 3 30 30 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46926 * 60.00242 * 1 2 3 32 32 H 1.07999 * 119.79677 * 180.25554 * 6 4 3 33 33 H 1.08000 * 119.85521 * 179.71742 * 7 6 4 34 34 H 1.09001 * 109.58738 * 353.41929 * 14 13 11 35 35 H 1.08997 * 109.58346 * 113.84171 * 14 13 11 36 36 H 1.09000 * 109.56556 * 185.55502 * 15 14 13 37 37 H 1.08998 * 109.38931 * 65.51927 * 15 14 13 38 38 H 1.08998 * 109.45960 * 301.22582 * 16 15 14 39 39 H 1.08996 * 109.46083 * 181.25920 * 16 15 14 40 40 H 0.97000 * 120.00395 * 24.85234 * 19 17 16 41 41 H 0.97001 * 119.99816 * 179.97438 * 23 22 20 42 42 H 1.08997 * 109.58971 * 246.15973 * 28 13 11 43 43 H 1.09001 * 109.58868 * 6.58540 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 2.3669 1.8277 -1.2004 5 9 2.0657 1.2250 -2.3715 6 6 2.9903 3.0618 -1.1997 7 6 3.3081 3.6858 -0.0053 8 6 3.0006 3.0833 1.1985 9 9 3.3132 3.6959 2.3613 10 6 2.3651 1.8360 1.2118 11 6 2.0330 1.1867 2.4928 12 8 2.8342 0.4405 3.0219 13 7 0.8413 1.4201 3.0776 14 6 -0.1345 2.3239 2.4536 15 6 -0.5489 3.3867 3.4696 16 6 -1.0500 2.7033 4.7439 17 6 0.0768 1.8647 5.3518 18 1 0.9300 2.5064 5.5715 19 7 -0.3935 1.2360 6.5886 20 6 0.5043 0.8766 7.5582 21 1 1.5590 1.0562 7.4109 22 6 0.0587 0.2804 8.7300 23 7 0.9217 -0.0656 9.6616 24 14 -1.7654 -0.0309 8.9845 25 1 -2.1159 -1.3754 8.4604 26 1 -2.0809 0.0330 10.4342 27 1 -2.5495 1.0021 8.2613 28 6 0.4957 0.7798 4.3540 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 3.2345 3.5403 -2.1366 33 1 3.7991 4.6477 -0.0152 34 1 0.3163 2.8058 1.5860 35 1 -1.0121 1.7565 2.1439 36 1 -1.3447 4.0022 3.0500 37 1 0.3098 4.0146 3.7071 38 1 -1.8935 2.0569 4.5017 39 1 -1.3670 3.4602 5.4613 40 1 -1.3407 1.0744 6.7209 41 1 0.6104 -0.4818 10.4806 42 1 -0.3295 0.0841 4.2023 43 1 1.3624 0.2432 4.7401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999861472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:21 Heat of formation + Delta-G solvation = -132.130238 kcal Electronic energy + Delta-G solvation = -30835.186573 eV Core-core repulsion = 26323.741013 eV Total energy + Delta-G solvation = -4511.445560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.21854 -50.07177 -41.91484 -40.32908 -38.87092 -38.37747 -36.41863 -34.12967 -33.03668 -32.45631 -31.11506 -30.46246 -28.12846 -27.02904 -25.73725 -24.79553 -23.80456 -23.21986 -22.12396 -20.80443 -19.66802 -19.40534 -18.98139 -18.89235 -18.02604 -17.63194 -17.17779 -16.95810 -16.73888 -16.60227 -16.25815 -16.09990 -15.76662 -15.69243 -15.53955 -15.39673 -15.23091 -14.88449 -14.43707 -14.32202 -14.02302 -13.95380 -13.68378 -13.43703 -13.35733 -13.00902 -12.98378 -12.66634 -12.49898 -12.13107 -12.00138 -11.94399 -11.84592 -11.49462 -11.44443 -11.20361 -11.09103 -10.28773 -9.98511 -9.77999 -9.33450 -8.06341 -5.43465 -0.52239 -0.39714 1.20282 1.35410 1.41643 1.48751 1.69692 1.89964 2.25282 2.45902 2.88268 2.97287 3.17768 3.24186 3.45128 3.58299 3.73572 3.86971 3.92512 3.95231 4.00517 4.16741 4.18671 4.27443 4.30706 4.46694 4.52508 4.58032 4.60812 4.68657 4.75088 4.77270 4.80814 4.85909 4.93458 5.06105 5.29844 5.32963 5.35919 5.38689 5.71304 6.08707 6.15801 6.17818 6.84487 7.02472 7.73722 7.97195 9.15562 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.003206 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.933916 B = 8732.615084 C = 9013.466789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.349 6.349 3 C 0.112 3.888 4 C 0.070 3.930 5 F -0.125 7.125 6 C -0.070 4.070 7 C -0.106 4.106 8 C 0.120 3.880 9 F -0.136 7.136 10 C -0.169 4.169 11 C 0.560 3.440 12 O -0.579 6.579 13 N -0.591 5.591 14 C 0.097 3.903 15 C -0.121 4.121 16 C -0.120 4.120 17 C 0.170 3.830 18 H 0.027 0.973 19 N -0.741 5.741 20 C -0.241 4.241 21 H 0.041 0.959 22 C -0.064 4.064 23 N -0.985 5.985 24 Si 0.965 3.035 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.241 1.241 28 C 0.105 3.895 29 H 0.056 0.944 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.202 0.798 33 H 0.196 0.804 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.372 0.628 41 H 0.259 0.741 42 H 0.078 0.922 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 12.430 -30.650 33.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.266 6.266 3 C 0.066 3.934 4 C 0.050 3.950 5 F -0.104 7.104 6 C -0.088 4.088 7 C -0.124 4.124 8 C 0.100 3.900 9 F -0.114 7.114 10 C -0.174 4.174 11 C 0.347 3.653 12 O -0.459 6.459 13 N -0.323 5.323 14 C -0.024 4.024 15 C -0.159 4.159 16 C -0.158 4.158 17 C 0.061 3.939 18 H 0.045 0.955 19 N -0.384 5.384 20 C -0.372 4.372 21 H 0.059 0.941 22 C -0.256 4.256 23 N -0.635 5.635 24 Si 0.791 3.209 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.165 1.165 28 C -0.021 4.021 29 H 0.075 0.925 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.219 0.781 33 H 0.213 0.787 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.139 0.861 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.207 0.793 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.930 11.837 -30.235 32.842 hybrid contribution -0.344 -0.960 1.394 1.727 sum -5.274 10.877 -28.841 31.272 Atomic orbital electron populations 1.23512 0.75793 1.05552 1.02357 1.86035 1.22778 1.23619 1.94131 1.18413 0.98350 0.86848 0.89750 1.17948 1.03528 0.93682 0.79829 1.91541 1.91276 1.83218 1.44345 1.21506 0.94788 0.91309 1.01244 1.21388 1.00426 1.02924 0.87711 1.17818 0.99076 0.89845 0.83303 1.91571 1.90493 1.81860 1.47480 1.19989 1.07656 0.96357 0.93390 1.18330 0.81776 0.80727 0.84427 1.90824 1.50066 1.39193 1.65779 1.48252 1.15659 1.45936 1.22411 1.22139 0.92331 0.91488 0.96437 1.21804 1.02594 0.97264 0.94277 1.21795 0.97145 0.99253 0.97579 1.20629 0.96695 0.92006 0.84595 0.95465 1.42594 1.05359 1.74005 1.16467 1.18945 0.89832 1.32332 0.96126 0.94068 1.25653 1.03122 1.00740 0.96036 1.69926 1.35713 1.48555 1.09298 0.85273 0.79621 0.78982 0.77024 1.20333 1.22175 1.16457 1.22326 1.00087 0.96919 0.82719 0.92543 0.87132 0.90561 0.78128 0.78699 0.88622 0.88197 0.86055 0.92372 0.89840 0.90884 0.79338 0.93183 0.90354 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.13 113.37 1.26 1.61 16 2 O -0.35 -8.93 9.73 -90.31 -0.88 -9.81 16 3 C 0.11 2.57 5.74 22.87 0.13 2.70 16 4 C 0.07 1.12 7.30 22.42 0.16 1.29 16 5 F -0.13 -2.11 17.11 44.97 0.77 -1.34 16 6 C -0.07 -0.59 10.00 22.33 0.22 -0.37 16 7 C -0.11 -1.12 10.00 22.28 0.22 -0.89 16 8 C 0.12 2.55 7.13 22.66 0.16 2.71 16 9 F -0.14 -3.61 16.83 44.97 0.76 -2.85 16 10 C -0.17 -4.48 3.65 -19.98 -0.07 -4.55 16 11 C 0.56 20.16 6.31 86.66 0.55 20.70 16 12 O -0.58 -27.73 16.52 -4.04 -0.07 -27.79 16 13 N -0.59 -18.33 2.86 -823.59 -2.36 -20.69 16 14 C 0.10 1.86 4.98 86.22 0.43 2.29 16 15 C -0.12 -2.24 6.06 30.53 0.19 -2.06 16 16 C -0.12 -3.08 5.36 30.62 0.16 -2.91 16 17 C 0.17 6.59 2.92 45.09 0.13 6.72 16 18 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 19 N -0.74 -34.80 4.93 -322.49 -1.59 -36.39 16 20 C -0.24 -14.39 10.41 84.03 0.88 -13.52 16 21 H 0.04 2.81 8.06 -2.91 -0.02 2.78 16 22 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 23 N -0.99 -65.43 13.97 21.65 0.30 -65.13 16 24 Si 0.97 45.40 27.73 68.60 1.90 47.30 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.24 -9.79 6.52 99.48 0.65 -9.14 16 28 C 0.10 4.02 6.02 86.38 0.52 4.54 16 29 H 0.06 0.93 5.10 -2.39 -0.01 0.92 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.20 -0.01 8.06 -2.91 -0.02 -0.04 16 33 H 0.20 0.61 8.06 -2.91 -0.02 0.58 16 34 H 0.10 1.48 6.22 -2.39 -0.01 1.47 16 35 H 0.10 1.41 6.90 -2.39 -0.02 1.39 16 36 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 40 H 0.37 16.00 5.66 -92.71 -0.52 15.48 16 41 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 42 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.04 2.11 7.00 -2.39 -0.02 2.10 16 Total: -1.00 -88.34 361.37 4.73 -83.61 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.48 Total: 18.25 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 5.41 Total: 14.83 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -3.65 Total: -122.21 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.95 Total: -37.60 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 1.53 Total: -4.19 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.30 kcal Total: -88.34 4.73 -83.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999861472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.517 kcal (2) G-P(sol) polarization free energy of solvation -88.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds