Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35715 * 116.99827 * 2 1 4 4 C 1.38940 * 119.86442 * 180.02562 * 3 2 1 5 5 C 1.37965 * 120.13466 * 179.97438 * 4 3 2 6 6 F 1.35102 * 120.06613 * 179.97438 * 5 4 3 7 7 C 1.40059 * 119.86335 * 0.02562 * 5 4 3 8 8 C 1.47307 * 120.12939 * 180.02562 * 7 5 4 9 9 O 1.21610 * 120.00023 * 90.00225 * 8 7 5 10 10 N 1.34778 * 119.99689 * 269.99631 * 8 7 5 11 11 C 1.46927 * 120.62969 * 359.72304 * 10 8 7 12 12 C 1.53627 * 108.53974 * 126.37125 * 11 10 8 13 13 C 1.53039 * 109.24455 * 54.85540 * 12 11 10 14 14 C 1.53037 * 109.53443 * 298.50924 * 13 12 11 15 15 H 1.08999 * 109.49888 * 301.41346 * 14 13 12 16 16 N 1.46507 * 109.52030 * 181.33195 * 14 13 12 17 17 C 1.36937 * 119.99972 * 155.14739 * 16 14 13 18 18 H 1.08010 * 119.99807 * 359.97438 * 17 16 14 19 19 C 1.38805 * 120.00158 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00270 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00167 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47064 * 89.99598 * 21 19 17 23 23 H 1.48498 * 109.47460 * 209.99845 * 21 19 17 24 24 H 1.48508 * 109.46949 * 330.00116 * 21 19 17 25 25 C 1.46927 * 120.63172 * 180.02562 * 10 8 7 26 26 C 1.40059 * 119.73218 * 359.97438 * 7 5 4 27 27 F 1.35107 * 120.06306 * 179.97438 * 26 7 5 28 28 C 1.37958 * 119.86857 * 359.97438 * 26 7 5 29 29 H 1.08997 * 109.47234 * 60.00558 * 1 2 3 30 30 H 1.09000 * 109.47126 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47311 * 300.00220 * 1 2 3 32 32 H 1.08008 * 119.93030 * 0.24960 * 4 3 2 33 33 H 1.09007 * 109.58425 * 246.19785 * 11 10 8 34 34 H 1.08999 * 109.58921 * 6.62720 * 11 10 8 35 35 H 1.08997 * 109.63203 * 294.86079 * 12 11 10 36 36 H 1.09006 * 109.45357 * 174.74237 * 12 11 10 37 37 H 1.09002 * 109.46055 * 178.48886 * 13 12 11 38 38 H 1.08999 * 109.44591 * 58.52143 * 13 12 11 39 39 H 0.96995 * 119.99916 * 335.14670 * 16 14 13 40 40 H 0.97000 * 120.00089 * 179.97438 * 20 19 17 41 41 H 1.09005 * 109.58249 * 353.37243 * 25 10 8 42 42 H 1.08996 * 109.58727 * 113.79396 * 25 10 8 43 43 H 1.08002 * 119.93577 * 180.02562 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4327 1.2787 -0.0005 5 6 4.0648 2.5050 -0.0011 6 9 5.4142 2.5710 -0.0011 7 6 3.3047 3.6814 -0.0005 8 6 3.9735 4.9939 -0.0017 9 8 4.2483 5.5354 -1.0553 10 7 4.2807 5.5947 1.1651 11 6 3.9495 4.9557 2.4460 12 6 5.2262 4.8763 3.2968 13 6 5.8310 6.2757 3.4307 14 6 6.2082 6.8048 2.0451 15 1 6.9185 6.1237 1.5765 16 7 6.8163 8.1313 2.1766 17 6 7.6733 8.5901 1.2122 18 1 7.9014 7.9740 0.3549 19 6 8.2499 9.8466 1.3369 20 7 7.9724 10.5973 2.3818 21 14 9.4197 10.4723 0.0217 22 1 8.6506 11.2018 -1.0184 23 1 10.4123 11.3891 0.6375 24 1 10.1260 9.3232 -0.5998 25 6 4.9473 6.9039 1.1802 26 6 1.9062 3.6048 0.0000 27 9 1.1664 4.7353 0.0011 28 6 1.2856 2.3727 -0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0177 0.3708 -0.0050 33 1 3.1968 5.5484 2.9661 34 1 3.5661 3.9515 2.2651 35 1 5.9457 4.2133 2.8164 36 1 4.9798 4.4902 4.2860 37 1 6.7224 6.2277 4.0562 38 1 5.1017 6.9439 3.8885 39 1 6.6117 8.6844 2.9466 40 1 8.3757 11.4751 2.4692 41 1 5.2225 7.1856 0.1638 42 1 4.2742 7.6518 1.5992 43 1 0.2073 2.3123 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000272691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = -115.701185 kcal Electronic energy + Delta-G solvation = -30168.087707 eV Core-core repulsion = 25657.354564 eV Total energy + Delta-G solvation = -4510.733143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.40575 -49.33951 -40.72410 -39.87659 -37.65309 -36.99352 -34.46329 -32.36874 -31.32960 -31.13833 -30.75704 -28.35157 -27.89152 -25.45454 -24.03051 -23.51955 -23.13470 -21.89309 -20.57688 -19.38408 -19.08896 -18.10415 -17.51614 -17.07072 -16.84131 -16.70697 -16.32359 -16.18487 -15.74235 -15.63670 -15.23966 -15.02216 -14.92805 -14.47813 -14.14852 -14.06853 -13.60803 -13.41165 -13.24592 -12.89770 -12.82305 -12.77064 -12.47639 -12.36881 -12.24010 -11.93357 -11.43904 -11.29602 -11.01948 -10.82547 -10.65683 -10.57913 -10.19003 -9.93002 -9.82330 -9.63763 -9.33397 -9.07039 -8.85541 -8.38309 -6.98912 -5.77063 -3.06830 0.42556 0.47192 2.43120 2.54744 2.75415 3.12315 3.43894 3.47206 3.52410 3.54339 3.86163 4.22760 4.28784 4.36813 4.53527 4.59561 4.59973 4.63722 4.89976 4.94826 5.07026 5.18128 5.29440 5.34271 5.40510 5.49325 5.52268 5.54204 5.62143 5.80065 5.90920 6.00715 6.04617 6.17137 6.21236 6.35598 6.48136 6.61368 6.69846 6.82577 7.00276 7.54415 7.74080 8.22352 8.41168 9.53056 10.06482 10.42074 11.45148 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.002771 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.406313 B =10103.997489 C =10227.912644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.302 6.302 3 C 0.199 3.801 4 C -0.200 4.200 5 C 0.204 3.796 6 F -0.110 7.110 7 C -0.225 4.225 8 C 0.562 3.438 9 O -0.522 6.522 10 N -0.592 5.592 11 C 0.107 3.893 12 C -0.129 4.129 13 C -0.126 4.126 14 C 0.169 3.831 15 H 0.052 0.948 16 N -0.717 5.717 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.092 3.908 26 C 0.203 3.797 27 F -0.116 7.116 28 C -0.259 4.259 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.158 0.842 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.911 -23.978 0.558 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.214 6.214 3 C 0.152 3.848 4 C -0.220 4.220 5 C 0.183 3.817 6 F -0.088 7.088 7 C -0.230 4.230 8 C 0.347 3.653 9 O -0.398 6.398 10 N -0.324 5.324 11 C -0.016 4.016 12 C -0.168 4.168 13 C -0.164 4.164 14 C 0.057 3.943 15 H 0.070 0.930 16 N -0.358 5.358 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.032 4.032 26 C 0.182 3.818 27 F -0.094 7.094 28 C -0.279 4.279 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.175 0.825 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.503 -23.754 -0.132 29.506 hybrid contribution 0.303 0.965 -0.446 1.105 sum -17.200 -22.789 -0.578 28.557 Atomic orbital electron populations 1.23248 0.77178 1.04806 1.02127 1.86088 1.22348 1.25587 1.87403 1.18311 0.91005 0.84060 0.91455 1.20178 0.92382 0.97692 1.11720 1.16756 0.77359 0.91418 0.96139 1.91629 1.27476 1.96981 1.92731 1.19896 0.92968 0.95145 1.15027 1.17662 0.79264 0.83855 0.84505 1.90839 1.53319 1.64873 1.30752 1.48261 1.57901 1.21455 1.04833 1.21836 0.97735 0.97625 0.84420 1.21954 0.96737 0.98621 0.99453 1.21824 1.00881 0.94972 0.98726 1.20499 0.92014 0.89151 0.92603 0.92960 1.42375 1.52534 1.14293 1.26563 1.19281 1.18244 0.98993 1.00799 0.91008 1.24744 1.00850 0.97037 0.98049 1.69662 1.47768 1.11279 1.29334 0.86186 0.80493 0.78542 0.80985 1.21592 1.21767 1.20647 1.22906 0.95228 0.80991 1.04084 1.16827 0.86550 0.82256 0.96127 1.91600 1.75965 1.48985 1.92826 1.21085 1.01812 0.90375 1.14588 0.91909 0.87474 0.91883 0.82470 0.91028 0.90849 0.91407 0.90876 0.91236 0.91958 0.78036 0.93474 0.88951 0.91680 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.80 101.05 0.99 1.06 16 2 O -0.30 -2.05 10.48 -18.85 -0.20 -2.25 16 3 C 0.20 1.62 6.69 -39.06 -0.26 1.36 16 4 C -0.20 -1.82 9.94 -39.42 -0.39 -2.21 16 5 C 0.20 2.45 7.15 -39.00 -0.28 2.17 16 6 F -0.11 -1.51 16.83 2.25 0.04 -1.48 16 7 C -0.22 -3.08 3.63 -104.84 -0.38 -3.46 16 8 C 0.56 9.96 6.41 -12.57 -0.08 9.88 16 9 O -0.52 -11.44 16.52 5.27 0.09 -11.35 16 10 N -0.59 -9.84 2.97 -173.79 -0.52 -10.36 16 11 C 0.11 1.35 6.37 -3.48 -0.02 1.33 16 12 C -0.13 -1.61 6.10 -26.39 -0.16 -1.78 16 13 C -0.13 -2.01 5.35 -26.69 -0.14 -2.15 16 14 C 0.17 3.43 2.92 -67.79 -0.20 3.23 16 15 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 16 N -0.72 -18.04 5.13 -53.29 -0.27 -18.32 16 17 C -0.24 -6.85 9.93 -15.06 -0.15 -7.00 16 18 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 21 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.09 1.81 6.02 -3.69 -0.02 1.79 16 26 C 0.20 2.34 7.28 -39.00 -0.28 2.06 16 27 F -0.12 -1.49 16.83 2.25 0.04 -1.45 16 28 C -0.26 -2.14 8.99 -39.43 -0.35 -2.49 16 29 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 30 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.14 7.65 -51.93 -0.40 -0.26 16 32 H 0.16 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.07 0.79 6.23 -51.93 -0.32 0.47 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.39 10.14 7.80 -40.82 -0.32 9.82 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.09 2.12 7.00 -51.93 -0.36 1.76 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.15 0.84 6.27 -52.49 -0.33 0.51 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -34.19 366.62 -6.91 -41.10 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.48 Total: 4.77 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.83 Total: 3.37 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.06 Total: -56.21 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.11 Total: -13.60 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.08 Total: -2.93 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.19 -6.91 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000272691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.602 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds