Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35715 * 116.99827 * 2 1 4 4 C 1.38940 * 119.86442 * 180.02562 * 3 2 1 5 5 C 1.37965 * 120.13466 * 179.97438 * 4 3 2 6 6 F 1.35102 * 120.06613 * 179.97438 * 5 4 3 7 7 C 1.40059 * 119.86335 * 0.02562 * 5 4 3 8 8 C 1.47307 * 120.12939 * 180.02562 * 7 5 4 9 9 O 1.21610 * 120.00023 * 90.00225 * 8 7 5 10 10 N 1.34778 * 119.99689 * 269.99631 * 8 7 5 11 11 C 1.46927 * 120.62969 * 359.72304 * 10 8 7 12 12 C 1.53627 * 108.53974 * 126.37125 * 11 10 8 13 13 C 1.53039 * 109.24455 * 54.85540 * 12 11 10 14 14 C 1.53037 * 109.53443 * 298.50924 * 13 12 11 15 15 H 1.08999 * 109.49888 * 301.41346 * 14 13 12 16 16 N 1.46507 * 109.52030 * 181.33195 * 14 13 12 17 17 C 1.36937 * 119.99972 * 155.14739 * 16 14 13 18 18 H 1.08010 * 119.99807 * 359.97438 * 17 16 14 19 19 C 1.38805 * 120.00158 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00270 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00167 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47064 * 89.99598 * 21 19 17 23 23 H 1.48498 * 109.47460 * 209.99845 * 21 19 17 24 24 H 1.48508 * 109.46949 * 330.00116 * 21 19 17 25 25 C 1.46927 * 120.63172 * 180.02562 * 10 8 7 26 26 C 1.40059 * 119.73218 * 359.97438 * 7 5 4 27 27 F 1.35107 * 120.06306 * 179.97438 * 26 7 5 28 28 C 1.37958 * 119.86857 * 359.97438 * 26 7 5 29 29 H 1.08997 * 109.47234 * 60.00558 * 1 2 3 30 30 H 1.09000 * 109.47126 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47311 * 300.00220 * 1 2 3 32 32 H 1.08008 * 119.93030 * 0.24960 * 4 3 2 33 33 H 1.09007 * 109.58425 * 246.19785 * 11 10 8 34 34 H 1.08999 * 109.58921 * 6.62720 * 11 10 8 35 35 H 1.08997 * 109.63203 * 294.86079 * 12 11 10 36 36 H 1.09006 * 109.45357 * 174.74237 * 12 11 10 37 37 H 1.09002 * 109.46055 * 178.48886 * 13 12 11 38 38 H 1.08999 * 109.44591 * 58.52143 * 13 12 11 39 39 H 0.96995 * 119.99916 * 335.14670 * 16 14 13 40 40 H 0.97000 * 120.00089 * 179.97438 * 20 19 17 41 41 H 1.09005 * 109.58249 * 353.37243 * 25 10 8 42 42 H 1.08996 * 109.58727 * 113.79396 * 25 10 8 43 43 H 1.08002 * 119.93577 * 180.02562 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4327 1.2787 -0.0005 5 6 4.0648 2.5050 -0.0011 6 9 5.4142 2.5710 -0.0011 7 6 3.3047 3.6814 -0.0005 8 6 3.9735 4.9939 -0.0017 9 8 4.2483 5.5354 -1.0553 10 7 4.2807 5.5947 1.1651 11 6 3.9495 4.9557 2.4460 12 6 5.2262 4.8763 3.2968 13 6 5.8310 6.2757 3.4307 14 6 6.2082 6.8048 2.0451 15 1 6.9185 6.1237 1.5765 16 7 6.8163 8.1313 2.1766 17 6 7.6733 8.5901 1.2122 18 1 7.9014 7.9740 0.3549 19 6 8.2499 9.8466 1.3369 20 7 7.9724 10.5973 2.3818 21 14 9.4197 10.4723 0.0217 22 1 8.6506 11.2018 -1.0184 23 1 10.4123 11.3891 0.6375 24 1 10.1260 9.3232 -0.5998 25 6 4.9473 6.9039 1.1802 26 6 1.9062 3.6048 0.0000 27 9 1.1664 4.7353 0.0011 28 6 1.2856 2.3727 -0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0177 0.3708 -0.0050 33 1 3.1968 5.5484 2.9661 34 1 3.5661 3.9515 2.2651 35 1 5.9457 4.2133 2.8164 36 1 4.9798 4.4902 4.2860 37 1 6.7224 6.2277 4.0562 38 1 5.1017 6.9439 3.8885 39 1 6.6117 8.6844 2.9466 40 1 8.3757 11.4751 2.4692 41 1 5.2225 7.1856 0.1638 42 1 4.2742 7.6518 1.5992 43 1 0.2073 2.3123 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000272691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = -138.753749 kcal Electronic energy + Delta-G solvation = -30169.087342 eV Core-core repulsion = 25657.354564 eV Total energy + Delta-G solvation = -4511.732777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.32152 -50.29685 -41.61965 -40.94539 -38.89538 -38.00292 -36.26640 -34.02374 -32.80965 -32.06296 -31.70289 -29.95187 -28.41444 -26.70341 -25.93111 -24.48502 -23.94381 -23.34553 -21.96050 -20.59856 -19.93326 -19.18282 -18.91843 -18.70597 -17.72647 -17.50786 -17.18479 -17.15882 -16.75657 -16.58855 -16.49508 -16.17267 -16.04273 -15.64037 -15.57029 -15.49811 -15.21119 -15.10928 -14.17438 -14.04603 -13.91805 -13.78133 -13.63376 -13.31089 -13.27615 -13.12998 -12.93016 -12.57800 -12.39044 -12.24476 -12.13502 -11.97690 -11.90425 -11.75114 -11.40664 -11.26750 -11.09105 -10.11830 -9.89501 -9.62595 -9.06655 -8.01131 -5.30656 -0.40468 -0.29745 1.21660 1.42322 1.44449 1.52640 1.75571 1.88485 2.07396 2.51225 2.62932 3.08507 3.16146 3.31685 3.59216 3.63260 3.67885 3.89819 3.93827 3.97103 4.11396 4.25533 4.31245 4.31642 4.45248 4.48339 4.50987 4.52575 4.65061 4.67310 4.80291 4.81698 4.84574 4.85944 4.97268 5.07581 5.24258 5.31767 5.36635 5.40182 5.49489 6.08411 6.20747 6.21904 6.86344 7.28375 7.99032 8.25744 9.21332 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.002771 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.406313 B =10103.997489 C =10227.912644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.305 6.305 3 C 0.215 3.785 4 C -0.187 4.187 5 C 0.190 3.810 6 F -0.128 7.128 7 C -0.249 4.249 8 C 0.557 3.443 9 O -0.581 6.581 10 N -0.591 5.591 11 C 0.102 3.898 12 C -0.119 4.119 13 C -0.117 4.117 14 C 0.169 3.831 15 H 0.030 0.970 16 N -0.727 5.727 17 C -0.247 4.247 18 H 0.063 0.937 19 C -0.066 4.066 20 N -0.962 5.962 21 Si 0.968 3.032 22 H -0.289 1.289 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.106 3.894 26 C 0.194 3.806 27 F -0.128 7.128 28 C -0.237 4.237 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.179 0.821 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.379 0.621 40 H 0.254 0.746 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.150 -27.244 1.517 33.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.216 6.216 3 C 0.167 3.833 4 C -0.206 4.206 5 C 0.170 3.830 6 F -0.106 7.106 7 C -0.254 4.254 8 C 0.344 3.656 9 O -0.461 6.461 10 N -0.322 5.322 11 C -0.019 4.019 12 C -0.157 4.157 13 C -0.155 4.155 14 C 0.059 3.941 15 H 0.048 0.952 16 N -0.367 5.367 17 C -0.379 4.379 18 H 0.081 0.919 19 C -0.259 4.259 20 N -0.612 5.612 21 Si 0.797 3.203 22 H -0.216 1.216 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.020 4.020 26 C 0.173 3.827 27 F -0.107 7.107 28 C -0.256 4.256 29 H 0.091 0.909 30 H 0.146 0.854 31 H 0.096 0.904 32 H 0.196 0.804 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.212 0.788 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -19.779 -27.093 0.855 33.555 hybrid contribution 0.850 1.792 -0.757 2.123 sum -18.929 -25.301 0.099 31.598 Atomic orbital electron populations 1.23646 0.74944 1.06760 1.03354 1.86121 1.24562 1.24417 1.86545 1.18315 0.90682 0.84685 0.89627 1.20338 0.93156 0.97047 1.10039 1.16889 0.76625 0.91931 0.97567 1.91582 1.28828 1.97103 1.93120 1.19612 0.93948 0.93115 1.18731 1.18350 0.78456 0.85067 0.83687 1.90791 1.55752 1.66792 1.32770 1.48318 1.57013 1.20289 1.06586 1.22187 0.98346 0.99060 0.82357 1.21936 0.96158 0.95973 1.01661 1.21733 1.01294 0.97251 0.95233 1.20632 0.91295 0.86671 0.95521 0.95164 1.42482 1.52681 1.15893 1.25673 1.19496 1.18330 0.99060 1.00997 0.91890 1.25479 1.02842 0.97373 1.00215 1.69785 1.49041 1.11459 1.30907 0.85236 0.78584 0.77979 0.78550 1.21579 1.21301 1.19954 1.22365 0.95323 0.83036 1.01231 1.16970 0.85618 0.82998 0.97096 1.91569 1.76030 1.49959 1.93096 1.21331 1.03384 0.88732 1.12139 0.90890 0.85400 0.90370 0.80377 0.89111 0.88256 0.92034 0.86605 0.91521 0.91059 0.78823 0.93738 0.93261 0.91660 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.80 113.37 1.11 1.12 16 2 O -0.30 -2.76 10.48 -90.36 -0.95 -3.70 16 3 C 0.22 2.67 6.69 22.61 0.15 2.83 16 4 C -0.19 -2.87 9.94 22.37 0.22 -2.65 16 5 C 0.19 4.39 7.15 22.65 0.16 4.55 16 6 F -0.13 -3.56 16.83 44.97 0.76 -2.80 16 7 C -0.25 -6.72 3.63 -20.01 -0.07 -6.80 16 8 C 0.56 20.59 6.41 86.63 0.56 21.14 16 9 O -0.58 -27.38 16.52 -4.06 -0.07 -27.45 16 10 N -0.59 -20.13 2.97 -821.99 -2.44 -22.57 16 11 C 0.10 2.38 6.37 86.51 0.55 2.93 16 12 C -0.12 -2.71 6.10 30.82 0.19 -2.52 16 13 C -0.12 -3.65 5.35 30.62 0.16 -3.49 16 14 C 0.17 7.13 2.92 45.08 0.13 7.26 16 15 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 16 N -0.73 -38.09 5.13 -322.51 -1.65 -39.75 16 17 C -0.25 -14.53 9.93 84.03 0.83 -13.70 16 18 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 19 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 20 N -0.96 -59.66 13.06 21.65 0.28 -59.38 16 21 Si 0.97 48.44 29.55 68.60 2.03 50.46 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 25 C 0.11 4.40 6.02 86.37 0.52 4.92 16 26 C 0.19 4.15 7.28 22.65 0.16 4.31 16 27 F -0.13 -3.19 16.83 44.97 0.76 -2.44 16 28 C -0.24 -3.05 8.99 22.37 0.20 -2.84 16 29 H 0.07 0.02 7.65 -2.39 -0.02 0.00 16 30 H 0.13 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.08 -0.06 7.65 -2.38 -0.02 -0.08 16 32 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.10 1.88 6.23 -2.39 -0.01 1.86 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.38 20.62 7.80 -92.71 -0.72 19.89 16 40 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.05 2.46 7.00 -2.38 -0.02 2.44 16 42 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.19 1.12 6.27 -2.91 -0.02 1.10 16 Total: -1.00 -79.71 366.62 4.41 -75.31 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.34 Total: 18.71 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 5.35 Total: 13.60 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -3.81 Total: -121.69 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.01 Total: -31.15 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 1.51 Total: -5.24 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.46 kcal Total: -79.71 4.41 -75.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000272691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.447 kcal (2) G-P(sol) polarization free energy of solvation -79.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds