Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36003 * 116.99924 * 2 1 4 4 C 1.38697 * 119.96101 * 0.02562 * 3 2 1 5 5 C 1.38284 * 120.33546 * 180.02562 * 4 3 2 6 6 C 1.38194 * 120.23736 * 0.02562 * 5 4 3 7 7 F 1.35093 * 120.04811 * 179.97438 * 6 5 4 8 8 C 1.39912 * 119.90833 * 0.02562 * 6 5 4 9 9 C 1.47549 * 120.16279 * 179.97438 * 8 6 5 10 10 O 1.21595 * 119.99960 * 89.99745 * 9 8 6 11 11 N 1.34776 * 120.00384 * 270.00331 * 9 8 6 12 12 C 1.46500 * 120.00425 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.52297 * 325.08259 * 12 11 9 14 14 C 1.53039 * 109.50171 * 204.99503 * 12 11 9 15 15 C 1.53037 * 109.53818 * 178.68342 * 14 12 11 16 16 C 1.53189 * 109.31365 * 61.36696 * 15 14 12 17 17 N 1.46921 * 108.77762 * 305.36365 * 16 15 14 18 18 C 1.36934 * 120.63469 * 233.58705 * 17 16 15 19 19 H 1.07998 * 120.00441 * 152.04766 * 18 17 16 20 20 C 1.38816 * 119.99636 * 332.04749 * 18 17 16 21 21 N 1.31619 * 119.99916 * 335.35255 * 20 18 17 22 22 Si 1.86804 * 119.99904 * 155.34611 * 20 18 17 23 23 H 1.48496 * 109.47019 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.46883 * 60.00313 * 22 20 18 25 25 H 1.48498 * 109.47151 * 300.00215 * 22 20 18 26 26 C 1.46932 * 118.73683 * 53.86047 * 17 16 15 27 27 C 1.38664 * 119.95339 * 180.33011 * 3 2 1 28 28 F 1.35101 * 120.12109 * 359.97438 * 27 3 2 29 29 H 1.09006 * 109.47497 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46982 * 299.99371 * 1 2 3 31 31 H 1.08996 * 109.47551 * 59.99372 * 1 2 3 32 32 H 1.08010 * 119.83693 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.88192 * 180.02562 * 5 4 3 34 34 H 0.96998 * 119.99690 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.45666 * 58.66357 * 14 12 11 36 36 H 1.08997 * 109.44609 * 298.70228 * 14 12 11 37 37 H 1.09003 * 109.49904 * 301.41173 * 15 14 12 38 38 H 1.09001 * 109.49610 * 181.32284 * 15 14 12 39 39 H 1.08998 * 109.58811 * 185.57726 * 16 15 14 40 40 H 1.08995 * 109.58483 * 65.15412 * 16 15 14 41 41 H 0.96994 * 120.00052 * 354.24148 * 21 20 18 42 42 H 1.08998 * 109.58755 * 65.92703 * 26 17 16 43 43 H 1.09004 * 109.58577 * 186.35259 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2902 2.3745 0.0005 5 6 1.9100 3.6107 0.0000 6 6 3.2892 3.6978 -0.0016 7 9 3.8906 4.9074 -0.0026 8 6 4.0618 2.5313 -0.0032 9 6 5.5348 2.6178 -0.0055 10 8 6.1433 2.6531 1.0466 11 7 6.2057 2.6577 -1.1737 12 6 7.6682 2.7441 -1.1760 13 1 7.9985 3.3525 -0.3340 14 6 8.1402 3.3830 -2.4841 15 6 9.6657 3.5037 -2.4735 16 6 10.2838 2.1060 -2.3675 17 7 9.7239 1.4293 -1.1897 18 6 10.5472 0.8938 -0.2355 19 1 10.2080 0.8127 0.7866 20 6 11.8179 0.4553 -0.5821 21 7 12.0740 0.0938 -1.8214 22 14 13.1642 0.3784 0.7106 23 1 14.4184 -0.1188 0.0900 24 1 12.7519 -0.5420 1.8005 25 1 13.3928 1.7355 1.2685 26 6 8.2636 1.3328 -1.0581 27 6 3.4312 1.2833 -0.0069 28 9 4.1685 0.1512 -0.0131 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 0.2118 2.3141 0.0014 33 1 1.3140 4.5113 0.0009 34 1 5.7203 2.6293 -2.0130 35 1 7.6982 4.3743 -2.5842 36 1 7.8309 2.7610 -3.3240 37 1 9.9772 4.1050 -1.6193 38 1 9.9994 3.9801 -3.3953 39 1 11.3651 2.1918 -2.2599 40 1 10.0481 1.5333 -3.2644 41 1 11.3566 0.0538 -2.4730 42 1 7.8665 0.6983 -1.8504 43 1 8.0116 0.9083 -0.0863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009298484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = -136.887529 kcal Electronic energy + Delta-G solvation = -29966.658514 eV Core-core repulsion = 25455.006662 eV Total energy + Delta-G solvation = -4511.651852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.22073 -50.16820 -41.49563 -40.86693 -39.32119 -38.15405 -36.29888 -34.38519 -32.59815 -32.33679 -31.19615 -30.17006 -28.23177 -27.15594 -25.58826 -24.13297 -23.91180 -23.45400 -21.88861 -21.20470 -19.78699 -19.46511 -19.05980 -18.90342 -18.13272 -17.72847 -17.23546 -17.00331 -16.62385 -16.33722 -16.27293 -16.19946 -15.87373 -15.73278 -15.63854 -15.49628 -15.39978 -14.98936 -14.44905 -14.18389 -14.02728 -13.70776 -13.51752 -13.41510 -13.25982 -13.06304 -12.65360 -12.55546 -12.36263 -12.06524 -11.97735 -11.91282 -11.88232 -11.79284 -11.35846 -11.28706 -10.71423 -10.36186 -10.31699 -9.37919 -9.00817 -8.32406 -5.48843 -0.54115 -0.22113 1.08915 1.53978 1.61354 1.70770 1.81804 2.00340 2.15802 2.60223 2.61463 3.08696 3.13540 3.22552 3.50323 3.57321 3.66329 3.71472 3.91108 3.97943 4.04090 4.26473 4.32749 4.35189 4.44670 4.50865 4.55122 4.61110 4.66982 4.71978 4.76617 4.82291 4.85585 4.91730 4.95821 5.08104 5.18843 5.21753 5.27826 5.43669 5.75747 6.10984 6.20204 6.33606 6.87159 6.98718 7.69651 8.10518 8.91945 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.002886 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.998696 B = 9700.839661 C =10447.119205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.330 6.330 3 C 0.094 3.906 4 C -0.115 4.115 5 C -0.095 4.095 6 C 0.112 3.888 7 F -0.132 7.132 8 C -0.175 4.175 9 C 0.560 3.440 10 O -0.567 6.567 11 N -0.693 5.693 12 C 0.140 3.860 13 H 0.060 0.940 14 C -0.104 4.104 15 C -0.124 4.124 16 C 0.149 3.851 17 N -0.614 5.614 18 C -0.364 4.364 19 H 0.035 0.965 20 C -0.067 4.067 21 N -0.934 5.934 22 Si 1.115 2.885 23 H -0.282 1.282 24 H -0.281 1.281 25 H -0.279 1.279 26 C 0.148 3.852 27 C 0.096 3.904 28 F -0.139 7.139 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.196 0.804 34 H 0.417 0.583 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.015 0.985 41 H 0.256 0.744 42 H 0.022 0.978 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.045 8.740 -2.370 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.244 6.244 3 C 0.047 3.953 4 C -0.133 4.133 5 C -0.113 4.113 6 C 0.091 3.909 7 F -0.111 7.111 8 C -0.180 4.180 9 C 0.345 3.655 10 O -0.446 6.446 11 N -0.343 5.343 12 C 0.034 3.966 13 H 0.078 0.922 14 C -0.141 4.141 15 C -0.163 4.163 16 C 0.024 3.976 17 N -0.339 5.339 18 C -0.494 4.494 19 H 0.053 0.947 20 C -0.264 4.264 21 N -0.575 5.575 22 Si 0.938 3.062 23 H -0.207 1.207 24 H -0.207 1.207 25 H -0.205 1.205 26 C 0.021 3.979 27 C 0.075 3.925 28 F -0.117 7.117 29 H 0.134 0.866 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.220 0.780 33 H 0.213 0.787 34 H 0.254 0.746 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -28.858 8.234 -1.386 30.041 hybrid contribution -1.144 -0.253 -0.300 1.210 sum -30.002 7.981 -1.686 31.091 Atomic orbital electron populations 1.23620 0.74576 1.06425 1.03732 1.86199 1.25003 1.24945 1.88237 1.18887 0.89014 0.87773 0.99673 1.21625 1.02867 0.88433 1.00415 1.21401 0.90137 1.01166 0.98591 1.17425 0.91535 0.77998 1.03911 1.91548 1.84359 1.41385 1.93783 1.19615 0.93077 0.93336 1.11938 1.18266 0.87092 0.75859 0.84255 1.90844 1.70139 1.50629 1.32999 1.45894 1.07382 1.72732 1.08320 1.21473 0.77890 0.97252 1.00016 0.92180 1.21629 0.96002 1.01656 0.94850 1.21931 0.95001 0.97111 1.02265 1.20990 0.97494 0.91558 0.87559 1.44282 1.00352 1.64630 1.24644 1.20150 0.99888 1.40031 0.89293 0.94699 1.27227 1.01536 0.95477 1.02168 1.70897 1.36181 1.45295 1.05146 0.82875 0.73632 0.77050 0.72612 1.20747 1.20690 1.20547 1.21253 0.84571 0.94611 0.97504 1.16823 0.87418 0.80600 1.07645 1.91532 1.77295 1.48937 1.93965 0.86553 0.90105 0.89720 0.78039 0.78656 0.74605 0.88860 0.90167 0.93136 0.88726 0.93273 0.96686 0.93416 0.96028 0.95931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -5.62 10.36 -93.59 -0.97 -6.59 16 3 C 0.09 1.67 6.68 22.48 0.15 1.82 16 4 C -0.12 -0.98 9.03 22.39 0.20 -0.78 16 5 C -0.09 -0.96 10.00 22.27 0.22 -0.74 16 6 C 0.11 2.30 7.28 22.67 0.17 2.46 16 7 F -0.13 -3.13 16.82 44.97 0.76 -2.38 16 8 C -0.17 -4.86 5.64 -20.03 -0.11 -4.97 16 9 C 0.56 20.54 6.50 86.70 0.56 21.10 16 10 O -0.57 -26.77 16.77 -4.02 -0.07 -26.84 16 11 N -0.69 -22.49 5.08 -444.60 -2.26 -24.75 16 12 C 0.14 5.43 2.62 45.22 0.12 5.55 16 13 H 0.06 2.73 7.58 -2.38 -0.02 2.71 16 14 C -0.10 -3.21 5.35 30.62 0.16 -3.04 16 15 C -0.12 -4.50 6.08 30.67 0.19 -4.32 16 16 C 0.15 7.21 4.68 86.36 0.40 7.61 16 17 N -0.61 -33.74 2.84 -698.25 -1.99 -35.72 16 18 C -0.36 -22.50 9.49 84.03 0.80 -21.70 16 19 H 0.04 2.26 7.94 -2.91 -0.02 2.24 16 20 C -0.07 -4.05 4.69 84.86 0.40 -3.66 16 21 N -0.93 -58.73 12.41 21.65 0.27 -58.46 16 22 Si 1.11 54.24 29.99 68.60 2.06 56.30 16 23 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 C 0.15 7.17 6.12 86.51 0.53 7.70 16 27 C 0.10 2.57 7.30 22.76 0.17 2.74 16 28 F -0.14 -4.75 16.67 44.97 0.75 -4.00 16 29 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.08 0.07 7.65 -2.39 -0.02 0.05 16 31 H 0.08 0.01 7.66 -2.39 -0.02 -0.01 16 32 H 0.20 -0.25 6.27 -2.91 -0.02 -0.26 16 33 H 0.20 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.42 10.19 8.59 -92.71 -0.80 9.40 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.05 2.68 6.31 -2.39 -0.02 2.67 16 40 H 0.02 0.73 7.86 -2.39 -0.02 0.71 16 41 H 0.26 16.30 6.69 -92.71 -0.62 15.68 16 42 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.02 1.22 7.93 -2.39 -0.02 1.21 16 Total: -1.00 -87.59 364.94 4.04 -83.55 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.42 Total: 7.95 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 5.07 Total: 10.94 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -3.97 Total: -118.93 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.04 Total: -33.43 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 1.51 Total: -6.38 kcal Atomic # 14 Polarization: 54.24 SS G_CDS: 2.06 Total: 56.30 kcal Total: -87.59 4.04 -83.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009298484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.334 kcal (2) G-P(sol) polarization free energy of solvation -87.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds