Wall clock time and date at job start Sat Apr 11 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35708 * 117.00680 * 2 1 4 4 C 1.38826 * 120.14538 * 270.25788 * 3 2 1 5 5 F 1.35100 * 119.94171 * 359.97438 * 4 3 2 6 6 C 1.38271 * 120.11649 * 180.23074 * 4 3 2 7 7 C 1.38451 * 120.40529 * 359.78311 * 6 4 3 8 8 C 1.38081 * 120.29342 * 359.95376 * 7 6 4 9 9 F 1.35096 * 120.06237 * 180.02562 * 8 7 6 10 10 C 1.39993 * 119.87803 * 0.02562 * 8 7 6 11 11 C 1.47394 * 120.20427 * 179.97438 * 10 8 7 12 12 O 1.21606 * 119.99924 * 89.99756 * 11 10 8 13 13 N 1.34775 * 119.99839 * 270.00277 * 11 10 8 14 14 C 1.46498 * 119.99766 * 179.97438 * 13 11 10 15 15 C 1.53012 * 109.46877 * 174.80455 * 14 13 11 16 16 H 1.09000 * 109.87083 * 56.99993 * 15 14 13 17 17 C 1.54325 * 109.87935 * 295.98079 * 15 14 13 18 18 C 1.55161 * 102.93992 * 218.38754 * 17 15 14 19 19 C 1.54913 * 101.57910 * 35.50724 * 18 17 15 20 20 N 1.47024 * 109.88074 * 178.17677 * 15 14 13 21 21 C 1.36940 * 125.64533 * 298.33528 * 20 15 14 22 22 H 1.07996 * 119.99996 * 345.38809 * 21 20 15 23 23 C 1.38810 * 119.99617 * 165.39115 * 21 20 15 24 24 N 1.31622 * 120.00277 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99658 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46983 * 90.00282 * 25 23 21 27 27 H 1.48500 * 109.47049 * 209.99728 * 25 23 21 28 28 H 1.48492 * 109.47479 * 330.00113 * 25 23 21 29 29 H 1.08998 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47581 * 300.00477 * 1 2 3 31 31 H 1.09009 * 109.46921 * 60.00236 * 1 2 3 32 32 H 1.07991 * 119.79312 * 179.75887 * 6 4 3 33 33 H 1.08004 * 119.85083 * 179.97438 * 7 6 4 34 34 H 0.97005 * 119.99877 * 359.97438 * 13 11 10 35 35 H 1.08998 * 109.47112 * 54.80573 * 14 13 11 36 36 H 1.09000 * 109.47365 * 294.79849 * 14 13 11 37 37 H 1.08992 * 110.72330 * 336.75573 * 17 15 14 38 38 H 1.09004 * 110.71661 * 100.03101 * 17 15 14 39 39 H 1.08997 * 110.99878 * 153.57466 * 18 17 15 40 40 H 1.08995 * 111.00779 * 277.43160 * 18 17 15 41 41 H 1.09005 * 110.36569 * 81.82510 * 19 18 17 42 42 H 1.08996 * 110.36410 * 204.03723 * 19 18 17 43 43 H 0.97002 * 119.99826 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 2.3569 1.8327 -1.2005 5 9 2.0468 1.2346 -2.3715 6 6 2.9891 3.0624 -1.1998 7 6 3.3121 3.6836 -0.0054 8 6 3.0050 3.0810 1.1984 9 9 3.3218 3.6916 2.3612 10 6 2.3646 1.8362 1.2118 11 6 2.0339 1.1862 2.4927 12 8 0.9610 1.3999 3.0238 13 7 2.9206 0.3552 3.0753 14 6 2.5921 -0.2904 4.3487 15 6 3.7031 -1.2735 4.7236 16 1 4.6590 -0.7518 4.7712 17 6 3.7752 -2.4072 3.6790 18 6 4.0726 -3.6596 4.5454 19 6 3.2623 -3.3494 5.8288 20 7 3.4038 -1.8948 6.0221 21 6 3.2778 -1.2320 7.2138 22 1 3.6260 -0.2138 7.3048 23 6 2.7026 -1.8690 8.3047 24 7 2.2778 -3.1098 8.1936 25 14 2.5314 -0.9651 9.9305 26 1 1.2255 -0.2591 9.9692 27 1 2.6001 -1.9401 11.0485 28 1 3.6321 0.0222 10.0664 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.2327 3.5410 -2.1367 33 1 3.8062 4.6439 -0.0153 34 1 3.7763 0.1845 2.6515 35 1 1.6490 -0.8280 4.2508 36 1 2.4996 0.4671 5.1270 37 1 2.8228 -2.5146 3.1600 38 1 4.5837 -2.2277 2.9704 39 1 3.7065 -4.5651 4.0617 40 1 5.1372 -3.7389 4.7652 41 1 2.2140 -3.6132 5.6886 42 1 3.6781 -3.8890 6.6796 43 1 1.8755 -3.5548 8.9559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028071554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:11 Heat of formation + Delta-G solvation = -106.171787 kcal Electronic energy + Delta-G solvation = -30049.744023 eV Core-core repulsion = 25539.424106 eV Total energy + Delta-G solvation = -4510.319917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.31964 -49.30776 -40.56008 -38.92849 -37.67610 -37.49581 -34.32210 -32.50364 -31.66267 -30.30629 -29.62951 -28.62053 -27.30152 -25.29108 -24.51214 -23.38550 -22.98432 -20.83376 -20.16624 -19.63929 -18.76159 -18.18671 -18.08460 -16.98957 -16.70444 -16.53305 -16.21940 -15.92911 -15.68876 -15.30362 -15.03683 -14.89352 -14.78910 -14.56855 -14.33702 -13.86540 -13.60670 -13.43518 -13.10747 -12.85979 -12.55244 -12.24414 -12.07993 -11.89395 -11.79418 -11.73467 -11.32249 -10.94741 -10.80065 -10.52062 -10.26492 -10.16004 -10.05558 -9.86671 -9.80646 -9.69216 -9.50390 -9.00505 -8.75859 -8.59408 -6.85112 -5.77695 -3.14405 0.25113 0.36668 2.50133 2.57323 3.05569 3.27611 3.40403 3.45976 3.46745 3.70821 3.79588 4.16400 4.42230 4.46254 4.52312 4.82192 5.00213 5.13716 5.26190 5.32703 5.34815 5.39081 5.40442 5.46141 5.50847 5.51536 5.61922 5.81305 6.03170 6.04331 6.11766 6.25872 6.45580 6.51650 6.56163 6.68014 6.77746 6.91654 7.03317 7.50925 7.59458 7.62843 7.78630 8.22621 8.27276 9.16514 9.76941 10.44217 11.34245 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.003049 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.176358 B = 9180.313413 C = 9996.660821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.321 6.321 3 C 0.127 3.873 4 C 0.070 3.930 5 F -0.124 7.124 6 C -0.100 4.100 7 C -0.132 4.132 8 C 0.139 3.861 9 F -0.118 7.118 10 C -0.151 4.151 11 C 0.564 3.436 12 O -0.526 6.526 13 N -0.703 5.703 14 C 0.108 3.892 15 C 0.152 3.848 16 H 0.038 0.962 17 C -0.126 4.126 18 C -0.148 4.148 19 C 0.172 3.828 20 N -0.588 5.588 21 C -0.235 4.235 22 H 0.076 0.924 23 C 0.000 4.000 24 N -0.915 5.915 25 Si 0.911 3.089 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.280 1.280 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.399 0.601 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 9.778 -21.765 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.237 6.237 3 C 0.081 3.919 4 C 0.050 3.950 5 F -0.103 7.103 6 C -0.119 4.119 7 C -0.151 4.151 8 C 0.118 3.882 9 F -0.097 7.097 10 C -0.156 4.156 11 C 0.347 3.653 12 O -0.403 6.403 13 N -0.352 5.352 14 C -0.016 4.016 15 C 0.043 3.957 16 H 0.056 0.944 17 C -0.164 4.164 18 C -0.187 4.187 19 C 0.048 3.952 20 N -0.312 5.312 21 C -0.363 4.363 22 H 0.094 0.906 23 C -0.198 4.198 24 N -0.561 5.561 25 Si 0.741 3.259 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.205 1.205 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.232 0.768 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.655 9.636 -21.073 23.230 hybrid contribution 0.013 0.578 0.621 0.848 sum 1.667 10.214 -20.452 22.921 Atomic orbital electron populations 1.23219 0.76834 1.04472 1.01611 1.86015 1.21285 1.22480 1.93967 1.18315 0.97493 0.86831 0.89274 1.17873 1.03205 0.92969 0.80936 1.91539 1.91016 1.83116 1.44585 1.21019 0.97890 0.93196 0.99758 1.20975 1.02533 1.01962 0.89594 1.17441 0.97780 0.90535 0.82414 1.91604 1.90122 1.81822 1.46113 1.20382 1.04496 0.95503 0.95220 1.17595 0.84921 0.79603 0.83219 1.90847 1.23171 1.62250 1.64006 1.46096 1.19174 1.45335 1.24627 1.22370 1.00739 0.96298 0.82208 1.21138 0.94626 0.92247 0.87646 0.94409 1.22607 1.00694 0.96249 0.96877 1.23006 1.00587 0.96265 0.98839 1.21453 0.96166 0.84406 0.93194 1.44490 1.83183 1.02468 1.01068 1.18993 1.33437 0.97411 0.86508 0.90627 1.24916 0.99344 0.96741 0.98779 1.69941 1.44926 1.11013 1.30188 0.86148 0.78074 0.78628 0.83090 1.21377 1.21634 1.20546 0.87806 0.91938 0.93124 0.82692 0.82623 0.76770 0.91240 0.91218 0.91708 0.92370 0.92313 0.92297 0.95599 0.90936 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.13 101.05 1.12 1.47 16 2 O -0.32 -4.19 9.73 -18.83 -0.18 -4.37 16 3 C 0.13 1.54 5.74 -38.65 -0.22 1.31 16 4 C 0.07 0.69 7.30 -39.35 -0.29 0.40 16 5 F -0.12 -1.27 17.11 2.25 0.04 -1.23 16 6 C -0.10 -0.69 10.00 -39.49 -0.40 -1.09 16 7 C -0.13 -0.98 10.00 -39.56 -0.40 -1.38 16 8 C 0.14 1.55 7.28 -38.98 -0.28 1.27 16 9 F -0.12 -1.53 16.83 2.25 0.04 -1.49 16 10 C -0.15 -1.99 5.64 -104.80 -0.59 -2.58 16 11 C 0.56 9.40 6.43 -12.53 -0.08 9.32 16 12 O -0.53 -10.74 16.86 5.27 0.09 -10.65 16 13 N -0.70 -11.21 5.32 -61.39 -0.33 -11.54 16 14 C 0.11 2.12 5.07 -4.04 -0.02 2.10 16 15 C 0.15 3.02 3.23 -66.94 -0.22 2.80 16 16 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.13 -2.14 6.07 -24.89 -0.15 -2.29 16 18 C -0.15 -2.73 7.09 -24.58 -0.17 -2.90 16 19 C 0.17 4.11 5.41 -2.53 -0.01 4.10 16 20 N -0.59 -14.60 3.13 -162.57 -0.51 -15.11 16 21 C -0.24 -6.44 9.77 -15.06 -0.15 -6.59 16 22 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 23 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 24 N -0.91 -26.58 10.58 55.49 0.59 -26.00 16 25 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16 31 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.16 0.59 8.06 -52.49 -0.42 0.16 16 33 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.40 5.29 8.30 -40.82 -0.34 4.95 16 35 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 36 H 0.07 1.53 7.94 -51.93 -0.41 1.12 16 37 H 0.06 1.10 7.82 -51.93 -0.41 0.70 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 42 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -32.68 372.19 -7.32 -40.00 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.69 Total: 1.84 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -1.95 Total: 5.84 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.25 Total: -52.65 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.09 Total: -15.02 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.68 -7.32 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028071554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.173 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds