Wall clock time and date at job start Sat Apr 11 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35708 * 117.00680 * 2 1 4 4 C 1.38826 * 120.14538 * 270.25788 * 3 2 1 5 5 F 1.35100 * 119.94171 * 359.97438 * 4 3 2 6 6 C 1.38271 * 120.11649 * 180.23074 * 4 3 2 7 7 C 1.38451 * 120.40529 * 359.78311 * 6 4 3 8 8 C 1.38081 * 120.29342 * 359.95376 * 7 6 4 9 9 F 1.35096 * 120.06237 * 180.02562 * 8 7 6 10 10 C 1.39993 * 119.87803 * 0.02562 * 8 7 6 11 11 C 1.47394 * 120.20427 * 179.97438 * 10 8 7 12 12 O 1.21606 * 119.99924 * 89.99756 * 11 10 8 13 13 N 1.34775 * 119.99839 * 270.00277 * 11 10 8 14 14 C 1.46498 * 119.99766 * 179.97438 * 13 11 10 15 15 C 1.53012 * 109.46877 * 174.80455 * 14 13 11 16 16 H 1.09000 * 109.87083 * 56.99993 * 15 14 13 17 17 C 1.54325 * 109.87935 * 295.98079 * 15 14 13 18 18 C 1.55161 * 102.93992 * 218.38754 * 17 15 14 19 19 C 1.54913 * 101.57910 * 35.50724 * 18 17 15 20 20 N 1.47024 * 109.88074 * 178.17677 * 15 14 13 21 21 C 1.36940 * 125.64533 * 298.33528 * 20 15 14 22 22 H 1.07996 * 119.99996 * 345.38809 * 21 20 15 23 23 C 1.38810 * 119.99617 * 165.39115 * 21 20 15 24 24 N 1.31622 * 120.00277 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99658 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46983 * 90.00282 * 25 23 21 27 27 H 1.48500 * 109.47049 * 209.99728 * 25 23 21 28 28 H 1.48492 * 109.47479 * 330.00113 * 25 23 21 29 29 H 1.08998 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47581 * 300.00477 * 1 2 3 31 31 H 1.09009 * 109.46921 * 60.00236 * 1 2 3 32 32 H 1.07991 * 119.79312 * 179.75887 * 6 4 3 33 33 H 1.08004 * 119.85083 * 179.97438 * 7 6 4 34 34 H 0.97005 * 119.99877 * 359.97438 * 13 11 10 35 35 H 1.08998 * 109.47112 * 54.80573 * 14 13 11 36 36 H 1.09000 * 109.47365 * 294.79849 * 14 13 11 37 37 H 1.08992 * 110.72330 * 336.75573 * 17 15 14 38 38 H 1.09004 * 110.71661 * 100.03101 * 17 15 14 39 39 H 1.08997 * 110.99878 * 153.57466 * 18 17 15 40 40 H 1.08995 * 111.00779 * 277.43160 * 18 17 15 41 41 H 1.09005 * 110.36569 * 81.82510 * 19 18 17 42 42 H 1.08996 * 110.36410 * 204.03723 * 19 18 17 43 43 H 0.97002 * 119.99826 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 2.3569 1.8327 -1.2005 5 9 2.0468 1.2346 -2.3715 6 6 2.9891 3.0624 -1.1998 7 6 3.3121 3.6836 -0.0054 8 6 3.0050 3.0810 1.1984 9 9 3.3218 3.6916 2.3612 10 6 2.3646 1.8362 1.2118 11 6 2.0339 1.1862 2.4927 12 8 0.9610 1.3999 3.0238 13 7 2.9206 0.3552 3.0753 14 6 2.5921 -0.2904 4.3487 15 6 3.7031 -1.2735 4.7236 16 1 4.6590 -0.7518 4.7712 17 6 3.7752 -2.4072 3.6790 18 6 4.0726 -3.6596 4.5454 19 6 3.2623 -3.3494 5.8288 20 7 3.4038 -1.8948 6.0221 21 6 3.2778 -1.2320 7.2138 22 1 3.6260 -0.2138 7.3048 23 6 2.7026 -1.8690 8.3047 24 7 2.2778 -3.1098 8.1936 25 14 2.5314 -0.9651 9.9305 26 1 1.2255 -0.2591 9.9692 27 1 2.6001 -1.9401 11.0485 28 1 3.6321 0.0222 10.0664 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.2327 3.5410 -2.1367 33 1 3.8062 4.6439 -0.0153 34 1 3.7763 0.1845 2.6515 35 1 1.6490 -0.8280 4.2508 36 1 2.4996 0.4671 5.1270 37 1 2.8228 -2.5146 3.1600 38 1 4.5837 -2.2277 2.9704 39 1 3.7065 -4.5651 4.0617 40 1 5.1372 -3.7389 4.7652 41 1 2.2140 -3.6132 5.6886 42 1 3.6781 -3.8890 6.6796 43 1 1.8755 -3.5548 8.9559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028071554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:10 Heat of formation + Delta-G solvation = -128.007772 kcal Electronic energy + Delta-G solvation = -30050.690903 eV Core-core repulsion = 25539.424106 eV Total energy + Delta-G solvation = -4511.266797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.21449 -50.06713 -41.61602 -40.18328 -39.22171 -38.39743 -35.89391 -34.44544 -32.62557 -31.41994 -31.07591 -30.24935 -28.16517 -26.86498 -26.14458 -24.69542 -23.77972 -22.21033 -21.78053 -21.25466 -19.77760 -19.24283 -18.94165 -18.58882 -17.85974 -17.60483 -17.28344 -17.10436 -16.74626 -16.59241 -16.26964 -16.14058 -15.88759 -15.74802 -15.66155 -15.47980 -14.88280 -14.65515 -14.20379 -14.00512 -13.80842 -13.68905 -13.46413 -13.36578 -13.03798 -12.97491 -12.86714 -12.71635 -12.61690 -12.02631 -11.91885 -11.77964 -11.52359 -11.50225 -11.43850 -11.21712 -10.70794 -10.32385 -10.26066 -9.77994 -8.89108 -7.90681 -5.28745 -0.52840 -0.38926 1.22500 1.42875 1.45533 1.53190 1.78487 1.96511 2.36370 2.47232 2.92910 2.95749 3.28565 3.33837 3.60383 3.72516 3.74355 3.90126 3.93383 4.01931 4.21423 4.22732 4.27910 4.39422 4.48230 4.54312 4.58414 4.64426 4.67920 4.75329 4.85889 4.89597 4.95896 5.09393 5.13534 5.24713 5.35514 5.43956 5.50398 5.64125 5.75795 6.06164 6.20021 6.30499 6.95601 7.06781 7.73065 8.39200 9.20224 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.003049 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.176358 B = 9180.313413 C = 9996.660821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.340 6.340 3 C 0.112 3.888 4 C 0.069 3.931 5 F -0.126 7.126 6 C -0.071 4.071 7 C -0.107 4.107 8 C 0.124 3.876 9 F -0.134 7.134 10 C -0.174 4.174 11 C 0.564 3.436 12 O -0.574 6.574 13 N -0.691 5.691 14 C 0.130 3.870 15 C 0.149 3.851 16 H 0.052 0.948 17 C -0.113 4.113 18 C -0.132 4.132 19 C 0.174 3.826 20 N -0.610 5.610 21 C -0.243 4.243 22 H 0.076 0.924 23 C -0.058 4.058 24 N -0.944 5.944 25 Si 0.972 3.028 26 H -0.291 1.291 27 H -0.290 1.290 28 H -0.267 1.267 29 H 0.117 0.883 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.201 0.799 33 H 0.196 0.804 34 H 0.415 0.585 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.072 0.928 41 H -0.008 1.008 42 H 0.038 0.962 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 11.680 -25.162 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.257 6.257 3 C 0.066 3.934 4 C 0.049 3.951 5 F -0.104 7.104 6 C -0.089 4.089 7 C -0.126 4.126 8 C 0.104 3.896 9 F -0.112 7.112 10 C -0.178 4.178 11 C 0.350 3.650 12 O -0.454 6.454 13 N -0.341 5.341 14 C 0.004 3.996 15 C 0.042 3.958 16 H 0.070 0.930 17 C -0.151 4.151 18 C -0.171 4.171 19 C 0.049 3.951 20 N -0.334 5.334 21 C -0.372 4.372 22 H 0.094 0.906 23 C -0.252 4.252 24 N -0.592 5.592 25 Si 0.800 3.200 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.192 1.192 29 H 0.135 0.865 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.218 0.782 33 H 0.213 0.787 34 H 0.252 0.748 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.010 0.990 42 H 0.056 0.944 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.760 11.556 -24.524 27.369 hybrid contribution -0.623 0.059 1.562 1.683 sum 3.137 11.615 -22.962 25.923 Atomic orbital electron populations 1.23288 0.76320 1.05310 1.01291 1.85974 1.22012 1.23580 1.94104 1.18457 0.98193 0.86949 0.89836 1.17990 1.03440 0.93738 0.79918 1.91541 1.91108 1.83386 1.44399 1.21513 0.94742 0.91334 1.01309 1.21393 1.00648 1.02728 0.87793 1.17772 0.98476 0.90070 0.83268 1.91567 1.90370 1.81952 1.47348 1.20065 1.07517 0.96848 0.93402 1.18165 0.83921 0.78792 0.84166 1.90811 1.25148 1.63691 1.65704 1.45842 1.19971 1.44995 1.23338 1.21805 0.99465 0.95217 0.83150 1.21323 0.94587 0.93350 0.86567 0.92985 1.22583 1.02316 0.93835 0.96330 1.22873 1.00315 0.97936 0.95941 1.21267 0.94988 0.83923 0.94875 1.44747 1.83074 1.03309 1.02282 1.19305 1.32594 0.97455 0.87841 0.90582 1.25688 0.99871 0.97569 1.02034 1.70140 1.46152 1.12286 1.30622 0.85184 0.77936 0.77597 0.79280 1.21783 1.21658 1.19172 0.86510 0.94469 0.91134 0.78238 0.78677 0.74824 0.94177 0.94365 0.91875 0.87992 0.89871 0.90958 0.99028 0.94360 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.13 113.37 1.26 1.94 16 2 O -0.34 -8.72 9.73 -90.29 -0.88 -9.59 16 3 C 0.11 2.55 5.74 22.87 0.13 2.68 16 4 C 0.07 1.13 7.30 22.42 0.16 1.29 16 5 F -0.13 -2.18 17.11 44.97 0.77 -1.41 16 6 C -0.07 -0.61 10.00 22.33 0.22 -0.39 16 7 C -0.11 -1.10 10.00 22.28 0.22 -0.88 16 8 C 0.12 2.53 7.28 22.66 0.17 2.70 16 9 F -0.13 -3.32 16.83 44.97 0.76 -2.56 16 10 C -0.17 -4.46 5.64 -19.98 -0.11 -4.57 16 11 C 0.56 19.38 6.43 86.65 0.56 19.93 16 12 O -0.57 -24.84 16.86 -4.05 -0.07 -24.90 16 13 N -0.69 -22.30 5.32 -466.39 -2.48 -24.78 16 14 C 0.13 5.28 5.07 86.38 0.44 5.72 16 15 C 0.15 5.91 3.23 45.35 0.15 6.06 16 16 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 17 C -0.11 -3.60 6.07 31.78 0.19 -3.41 16 18 C -0.13 -4.67 7.09 31.99 0.23 -4.45 16 19 C 0.17 8.60 5.41 86.86 0.47 9.07 16 20 N -0.61 -31.17 3.13 -668.24 -2.09 -33.26 16 21 C -0.24 -13.74 9.77 84.03 0.82 -12.92 16 22 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 23 C -0.06 -3.34 5.47 84.86 0.46 -2.87 16 24 N -0.94 -57.45 10.58 21.65 0.23 -57.22 16 25 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 29 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 0.99 7.90 -2.39 -0.02 0.97 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.20 0.06 8.06 -2.91 -0.02 0.03 16 33 H 0.20 0.53 8.06 -2.91 -0.02 0.51 16 34 H 0.41 10.54 8.30 -92.70 -0.77 9.77 16 35 H 0.04 1.86 8.09 -2.39 -0.02 1.84 16 36 H 0.04 1.78 7.94 -2.39 -0.02 1.76 16 37 H 0.06 2.06 7.82 -2.39 -0.02 2.04 16 38 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H -0.01 -0.46 8.06 -2.38 -0.02 -0.48 16 42 H 0.04 2.12 6.93 -2.39 -0.02 2.10 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -77.67 372.19 3.92 -73.75 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.28 Total: 11.19 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 5.37 Total: 19.91 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -4.34 Total: -115.26 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.95 Total: -34.50 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 1.53 Total: -3.98 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -77.67 3.92 -73.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028071554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.262 kcal (2) G-P(sol) polarization free energy of solvation -77.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds