Wall clock time and date at job start Sat Apr 11 2020 06:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35711 * 116.99807 * 2 1 4 4 C 1.38932 * 119.86189 * 179.97438 * 3 2 1 5 5 C 1.37971 * 120.13597 * 180.02562 * 4 3 2 6 6 F 1.35092 * 120.06970 * 180.02562 * 5 4 3 7 7 C 1.40060 * 119.85991 * 0.02562 * 5 4 3 8 8 C 1.47304 * 120.13001 * 179.97438 * 7 5 4 9 9 O 1.21622 * 120.00153 * 90.00380 * 8 7 5 10 10 N 1.34777 * 119.99661 * 269.99792 * 8 7 5 11 11 C 1.46505 * 119.99816 * 180.27396 * 10 8 7 12 12 C 1.52998 * 109.47101 * 173.14837 * 11 10 8 13 13 H 1.08997 * 109.86881 * 56.71055 * 12 11 10 14 14 C 1.54322 * 109.87986 * 177.72035 * 12 11 10 15 15 C 1.55161 * 102.94208 * 141.61444 * 14 12 11 16 16 C 1.54909 * 101.57859 * 324.49784 * 15 14 12 17 17 N 1.47019 * 109.88706 * 295.69251 * 12 11 10 18 18 C 1.36938 * 125.64661 * 61.60045 * 17 12 11 19 19 H 1.07991 * 120.00559 * 325.68063 * 18 17 12 20 20 C 1.38811 * 119.99453 * 145.67776 * 18 17 12 21 21 N 1.31627 * 120.00098 * 162.23198 * 20 18 17 22 22 Si 1.86805 * 120.00143 * 342.23247 * 20 18 17 23 23 H 1.48499 * 109.47099 * 92.61227 * 22 20 18 24 24 H 1.48502 * 109.47052 * 212.61054 * 22 20 18 25 25 H 1.48493 * 109.47065 * 332.60758 * 22 20 18 26 26 C 1.40062 * 119.73752 * 0.25866 * 7 5 4 27 27 F 1.35092 * 120.06968 * 179.72336 * 26 7 5 28 28 C 1.37970 * 119.85945 * 359.46669 * 26 7 5 29 29 H 1.09002 * 109.46824 * 59.99982 * 1 2 3 30 30 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47353 * 300.00016 * 1 2 3 32 32 H 1.08001 * 119.93914 * 0.02780 * 4 3 2 33 33 H 0.96993 * 120.00183 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.47538 * 293.15846 * 11 10 8 35 35 H 1.09008 * 109.46853 * 53.15425 * 11 10 8 36 36 H 1.09003 * 110.72367 * 259.97383 * 14 12 11 37 37 H 1.09007 * 110.72386 * 23.07544 * 14 12 11 38 38 H 1.08997 * 111.00438 * 82.57268 * 15 14 12 39 39 H 1.08998 * 111.00441 * 206.42405 * 15 14 12 40 40 H 1.09002 * 110.36757 * 155.84439 * 16 15 14 41 41 H 1.09003 * 110.37073 * 278.06029 * 16 15 14 42 42 H 0.96991 * 120.00165 * 179.97438 * 21 20 18 43 43 H 1.08002 * 119.93014 * 180.27679 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4327 1.2786 0.0005 5 6 4.0649 2.5050 0.0011 6 9 5.4142 2.5709 0.0011 7 6 3.3048 3.6814 0.0016 8 6 3.9736 4.9938 0.0028 9 8 4.2500 5.5364 -1.0500 10 7 4.2791 5.5934 1.1705 11 6 4.9388 6.9015 1.1717 12 6 5.0173 7.4318 2.6047 13 1 5.5376 6.7130 3.2377 14 6 5.7618 8.7835 2.6240 15 6 4.9725 9.5998 3.6815 16 6 3.5247 9.1055 3.4386 17 7 3.6629 7.6683 3.1254 18 6 2.6934 6.7152 3.2896 19 1 2.6221 5.8920 2.5943 20 6 1.8023 6.8074 4.3499 21 7 0.6779 6.1234 4.3261 22 14 2.1988 7.9020 5.8108 23 1 1.6096 9.2480 5.5951 24 1 1.6299 7.3048 7.0457 25 1 3.6719 8.0234 5.9530 26 6 1.9063 3.6049 0.0071 27 9 1.1666 4.7353 0.0133 28 6 1.2857 2.3727 0.0008 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0178 0.3708 0.0005 33 1 4.0589 5.1606 2.0101 34 1 5.9454 6.8012 0.7657 35 1 4.3670 7.5974 0.5576 36 1 6.7977 8.6488 2.9353 37 1 5.7136 9.2644 1.6470 38 1 5.3045 9.3561 4.6906 39 1 5.0571 10.6698 3.4918 40 1 2.9221 9.2402 4.3369 41 1 3.0776 9.6383 2.5994 42 1 0.0555 6.1875 5.0671 43 1 0.2074 2.3124 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028152395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:21 Heat of formation + Delta-G solvation = -120.776682 kcal Electronic energy + Delta-G solvation = -30509.571520 eV Core-core repulsion = 25998.618287 eV Total energy + Delta-G solvation = -4510.953233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.30069 -50.26610 -41.40194 -40.74850 -39.46609 -37.99965 -35.62834 -34.62731 -32.24623 -31.78008 -31.77046 -30.58578 -28.42128 -26.70346 -25.79019 -24.42221 -23.94969 -22.50058 -21.65036 -21.19244 -20.01492 -19.41723 -18.91561 -18.22170 -17.93742 -17.60494 -17.50084 -17.14593 -16.99007 -16.55995 -16.49518 -16.45598 -16.13366 -15.82502 -15.60252 -15.31254 -15.11368 -14.85340 -14.21619 -13.92319 -13.82655 -13.75118 -13.64204 -13.30392 -13.27374 -13.05729 -12.97063 -12.65855 -12.42574 -12.28887 -12.20030 -11.90886 -11.74640 -11.53215 -11.36757 -11.19018 -10.66231 -10.10338 -10.07963 -9.64271 -8.78886 -8.15231 -5.54803 -0.37690 -0.27298 1.29308 1.30776 1.39957 1.51214 1.85689 1.99214 2.21940 2.44116 2.66181 3.04860 3.10381 3.33810 3.48122 3.62055 3.63706 3.89068 3.90671 3.96616 4.10823 4.28877 4.30838 4.39962 4.44283 4.51032 4.53980 4.63012 4.67354 4.71644 4.80220 4.82594 4.83191 4.97249 4.99592 5.12426 5.25798 5.28977 5.39752 5.46855 5.87309 6.04598 6.20073 6.37868 6.81139 7.00439 7.55583 8.21192 9.02382 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.004088 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.980493 B = 6848.402372 C = 8252.935673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.301 6.301 3 C 0.213 3.787 4 C -0.188 4.188 5 C 0.196 3.804 6 F -0.120 7.120 7 C -0.259 4.259 8 C 0.563 3.437 9 O -0.576 6.576 10 N -0.693 5.693 11 C 0.116 3.884 12 C 0.139 3.861 13 H 0.053 0.947 14 C -0.109 4.109 15 C -0.124 4.124 16 C 0.102 3.898 17 N -0.619 5.619 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.025 4.025 21 N -0.946 5.946 22 Si 0.950 3.050 23 H -0.287 1.287 24 H -0.314 1.314 25 H -0.255 1.255 26 C 0.189 3.811 27 F -0.133 7.133 28 C -0.248 4.248 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.066 0.934 32 H 0.187 0.813 33 H 0.411 0.589 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.024 0.976 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.346 -9.448 -6.221 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.213 6.213 3 C 0.165 3.835 4 C -0.207 4.207 5 C 0.176 3.824 6 F -0.098 7.098 7 C -0.264 4.264 8 C 0.348 3.652 9 O -0.457 6.457 10 N -0.343 5.343 11 C -0.009 4.009 12 C 0.033 3.967 13 H 0.071 0.929 14 C -0.147 4.147 15 C -0.162 4.162 16 C -0.022 4.022 17 N -0.345 5.345 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.221 4.221 21 N -0.591 5.591 22 Si 0.781 3.219 23 H -0.215 1.215 24 H -0.244 1.244 25 H -0.179 1.179 26 C 0.169 3.831 27 F -0.111 7.111 28 C -0.267 4.267 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.084 0.916 32 H 0.204 0.796 33 H 0.249 0.751 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.069 0.931 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.460 -9.301 -6.833 12.767 hybrid contribution -0.936 0.873 1.150 1.721 sum 4.524 -8.428 -5.683 11.126 Atomic orbital electron populations 1.23618 0.75211 1.06790 1.02980 1.86084 1.24323 1.24201 1.86703 1.18329 0.91036 0.84326 0.89824 1.20349 0.92683 0.97388 1.10281 1.16748 0.76746 0.91614 0.97285 1.91552 1.28057 1.97087 1.93146 1.19785 0.93508 0.94448 1.18633 1.17994 0.78291 0.84765 0.84159 1.90721 1.55945 1.66621 1.32424 1.46301 1.58707 1.21081 1.08184 1.22058 0.96450 0.82914 0.99433 1.21505 0.86201 0.97763 0.91215 0.92928 1.22518 0.99427 0.92859 0.99937 1.22740 0.93269 1.00768 0.99421 1.22150 0.97354 0.85554 0.97092 1.44942 1.10065 1.02987 1.76545 1.18686 1.06703 1.04979 1.06300 0.91295 1.25979 0.96544 0.99601 0.99972 1.69938 1.09695 1.46660 1.32817 0.85751 0.79150 0.77536 0.79465 1.21546 1.24368 1.17902 1.17205 0.86593 0.82922 0.96385 1.91587 1.76375 1.50231 1.92944 1.21333 1.03189 0.89425 1.12790 0.90819 0.84737 0.91567 0.79615 0.75114 0.90198 0.93600 0.87846 0.89887 0.91438 0.88184 0.95855 0.95448 0.93063 0.80739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.80 113.37 1.11 1.20 16 2 O -0.30 -5.48 10.48 -90.32 -0.95 -6.42 16 3 C 0.21 4.87 6.69 22.60 0.15 5.02 16 4 C -0.19 -4.36 9.94 22.37 0.22 -4.14 16 5 C 0.20 5.89 7.28 22.65 0.16 6.06 16 6 F -0.12 -3.63 16.83 44.97 0.76 -2.88 16 7 C -0.26 -9.48 5.64 -20.01 -0.11 -9.59 16 8 C 0.56 23.81 6.52 86.63 0.56 24.38 16 9 O -0.58 -27.34 17.09 -4.10 -0.07 -27.41 16 10 N -0.69 -28.22 4.35 -466.47 -2.03 -30.25 16 11 C 0.12 4.33 5.16 86.38 0.45 4.77 16 12 C 0.14 5.01 3.29 45.34 0.15 5.16 16 13 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 14 C -0.11 -2.93 6.48 31.78 0.21 -2.73 16 15 C -0.12 -3.65 7.09 31.99 0.23 -3.43 16 16 C 0.10 4.18 6.26 86.79 0.54 4.72 16 17 N -0.62 -28.08 2.71 -667.46 -1.81 -29.88 16 18 C -0.24 -12.85 9.56 84.03 0.80 -12.05 16 19 H 0.07 3.96 5.48 -2.92 -0.02 3.94 16 20 C -0.02 -1.40 5.45 84.86 0.46 -0.94 16 21 N -0.95 -57.65 13.97 21.65 0.30 -57.35 16 22 Si 0.95 46.13 24.81 68.60 1.70 47.83 16 23 H -0.29 -13.76 6.76 99.48 0.67 -13.08 16 24 H -0.31 -15.58 7.11 99.48 0.71 -14.88 16 25 H -0.25 -11.55 7.07 99.48 0.70 -10.85 16 26 C 0.19 6.78 7.28 22.65 0.16 6.95 16 27 F -0.13 -5.71 16.83 44.97 0.76 -4.95 16 28 C -0.25 -6.62 8.99 22.37 0.20 -6.42 16 29 H 0.07 0.71 7.65 -2.39 -0.02 0.70 16 30 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 32 H 0.19 3.10 8.06 -2.91 -0.02 3.07 16 33 H 0.41 17.24 6.31 -92.71 -0.58 16.65 16 34 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.05 1.91 8.11 -2.38 -0.02 1.89 16 36 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 2.05 7.85 -2.38 -0.02 2.03 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.02 1.05 3.04 -2.39 -0.01 1.04 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.26 15.20 8.31 -92.72 -0.77 14.43 16 43 H 0.18 3.74 6.27 -2.91 -0.02 3.72 16 Total: -1.00 -74.59 359.15 4.42 -70.16 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.45 Total: 22.18 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 5.30 Total: 18.97 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -3.53 Total: -117.48 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.02 Total: -33.84 kcal Atomic # 9 Polarization: -9.34 SS G_CDS: 1.51 Total: -7.83 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.70 Total: 47.83 kcal Total: -74.59 4.42 -70.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028152395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.614 kcal (2) G-P(sol) polarization free energy of solvation -74.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds