Wall clock time and date at job start Sat Apr 11 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36012 * 116.99553 * 2 1 4 4 C 1.38706 * 119.96125 * 0.02562 * 3 2 1 5 5 C 1.38284 * 120.33433 * 180.02562 * 4 3 2 6 6 C 1.38201 * 120.23885 * 359.97438 * 5 4 3 7 7 F 1.35100 * 120.04589 * 179.97438 * 6 5 4 8 8 C 1.39904 * 119.90332 * 0.25161 * 6 5 4 9 9 C 1.47564 * 120.15617 * 179.74822 * 8 6 5 10 10 O 1.21592 * 119.99931 * 90.00313 * 9 8 6 11 11 N 1.34770 * 120.00048 * 269.99662 * 9 8 6 12 12 C 1.46494 * 120.00111 * 180.02562 * 11 9 8 13 13 C 1.53008 * 109.47494 * 174.97241 * 12 11 9 14 14 H 1.08997 * 109.87279 * 55.56541 * 13 12 11 15 15 C 1.54318 * 109.87929 * 294.55271 * 13 12 11 16 16 C 1.55158 * 102.94101 * 218.38575 * 15 13 12 17 17 C 1.54912 * 101.58000 * 35.50510 * 16 15 13 18 18 N 1.47019 * 109.88315 * 176.74355 * 13 12 11 19 19 C 1.36938 * 125.64790 * 298.33598 * 18 13 12 20 20 H 1.08004 * 120.00175 * 345.84716 * 19 18 13 21 21 C 1.38814 * 119.99858 * 165.85308 * 19 18 13 22 22 N 1.31615 * 119.99856 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99834 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47292 * 59.99889 * 23 21 19 25 25 H 1.48501 * 109.46975 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47435 * 299.99893 * 23 21 19 27 27 C 1.38659 * 119.95712 * 179.97438 * 3 2 1 28 28 F 1.35099 * 120.11578 * 359.97438 * 27 3 2 29 29 H 1.08994 * 109.47431 * 299.99964 * 1 2 3 30 30 H 1.09002 * 109.47109 * 60.00165 * 1 2 3 31 31 H 1.09006 * 109.47173 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.83369 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.88013 * 179.97438 * 5 4 3 34 34 H 0.97003 * 120.00302 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47605 * 294.97162 * 12 11 9 36 36 H 1.09005 * 109.47419 * 54.97109 * 12 11 9 37 37 H 1.09002 * 110.72475 * 336.74651 * 15 13 12 38 38 H 1.09001 * 110.72480 * 100.02361 * 15 13 12 39 39 H 1.09003 * 111.00183 * 153.57461 * 16 15 13 40 40 H 1.08998 * 111.00531 * 277.42563 * 16 15 13 41 41 H 1.08995 * 110.36986 * 81.83128 * 17 16 15 42 42 H 1.09004 * 110.36280 * 204.03888 * 17 16 15 43 43 H 0.97005 * 120.00003 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2900 2.3746 0.0005 5 6 1.9097 3.6109 0.0000 6 6 3.2889 3.6980 -0.0005 7 9 3.8903 4.9078 -0.0016 8 6 4.0615 2.5317 -0.0059 9 6 5.5346 2.6183 -0.0121 10 8 6.1460 2.6521 1.0384 11 7 6.2023 2.6597 -1.1820 12 6 7.6647 2.7451 -1.1882 13 6 8.1751 2.6514 -2.6276 14 1 7.7039 3.4212 -3.2387 15 6 7.8599 1.2560 -3.2063 16 6 9.1233 0.9353 -4.0479 17 6 10.2401 1.5823 -3.1912 18 7 9.6360 2.8141 -2.6517 19 6 10.3221 3.9260 -2.2414 20 1 9.7964 4.8552 -2.0779 21 6 11.6933 3.8588 -2.0358 22 7 12.3338 2.7264 -2.2346 23 14 12.6292 5.3757 -1.4768 24 1 12.0926 5.8351 -0.1705 25 1 14.0690 5.0429 -1.3305 26 1 12.4700 6.4549 -2.4844 27 6 3.4311 1.2836 0.0005 28 9 4.1684 0.1515 0.0016 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2118 2.3142 0.0014 33 1 1.3137 4.5114 0.0000 34 1 5.7145 2.6331 -2.0201 35 1 7.9751 3.6955 -0.7539 36 1 8.0791 1.9251 -0.6016 37 1 7.7339 0.5262 -2.4065 38 1 6.9736 1.2923 -3.8397 39 1 9.2718 -0.1410 -4.1351 40 1 9.0660 1.4012 -5.0316 41 1 10.5302 0.9151 -2.3796 42 1 11.1037 1.8215 -3.8117 43 1 13.2920 2.6794 -2.0906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028278417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:25 Heat of formation + Delta-G solvation = -105.304128 kcal Electronic energy + Delta-G solvation = -29677.435728 eV Core-core repulsion = 25167.153435 eV Total energy + Delta-G solvation = -4510.282293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.22729 -49.17718 -40.50827 -39.52395 -37.77281 -37.24541 -34.31529 -32.48996 -31.70949 -30.44911 -29.60457 -28.59894 -27.77102 -25.21671 -24.43714 -23.37151 -22.99617 -20.79880 -20.16537 -19.65771 -18.80407 -18.20289 -18.03301 -17.21021 -16.77634 -16.52084 -16.09108 -16.01504 -15.65559 -15.36231 -15.27396 -14.87943 -14.78254 -14.60470 -14.34334 -13.86273 -13.53565 -13.45472 -13.03871 -12.66307 -12.64608 -12.51790 -12.07964 -11.88369 -11.84374 -11.73134 -11.43145 -11.31471 -10.94259 -10.76096 -10.25928 -10.15923 -10.06758 -9.86335 -9.79113 -9.67324 -9.48380 -8.75410 -8.60445 -8.57222 -6.83919 -5.75504 -3.12261 0.29875 0.56208 2.35753 2.71060 2.77474 3.26972 3.42475 3.46044 3.46973 3.48236 3.86985 4.10402 4.31539 4.46694 4.54786 4.64325 4.64494 4.84500 4.99055 5.21788 5.33008 5.36270 5.41178 5.44872 5.47477 5.52554 5.63117 5.82282 5.99487 6.05427 6.13146 6.26367 6.46499 6.53276 6.57261 6.68870 6.69024 6.79094 7.04573 7.52748 7.60136 7.63573 7.80340 8.24094 8.28572 9.18333 9.78764 10.45884 11.36261 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017461 B = 0.002823 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.147797 B = 9916.714305 C =10889.352076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.304 6.304 3 C 0.085 3.915 4 C -0.142 4.142 5 C -0.123 4.123 6 C 0.127 3.873 7 F -0.119 7.119 8 C -0.154 4.154 9 C 0.559 3.441 10 O -0.517 6.517 11 N -0.705 5.705 12 C 0.107 3.893 13 C 0.152 3.848 14 H 0.039 0.961 15 C -0.127 4.127 16 C -0.148 4.148 17 C 0.172 3.828 18 N -0.587 5.587 19 C -0.236 4.236 20 H 0.076 0.924 21 C -0.001 4.001 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.134 3.866 28 F -0.111 7.111 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.398 0.602 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.074 0.926 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.535 -3.664 0.469 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.038 3.962 4 C -0.161 4.161 5 C -0.142 4.142 6 C 0.107 3.893 7 F -0.098 7.098 8 C -0.160 4.160 9 C 0.341 3.659 10 O -0.393 6.393 11 N -0.355 5.355 12 C -0.018 4.018 13 C 0.044 3.956 14 H 0.056 0.944 15 C -0.165 4.165 16 C -0.187 4.187 17 C 0.047 3.953 18 N -0.312 5.312 19 C -0.364 4.364 20 H 0.094 0.906 21 C -0.198 4.198 22 N -0.561 5.561 23 Si 0.741 3.259 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.113 3.887 28 F -0.089 7.089 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.232 0.768 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -26.627 -3.781 1.257 26.924 hybrid contribution 0.232 0.894 0.084 0.927 sum -26.395 -2.888 1.341 26.586 Atomic orbital electron populations 1.23193 0.77479 1.04748 1.01648 1.86198 1.22003 1.24895 1.88625 1.18773 0.90206 0.86211 1.00962 1.21060 1.00830 0.90308 1.03887 1.20929 0.92038 0.99245 1.01997 1.17167 0.90193 0.79472 1.02510 1.91595 1.83807 1.40885 1.93471 1.19949 0.95833 0.91677 1.08502 1.17643 0.85167 0.77976 0.85093 1.90862 1.68240 1.48845 1.31361 1.46111 1.09297 1.72820 1.07285 1.22401 0.75496 1.02843 1.01035 1.21129 0.87769 0.94939 0.91776 0.94373 1.22623 0.97769 0.96997 0.99157 1.23006 0.97155 0.99607 0.98908 1.21469 0.93090 0.86348 0.94376 1.44481 0.98444 1.14813 1.73427 1.18951 0.90253 0.87863 1.39313 0.90644 1.24912 0.96968 0.97159 1.00769 1.69928 1.08320 1.24201 1.53680 0.86219 0.78879 0.81948 0.78847 1.20912 1.21551 1.21057 1.16438 0.85816 0.81616 1.04831 1.91595 1.76336 1.47579 1.93408 0.92176 0.92136 0.87600 0.83019 0.82967 0.76804 0.91054 0.91186 0.91719 0.92378 0.92302 0.92290 0.95600 0.90823 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.76 10.36 -19.78 -0.20 -2.96 16 3 C 0.09 0.83 6.68 -39.25 -0.26 0.56 16 4 C -0.14 -0.96 9.03 -39.39 -0.36 -1.31 16 5 C -0.12 -0.94 10.00 -39.58 -0.40 -1.34 16 6 C 0.13 1.47 7.29 -38.97 -0.28 1.19 16 7 F -0.12 -1.59 16.83 2.25 0.04 -1.55 16 8 C -0.15 -2.12 5.64 -104.87 -0.59 -2.72 16 9 C 0.56 9.81 6.54 -12.46 -0.08 9.73 16 10 O -0.52 -11.31 17.10 5.28 0.09 -11.22 16 11 N -0.70 -11.54 5.34 -61.34 -0.33 -11.86 16 12 C 0.11 2.14 5.08 -4.04 -0.02 2.12 16 13 C 0.15 3.06 3.21 -66.95 -0.21 2.85 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.13 -2.19 6.14 -24.90 -0.15 -2.34 16 16 C -0.15 -2.75 7.09 -24.58 -0.17 -2.93 16 17 C 0.17 4.14 5.42 -2.53 -0.01 4.13 16 18 N -0.59 -14.74 3.13 -162.57 -0.51 -15.25 16 19 C -0.24 -6.51 9.75 -15.06 -0.15 -6.66 16 20 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 21 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 22 N -0.92 -26.86 10.56 55.49 0.59 -26.27 16 23 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.13 1.72 7.30 -38.83 -0.28 1.43 16 28 F -0.11 -1.65 16.67 2.25 0.04 -1.62 16 29 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 30 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 31 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.15 0.48 6.27 -52.49 -0.33 0.15 16 33 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.40 5.28 8.35 -40.82 -0.34 4.94 16 35 H 0.07 1.60 7.90 -51.93 -0.41 1.19 16 36 H 0.07 1.56 8.06 -51.93 -0.42 1.14 16 37 H 0.06 1.12 7.80 -51.93 -0.40 0.71 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 42 H 0.07 1.96 6.90 -51.93 -0.36 1.61 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -34.35 368.83 -7.39 -41.74 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.56 Total: 0.44 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -2.08 Total: 5.69 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.25 Total: -53.38 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.11 Total: -14.18 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.35 -7.39 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028278417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.566 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds