Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36012 * 116.99553 * 2 1 4 4 C 1.38706 * 119.96125 * 0.02562 * 3 2 1 5 5 C 1.38284 * 120.33433 * 180.02562 * 4 3 2 6 6 C 1.38201 * 120.23885 * 359.97438 * 5 4 3 7 7 F 1.35100 * 120.04589 * 179.97438 * 6 5 4 8 8 C 1.39904 * 119.90332 * 0.25161 * 6 5 4 9 9 C 1.47564 * 120.15617 * 179.74822 * 8 6 5 10 10 O 1.21592 * 119.99931 * 90.00313 * 9 8 6 11 11 N 1.34770 * 120.00048 * 269.99662 * 9 8 6 12 12 C 1.46494 * 120.00111 * 180.02562 * 11 9 8 13 13 C 1.53008 * 109.47494 * 174.97241 * 12 11 9 14 14 H 1.08997 * 109.87279 * 55.56541 * 13 12 11 15 15 C 1.54318 * 109.87929 * 294.55271 * 13 12 11 16 16 C 1.55158 * 102.94101 * 218.38575 * 15 13 12 17 17 C 1.54912 * 101.58000 * 35.50510 * 16 15 13 18 18 N 1.47019 * 109.88315 * 176.74355 * 13 12 11 19 19 C 1.36938 * 125.64790 * 298.33598 * 18 13 12 20 20 H 1.08004 * 120.00175 * 345.84716 * 19 18 13 21 21 C 1.38814 * 119.99858 * 165.85308 * 19 18 13 22 22 N 1.31615 * 119.99856 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99834 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47292 * 59.99889 * 23 21 19 25 25 H 1.48501 * 109.46975 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47435 * 299.99893 * 23 21 19 27 27 C 1.38659 * 119.95712 * 179.97438 * 3 2 1 28 28 F 1.35099 * 120.11578 * 359.97438 * 27 3 2 29 29 H 1.08994 * 109.47431 * 299.99964 * 1 2 3 30 30 H 1.09002 * 109.47109 * 60.00165 * 1 2 3 31 31 H 1.09006 * 109.47173 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.83369 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.88013 * 179.97438 * 5 4 3 34 34 H 0.97003 * 120.00302 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47605 * 294.97162 * 12 11 9 36 36 H 1.09005 * 109.47419 * 54.97109 * 12 11 9 37 37 H 1.09002 * 110.72475 * 336.74651 * 15 13 12 38 38 H 1.09001 * 110.72480 * 100.02361 * 15 13 12 39 39 H 1.09003 * 111.00183 * 153.57461 * 16 15 13 40 40 H 1.08998 * 111.00531 * 277.42563 * 16 15 13 41 41 H 1.08995 * 110.36986 * 81.83128 * 17 16 15 42 42 H 1.09004 * 110.36280 * 204.03888 * 17 16 15 43 43 H 0.97005 * 120.00003 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2900 2.3746 0.0005 5 6 1.9097 3.6109 0.0000 6 6 3.2889 3.6980 -0.0005 7 9 3.8903 4.9078 -0.0016 8 6 4.0615 2.5317 -0.0059 9 6 5.5346 2.6183 -0.0121 10 8 6.1460 2.6521 1.0384 11 7 6.2023 2.6597 -1.1820 12 6 7.6647 2.7451 -1.1882 13 6 8.1751 2.6514 -2.6276 14 1 7.7039 3.4212 -3.2387 15 6 7.8599 1.2560 -3.2063 16 6 9.1233 0.9353 -4.0479 17 6 10.2401 1.5823 -3.1912 18 7 9.6360 2.8141 -2.6517 19 6 10.3221 3.9260 -2.2414 20 1 9.7964 4.8552 -2.0779 21 6 11.6933 3.8588 -2.0358 22 7 12.3338 2.7264 -2.2346 23 14 12.6292 5.3757 -1.4768 24 1 12.0926 5.8351 -0.1705 25 1 14.0690 5.0429 -1.3305 26 1 12.4700 6.4549 -2.4844 27 6 3.4311 1.2836 0.0005 28 9 4.1684 0.1515 0.0016 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2118 2.3142 0.0014 33 1 1.3137 4.5114 0.0000 34 1 5.7145 2.6331 -2.0201 35 1 7.9751 3.6955 -0.7539 36 1 8.0791 1.9251 -0.6016 37 1 7.7339 0.5262 -2.4065 38 1 6.9736 1.2923 -3.8397 39 1 9.2718 -0.1410 -4.1351 40 1 9.0660 1.4012 -5.0316 41 1 10.5302 0.9151 -2.3796 42 1 11.1037 1.8215 -3.8117 43 1 13.2920 2.6794 -2.0906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028278417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = -129.417943 kcal Electronic energy + Delta-G solvation = -29678.481382 eV Core-core repulsion = 25167.153435 eV Total energy + Delta-G solvation = -4511.327946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.17128 -50.14079 -41.37905 -40.73272 -39.36635 -38.13658 -35.94059 -34.45635 -32.65121 -31.45848 -31.13041 -30.23101 -28.20706 -26.85832 -26.09160 -24.58302 -23.83327 -22.19297 -21.77846 -21.26916 -19.85999 -19.10237 -18.88357 -18.68448 -18.01809 -17.73998 -17.29215 -16.96148 -16.76763 -16.56247 -16.31420 -16.15958 -15.93683 -15.78623 -15.65846 -15.58438 -14.95421 -14.67975 -14.03251 -13.98640 -13.69086 -13.54318 -13.42377 -13.36578 -13.22182 -13.04145 -12.89659 -12.67967 -12.33039 -12.08223 -12.01846 -11.89813 -11.79620 -11.52697 -11.45506 -11.37741 -10.70233 -10.32634 -10.30933 -9.34354 -8.90136 -7.90602 -5.28797 -0.50459 -0.18727 1.13820 1.42443 1.46504 1.51945 1.75364 2.03983 2.20728 2.47441 2.64748 3.12189 3.26803 3.29697 3.58991 3.69168 3.73037 3.89069 3.91889 4.00267 4.21427 4.37836 4.38864 4.48241 4.48465 4.54331 4.59045 4.66378 4.75808 4.79963 4.87827 4.89143 4.94498 5.07393 5.11415 5.22467 5.30153 5.43232 5.49081 5.63666 5.75423 6.14033 6.19343 6.25706 6.91072 7.06298 7.72699 8.38711 9.20027 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017461 B = 0.002823 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.147797 B = 9916.714305 C =10889.352076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.327 6.327 3 C 0.095 3.905 4 C -0.115 4.115 5 C -0.096 4.096 6 C 0.107 3.893 7 F -0.136 7.136 8 C -0.173 4.173 9 C 0.558 3.442 10 O -0.573 6.573 11 N -0.690 5.690 12 C 0.126 3.874 13 C 0.150 3.850 14 H 0.056 0.944 15 C -0.115 4.115 16 C -0.132 4.132 17 C 0.173 3.827 18 N -0.609 5.609 19 C -0.244 4.244 20 H 0.077 0.923 21 C -0.059 4.059 22 N -0.945 5.945 23 Si 0.973 3.027 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.272 1.272 27 C 0.102 3.898 28 F -0.134 7.134 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.202 0.798 33 H 0.193 0.807 34 H 0.417 0.583 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.073 0.927 41 H -0.010 1.010 42 H 0.040 0.960 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.472 -3.156 -0.668 32.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.241 6.241 3 C 0.048 3.952 4 C -0.134 4.134 5 C -0.115 4.115 6 C 0.087 3.913 7 F -0.114 7.114 8 C -0.179 4.179 9 C 0.342 3.658 10 O -0.452 6.452 11 N -0.341 5.341 12 C 0.000 4.000 13 C 0.042 3.958 14 H 0.073 0.927 15 C -0.153 4.153 16 C -0.170 4.170 17 C 0.048 3.952 18 N -0.333 5.333 19 C -0.373 4.373 20 H 0.095 0.905 21 C -0.253 4.253 22 N -0.593 5.593 23 Si 0.801 3.199 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.197 1.197 27 C 0.081 3.919 28 F -0.113 7.113 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.219 0.781 33 H 0.210 0.790 34 H 0.254 0.746 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.008 0.992 42 H 0.058 0.942 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -31.640 -3.277 0.076 31.810 hybrid contribution 1.556 0.691 0.461 1.764 sum -30.084 -2.586 0.537 30.199 Atomic orbital electron populations 1.23615 0.74651 1.06441 1.03664 1.86194 1.24906 1.24773 1.88235 1.18853 0.89047 0.87691 0.99644 1.21611 1.02857 0.88449 1.00449 1.21381 0.90088 1.01234 0.98755 1.17502 0.91655 0.78077 1.04060 1.91553 1.84420 1.41650 1.93806 1.19599 0.92989 0.93378 1.11893 1.18289 0.87136 0.76159 0.84168 1.90817 1.70062 1.51167 1.33195 1.45842 1.07703 1.72280 1.08287 1.21867 0.77774 0.99852 1.00474 1.21324 0.85160 0.97595 0.91672 0.92676 1.22611 0.98871 0.94491 0.99312 1.22870 0.95017 1.00665 0.98446 1.21287 0.94318 0.85969 0.93600 1.44742 1.00670 1.14369 1.73569 1.19280 0.90739 0.88962 1.38285 0.90518 1.25705 0.98007 0.99923 1.01667 1.70134 1.07987 1.26006 1.55159 0.85240 0.77199 0.79048 0.78398 1.20954 1.21801 1.19716 1.16702 0.87274 0.80492 1.07398 1.91523 1.77198 1.48644 1.93930 0.90212 0.89830 0.86433 0.78104 0.78960 0.74609 0.94210 0.94267 0.92066 0.87749 0.89894 0.90793 0.99168 0.94173 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.81 113.37 1.11 1.15 16 2 O -0.33 -4.99 10.36 -93.68 -0.97 -5.96 16 3 C 0.09 1.57 6.68 22.48 0.15 1.72 16 4 C -0.12 -0.95 9.03 22.39 0.20 -0.75 16 5 C -0.10 -1.03 10.00 22.27 0.22 -0.81 16 6 C 0.11 2.31 7.29 22.66 0.17 2.48 16 7 F -0.14 -3.53 16.83 44.97 0.76 -2.77 16 8 C -0.17 -4.77 5.64 -20.03 -0.11 -4.89 16 9 C 0.56 20.48 6.54 86.70 0.57 21.05 16 10 O -0.57 -26.82 17.10 -4.01 -0.07 -26.89 16 11 N -0.69 -23.16 5.34 -466.24 -2.49 -25.65 16 12 C 0.13 5.31 5.08 86.38 0.44 5.75 16 13 C 0.15 6.04 3.21 45.34 0.15 6.19 16 14 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 15 C -0.12 -3.75 6.14 31.78 0.20 -3.55 16 16 C -0.13 -4.72 7.09 31.99 0.23 -4.49 16 17 C 0.17 8.67 5.42 86.86 0.47 9.14 16 18 N -0.61 -31.55 3.13 -668.26 -2.09 -33.64 16 19 C -0.24 -13.94 9.75 84.03 0.82 -13.12 16 20 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.06 -3.46 5.47 84.86 0.46 -3.00 16 22 N -0.95 -58.18 10.56 21.65 0.23 -57.95 16 23 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 24 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 C 0.10 2.57 7.30 22.76 0.17 2.73 16 28 F -0.13 -4.14 16.67 44.97 0.75 -3.39 16 29 H 0.08 -0.01 7.65 -2.39 -0.02 -0.03 16 30 H 0.08 -0.07 7.66 -2.39 -0.02 -0.09 16 31 H 0.12 0.15 8.14 -2.38 -0.02 0.13 16 32 H 0.20 -0.29 6.27 -2.91 -0.02 -0.31 16 33 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.42 10.73 8.35 -92.71 -0.77 9.96 16 35 H 0.04 1.90 7.90 -2.39 -0.02 1.89 16 36 H 0.04 1.88 8.06 -2.38 -0.02 1.86 16 37 H 0.06 2.06 7.80 -2.39 -0.02 2.04 16 38 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 41 H -0.01 -0.55 8.07 -2.39 -0.02 -0.57 16 42 H 0.04 2.24 6.90 -2.38 -0.02 2.23 16 43 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -83.59 368.83 3.66 -79.93 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.29 Total: 7.30 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 5.23 Total: 19.60 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -4.35 Total: -117.24 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.04 Total: -32.85 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 1.51 Total: -6.16 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -83.59 3.66 -79.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028278417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.493 kcal (2) G-P(sol) polarization free energy of solvation -83.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds