Wall clock time and date at job start Sat Apr 11 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99888 * 2 1 4 4 C 1.53000 * 109.47048 * 293.95182 * 3 2 1 5 5 C 1.52996 * 109.46990 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47391 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00281 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99800 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99744 * 180.02562 * 7 6 5 10 10 S 1.81005 * 109.46671 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99761 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00321 * 0.02562 * 11 10 9 13 13 C 1.38801 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00041 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99650 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47390 * 59.99866 * 15 13 11 17 17 H 1.48502 * 109.46879 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47351 * 299.99424 * 15 13 11 19 19 C 1.46902 * 110.99573 * 123.95366 * 2 1 3 20 20 C 1.50699 * 109.47144 * 66.05037 * 19 2 1 21 21 C 1.38247 * 119.97178 * 269.72096 * 20 19 2 22 22 C 1.38198 * 120.02538 * 179.72986 * 21 20 19 23 23 C 1.38457 * 119.97471 * 0.56664 * 22 21 20 24 24 F 1.35097 * 120.02656 * 179.68596 * 23 22 21 25 25 C 1.38466 * 119.94600 * 359.70713 * 23 22 21 26 26 C 1.38197 * 119.97475 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.46544 * 60.00058 * 1 2 3 28 28 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47033 * 300.00113 * 1 2 3 30 30 H 1.08992 * 109.47062 * 53.95734 * 3 2 1 31 31 H 1.09003 * 109.46753 * 173.95421 * 3 2 1 32 32 H 1.09001 * 109.47085 * 300.00035 * 4 3 2 33 33 H 1.08993 * 109.47201 * 60.00475 * 4 3 2 34 34 H 1.09004 * 109.47112 * 300.00527 * 5 4 3 35 35 H 1.09003 * 109.47557 * 59.99525 * 5 4 3 36 36 H 0.97004 * 119.99411 * 359.97438 * 6 5 4 37 37 H 1.09001 * 109.47061 * 299.99697 * 9 7 6 38 38 H 1.08993 * 109.47360 * 60.00220 * 9 7 6 39 39 H 0.97004 * 119.99704 * 180.02562 * 14 13 11 40 40 H 1.09001 * 109.46557 * 186.04354 * 19 2 1 41 41 H 1.08994 * 109.47575 * 306.04356 * 19 2 1 42 42 H 1.08006 * 119.98817 * 359.97438 * 21 20 19 43 43 H 1.08000 * 120.01011 * 180.25429 * 22 21 20 44 44 H 1.08001 * 120.00752 * 179.97438 * 25 23 22 45 45 H 1.07993 * 119.98158 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1803 3.4855 -1.3185 6 7 1.8313 4.1426 -2.5805 7 6 2.2127 5.4156 -2.8055 8 8 2.8453 6.0169 -1.9634 9 6 1.8532 6.0916 -4.1035 10 16 2.5013 7.7816 -4.1032 11 6 1.9528 8.3199 -5.6888 12 1 1.3929 7.6487 -6.3231 13 6 2.2402 9.6067 -6.1226 14 7 2.9222 10.4250 -5.3493 15 14 1.6581 10.1776 -7.8032 16 1 0.1764 10.1002 -7.8665 17 1 2.0900 11.5808 -8.0264 18 1 2.2445 9.3059 -8.8527 19 6 1.9954 -0.7660 1.1376 20 6 1.6369 -2.2204 0.9728 21 6 0.4535 -2.7040 1.4991 22 6 0.1211 -4.0364 1.3438 23 6 0.9792 -4.8896 0.6710 24 9 0.6582 -6.1936 0.5241 25 6 2.1668 -4.4053 0.1492 26 6 2.4941 -3.0712 0.3001 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3443 0.1082 32 1 2.0659 1.5015 -2.1492 33 1 0.5473 2.0845 -1.4265 34 1 1.7464 4.0417 -0.4875 35 1 3.2646 3.4582 -1.2104 36 1 1.3257 3.6615 -3.2542 37 1 2.2869 5.5359 -4.9349 38 1 0.7689 6.1187 -4.2109 39 1 3.1227 11.3243 -5.6523 40 1 3.0797 -0.6611 1.1756 41 1 1.5611 -0.3873 2.0628 42 1 -0.2133 -2.0394 2.0285 43 1 -0.8054 -4.4130 1.7515 44 1 2.8371 -5.0701 -0.3754 45 1 3.4205 -2.6934 -0.1065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234146567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:36 Heat of formation + Delta-G solvation = -60.698519 kcal Electronic energy + Delta-G solvation = -24875.978946 eV Core-core repulsion = 20933.844073 eV Total energy + Delta-G solvation = -3942.134872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.32282 -39.98268 -39.18135 -37.83971 -35.13080 -32.57917 -32.42242 -31.67087 -30.93346 -29.04907 -27.68346 -25.96427 -25.41673 -23.54390 -23.24391 -21.57424 -21.26070 -20.20100 -18.11920 -17.82554 -16.91796 -16.54714 -16.40100 -16.18385 -16.03833 -16.00428 -15.35051 -15.18900 -14.80067 -14.75678 -14.39455 -14.11961 -14.01165 -13.79786 -13.70132 -13.12109 -12.84861 -12.75543 -12.60130 -12.43602 -12.22635 -12.13121 -11.83094 -11.65879 -11.55375 -11.44329 -11.04111 -11.03864 -10.98286 -10.76309 -9.82056 -9.58920 -9.40419 -9.13962 -9.05961 -8.88055 -8.76031 -8.23592 -6.49622 -6.21104 -3.91773 0.61283 0.74195 2.93398 3.07143 3.11074 3.23894 3.27907 3.31397 3.57993 3.79279 3.80727 4.18246 4.21083 4.22732 4.41495 4.57099 4.63974 4.72546 4.77802 4.84121 4.97786 5.00749 5.13370 5.14054 5.18514 5.22058 5.24311 5.38364 5.40661 5.49734 5.51097 5.59215 5.63254 5.67624 5.73207 5.85917 5.92999 5.99319 6.01438 6.14788 6.38186 6.53727 6.56413 6.64952 7.59688 7.72024 8.35461 8.62418 9.24069 10.86281 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031825 B = 0.001333 C = 0.001308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.602758 B =21001.354733 C =21400.791780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.536 5.536 3 C 0.058 3.942 4 C -0.127 4.127 5 C 0.122 3.878 6 N -0.739 5.739 7 C 0.531 3.469 8 O -0.519 6.519 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.092 3.908 20 C -0.087 4.087 21 C -0.085 4.085 22 C -0.155 4.155 23 C 0.096 3.904 24 F -0.141 7.141 25 C -0.154 4.154 26 C -0.068 4.068 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.094 -30.798 14.138 34.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.260 5.260 3 C -0.070 4.070 4 C -0.165 4.165 5 C -0.002 4.002 6 N -0.394 5.394 7 C 0.317 3.683 8 O -0.393 6.393 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.035 4.035 20 C -0.087 4.087 21 C -0.104 4.104 22 C -0.174 4.174 23 C 0.076 3.924 24 F -0.120 7.120 25 C -0.173 4.173 26 C -0.087 4.087 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.798 -29.864 15.153 33.703 hybrid contribution -1.769 -0.492 -1.693 2.498 sum -5.567 -30.357 13.460 33.670 Atomic orbital electron populations 1.22555 0.87266 1.02375 1.01117 1.61981 1.08261 1.13579 1.42179 1.22041 1.00632 0.87426 0.96891 1.21774 1.01719 0.94570 0.98447 1.21185 1.00429 0.91725 0.86905 1.45981 1.59462 1.14266 1.19662 1.20310 0.78555 0.80786 0.88634 1.90699 1.38362 1.63890 1.46342 1.23532 1.04998 1.05136 0.96753 1.85390 1.72388 1.01515 1.24113 1.22835 1.41482 1.01478 1.02691 0.90970 1.24986 0.94768 0.95514 0.98255 1.70009 1.36766 1.07049 1.36481 0.86226 0.79092 0.77769 0.82420 1.19953 1.20804 1.19935 1.21053 1.00924 0.89324 0.92195 1.19801 0.94838 0.95530 0.98565 1.20946 0.96205 0.94494 0.98732 1.21121 1.00524 0.93969 1.01755 1.17766 0.95516 0.78438 1.00646 1.91505 1.92831 1.33646 1.94027 1.21192 0.96487 0.97050 1.02550 1.20920 0.99658 0.91821 0.96276 0.90825 0.91074 0.95427 0.94184 0.90136 0.90290 0.91211 0.91835 0.91586 0.76807 0.89201 0.89245 0.92132 0.89439 0.93540 0.85250 0.84788 0.84675 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.98 60.07 0.54 0.63 16 2 N -0.54 -3.53 4.75 -244.37 -1.16 -4.69 16 3 C 0.06 0.39 4.96 -3.82 -0.02 0.37 16 4 C -0.13 -0.96 5.25 -26.73 -0.14 -1.10 16 5 C 0.12 1.33 5.67 -4.04 -0.02 1.31 16 6 N -0.74 -9.63 5.56 -60.29 -0.33 -9.96 16 7 C 0.53 9.88 7.85 -10.99 -0.09 9.79 16 8 O -0.52 -11.80 15.86 5.56 0.09 -11.71 16 9 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 15 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 19 C 0.09 0.51 5.12 -4.98 -0.03 0.48 16 20 C -0.09 -0.52 4.88 -104.62 -0.51 -1.03 16 21 C -0.09 -0.48 7.91 -39.59 -0.31 -0.79 16 22 C -0.15 -0.96 10.03 -39.52 -0.40 -1.36 16 23 C 0.10 0.71 7.30 -39.42 -0.29 0.42 16 24 F -0.14 -1.20 17.27 2.25 0.04 -1.17 16 25 C -0.15 -0.99 10.03 -39.51 -0.40 -1.39 16 26 C -0.07 -0.41 9.70 -39.60 -0.38 -0.79 16 27 H 0.07 0.46 6.47 -51.93 -0.34 0.12 16 28 H 0.07 0.43 5.91 -51.93 -0.31 0.12 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 31 H 0.08 0.52 7.93 -51.93 -0.41 0.10 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.50 6.55 -51.93 -0.34 0.16 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.40 4.01 8.47 -40.82 -0.35 3.67 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.09 0.43 7.87 -51.93 -0.41 0.02 16 41 H 0.05 0.24 8.06 -51.93 -0.42 -0.18 16 42 H 0.13 0.52 8.00 -52.48 -0.42 0.10 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 393.47 15.07 5.93 5.93 Total: -1.00 -34.78 393.47 -10.32 -45.10 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.76 Total: -1.24 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.62 Total: -9.30 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: -0.76 Total: -40.09 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.78 -10.32 -45.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234146567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.597 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds