Wall clock time and date at job start Sat Apr 11 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 120.00205 * 2 1 4 4 C 1.52997 * 109.46804 * 269.99870 * 3 2 1 5 5 F 1.39898 * 109.47662 * 299.99844 * 4 3 2 6 6 F 1.39906 * 109.47052 * 60.00528 * 4 3 2 7 7 C 1.34775 * 119.99771 * 180.02562 * 2 1 3 8 8 O 1.21353 * 120.00016 * 183.65372 * 7 2 1 9 9 C 1.49445 * 120.00145 * 3.65093 * 7 2 1 10 10 O 1.21348 * 120.00275 * 354.17506 * 9 7 2 11 11 N 1.34780 * 120.00029 * 174.17344 * 9 7 2 12 12 C 1.46503 * 120.00006 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.47198 * 324.99869 * 12 11 9 14 14 C 1.53001 * 109.47082 * 204.99937 * 12 11 9 15 15 C 1.50693 * 109.47386 * 64.99591 * 14 12 11 16 16 H 1.08006 * 119.99759 * 0.02562 * 15 14 12 17 17 C 1.37880 * 120.00144 * 179.72094 * 15 14 12 18 18 N 1.31514 * 119.99642 * 0.28513 * 17 15 14 19 19 Si 1.86799 * 119.99891 * 180.27732 * 17 15 14 20 20 H 1.48494 * 109.47331 * 60.00347 * 19 17 15 21 21 H 1.48500 * 109.46841 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47111 * 300.00416 * 19 17 15 23 23 C 1.50703 * 109.47109 * 84.99639 * 12 11 9 24 24 C 1.38237 * 119.99962 * 39.73144 * 23 12 11 25 25 C 1.38237 * 119.99682 * 179.78764 * 24 23 12 26 26 C 1.38229 * 120.00000 * 0.43991 * 25 24 23 27 27 C 1.38237 * 120.00378 * 359.81017 * 26 25 24 28 28 C 1.38231 * 119.99770 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.46795 * 263.99513 * 1 2 3 30 30 H 1.09005 * 109.46701 * 23.99125 * 1 2 3 31 31 H 1.09001 * 109.47081 * 143.99569 * 1 2 3 32 32 H 1.08993 * 109.46685 * 30.00094 * 3 2 1 33 33 H 1.08999 * 109.46809 * 150.00484 * 3 2 1 34 34 H 1.09005 * 109.46534 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00107 * 359.97438 * 11 9 7 36 36 H 1.09005 * 109.46817 * 304.99409 * 14 12 11 37 37 H 1.09000 * 109.46944 * 184.99894 * 14 12 11 38 38 H 0.97000 * 119.99780 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.00085 * 359.97438 * 24 23 12 40 40 H 1.08002 * 119.99537 * 180.26654 * 25 24 23 41 41 H 1.08008 * 119.99936 * 179.83616 * 26 25 24 42 42 H 1.07998 * 120.00402 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.00025 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 9 3.2086 0.7354 -2.1020 6 9 1.2301 1.8777 -2.1020 7 6 2.1388 -1.1672 -0.0005 8 8 3.3505 -1.1684 0.0665 9 6 1.3939 -2.4601 -0.0835 10 8 0.1810 -2.4652 -0.0438 11 7 2.0691 -3.6205 -0.2025 12 6 1.3387 -4.8879 -0.2844 13 1 0.4476 -4.8348 0.3410 14 6 2.2369 -6.0265 0.2032 15 6 2.5406 -5.8352 1.6668 16 1 2.1333 -4.9865 2.1964 17 6 3.3332 -6.7469 2.3313 18 7 3.8287 -7.7804 1.6865 19 14 3.7033 -6.5139 4.1474 20 1 2.4326 -6.5161 4.9158 21 1 4.5710 -7.6217 4.6218 22 1 4.4009 -5.2184 4.3482 23 6 0.9348 -5.1434 -1.7136 24 6 1.8074 -4.8426 -2.7428 25 6 1.4385 -5.0811 -4.0535 26 6 0.1938 -5.6119 -4.3356 27 6 -0.6808 -5.9080 -3.3067 28 6 -0.3103 -5.6736 -1.9958 29 1 -0.3633 -0.1075 1.0220 30 1 -0.3633 0.9389 -0.4179 31 1 -0.3633 -0.8314 -0.6041 32 1 1.6085 2.0283 0.5138 33 1 3.1500 1.1383 0.5138 34 1 2.9972 2.6545 -1.4424 35 1 3.0385 -3.6164 -0.2346 36 1 3.1675 -6.0237 -0.3644 37 1 1.7265 -6.9788 0.0595 38 1 4.3867 -8.4216 2.1539 39 1 2.7783 -4.4241 -2.5226 40 1 2.1219 -4.8501 -4.8573 41 1 -0.0954 -5.7958 -5.3598 42 1 -1.6531 -6.3231 -3.5271 43 1 -0.9933 -5.9052 -1.1920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261167026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:59 Heat of formation + Delta-G solvation = -137.374163 kcal Electronic energy + Delta-G solvation = -30250.716629 eV Core-core repulsion = 25739.043675 eV Total energy + Delta-G solvation = -4511.672954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.07950 -47.08855 -40.60170 -39.15194 -38.01074 -36.20014 -35.11849 -32.74945 -31.16706 -30.54889 -30.47911 -28.86793 -26.85642 -25.52922 -24.43871 -22.49446 -22.26302 -21.92485 -19.96650 -19.74924 -17.95860 -17.79231 -17.24053 -17.05380 -16.77681 -16.37429 -16.15340 -15.57149 -15.39358 -14.88236 -14.76648 -14.51321 -14.13605 -13.98465 -13.73614 -13.47676 -13.45360 -13.05316 -12.98105 -12.73646 -12.67278 -12.63296 -12.51145 -12.36037 -12.11754 -11.59320 -11.55155 -11.14861 -11.09725 -10.92286 -10.72593 -10.64709 -10.46995 -9.82207 -9.35968 -9.15229 -8.90725 -8.62733 -8.53083 -8.45049 -8.22659 -6.08865 -4.12769 1.66614 1.73582 1.78233 2.38779 3.30511 3.34951 3.37963 3.39971 3.64530 3.67108 3.99899 4.17322 4.24428 4.40595 4.52469 4.75774 5.02761 5.13423 5.22043 5.23995 5.25645 5.28228 5.34312 5.50505 5.60923 5.87589 5.89374 5.95129 6.07773 6.16382 6.30532 6.38986 6.50577 6.73189 6.82057 6.83572 6.90402 7.05158 7.37303 7.45468 7.48965 7.67118 7.86438 7.99771 8.23084 8.41389 8.91839 9.52485 11.01601 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008474 B = 0.004388 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.441304 B = 6380.085432 C = 8634.544326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.595 5.595 3 C 0.063 3.937 4 C 0.244 3.756 5 F -0.195 7.195 6 F -0.205 7.205 7 C 0.510 3.490 8 O -0.507 6.507 9 C 0.506 3.494 10 O -0.525 6.525 11 N -0.663 5.663 12 C 0.183 3.817 13 H 0.092 0.908 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.076 4.076 24 C -0.108 4.108 25 C -0.123 4.123 26 C -0.132 4.132 27 C -0.123 4.123 28 C -0.106 4.106 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.414 0.586 36 H 0.027 0.973 37 H 0.039 0.961 38 H 0.263 0.737 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 16.749 -7.961 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.329 5.329 3 C -0.061 4.061 4 C 0.189 3.811 5 F -0.176 7.176 6 F -0.186 7.186 7 C 0.293 3.707 8 O -0.381 6.381 9 C 0.286 3.714 10 O -0.404 6.404 11 N -0.312 5.312 12 C 0.080 3.920 13 H 0.110 0.890 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.141 4.141 26 C -0.151 4.151 27 C -0.141 4.141 28 C -0.124 4.124 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.250 0.750 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.910 16.512 -7.882 19.227 hybrid contribution 0.690 0.095 0.899 1.137 sum -5.220 16.607 -6.983 18.757 Atomic orbital electron populations 1.22490 0.76837 1.04584 1.03634 1.47531 1.08528 1.04180 1.72698 1.22707 1.01457 0.87334 0.94628 1.22496 0.78050 0.91717 0.88845 1.93048 1.75854 1.65928 1.82819 1.92983 1.46374 1.96070 1.83198 1.20528 0.87602 0.85401 0.77200 1.90764 1.13416 1.87100 1.46807 1.19773 0.87628 0.85114 0.78865 1.90611 1.13238 1.86411 1.50134 1.45873 1.11622 1.04922 1.68829 1.20438 0.97281 0.83641 0.90685 0.88963 1.19415 0.94100 0.91428 0.96426 1.21065 1.31193 1.09594 0.94325 0.92489 1.24966 0.95680 0.95051 0.98262 1.69943 1.33731 1.12810 1.36437 0.86646 0.78336 0.77744 0.85256 1.20208 1.21251 1.20176 1.20472 0.93814 0.97212 0.96184 1.20961 0.99368 0.99888 0.92362 1.21055 0.96593 1.00085 0.96409 1.21017 0.94561 1.00804 0.98682 1.21040 0.99405 1.00756 0.92882 1.20996 0.95822 0.99082 0.96548 0.92092 0.91578 0.86959 0.87044 0.86490 0.86517 0.74969 0.95476 0.94334 0.92754 0.86466 0.86625 0.86764 0.86518 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 9.30 59.85 0.56 1.32 16 2 N -0.59 -7.68 2.79 -182.09 -0.51 -8.19 16 3 C 0.06 0.57 5.70 -4.04 -0.02 0.55 16 4 C 0.24 2.22 5.60 37.16 0.21 2.42 16 5 F -0.20 -2.62 16.42 2.25 0.04 -2.59 16 6 F -0.20 -2.18 16.37 2.25 0.04 -2.15 16 7 C 0.51 8.41 7.28 -11.59 -0.08 8.32 16 8 O -0.51 -9.22 15.64 5.49 0.09 -9.14 16 9 C 0.51 9.18 7.73 -11.59 -0.09 9.09 16 10 O -0.53 -9.83 12.80 5.50 0.07 -9.76 16 11 N -0.66 -12.62 4.01 -55.36 -0.22 -12.84 16 12 C 0.18 3.69 2.12 -69.08 -0.15 3.54 16 13 H 0.09 1.95 7.44 -51.93 -0.39 1.57 16 14 C 0.02 0.56 4.50 -27.89 -0.13 0.44 16 15 C -0.52 -13.93 8.84 -34.44 -0.30 -14.23 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.08 -1.39 4.92 -104.62 -0.51 -1.90 16 24 C -0.11 -1.85 9.33 -39.58 -0.37 -2.22 16 25 C -0.12 -1.86 10.05 -39.59 -0.40 -2.26 16 26 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 27 C -0.12 -1.80 10.05 -39.58 -0.40 -2.19 16 28 C -0.11 -1.78 9.67 -39.58 -0.38 -2.16 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.60 7.39 -51.93 -0.38 0.22 16 31 H 0.11 1.57 5.35 -51.94 -0.28 1.29 16 32 H 0.11 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.12 1.08 7.37 -51.93 -0.38 0.69 16 34 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.41 7.92 8.09 -40.82 -0.33 7.59 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.12 1.98 7.71 -52.49 -0.40 1.57 16 40 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 42 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.91 8.04 -52.49 -0.42 1.49 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -32.35 375.00 -7.21 -39.55 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.51 Total: 8.05 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.56 Total: 0.08 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.01 Total: -45.96 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.16 Total: -18.90 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.73 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.35 -7.21 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261167026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.822 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds