Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 120.00205 * 2 1 4 4 C 1.52997 * 109.46804 * 269.99870 * 3 2 1 5 5 F 1.39898 * 109.47662 * 299.99844 * 4 3 2 6 6 F 1.39906 * 109.47052 * 60.00528 * 4 3 2 7 7 C 1.34775 * 119.99771 * 180.02562 * 2 1 3 8 8 O 1.21353 * 120.00016 * 183.65372 * 7 2 1 9 9 C 1.49445 * 120.00145 * 3.65093 * 7 2 1 10 10 O 1.21348 * 120.00275 * 354.17506 * 9 7 2 11 11 N 1.34780 * 120.00029 * 174.17344 * 9 7 2 12 12 C 1.46503 * 120.00006 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.47198 * 324.99869 * 12 11 9 14 14 C 1.53001 * 109.47082 * 204.99937 * 12 11 9 15 15 C 1.50693 * 109.47386 * 64.99591 * 14 12 11 16 16 H 1.08006 * 119.99759 * 0.02562 * 15 14 12 17 17 C 1.37880 * 120.00144 * 179.72094 * 15 14 12 18 18 N 1.31514 * 119.99642 * 0.28513 * 17 15 14 19 19 Si 1.86799 * 119.99891 * 180.27732 * 17 15 14 20 20 H 1.48494 * 109.47331 * 60.00347 * 19 17 15 21 21 H 1.48500 * 109.46841 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47111 * 300.00416 * 19 17 15 23 23 C 1.50703 * 109.47109 * 84.99639 * 12 11 9 24 24 C 1.38237 * 119.99962 * 39.73144 * 23 12 11 25 25 C 1.38237 * 119.99682 * 179.78764 * 24 23 12 26 26 C 1.38229 * 120.00000 * 0.43991 * 25 24 23 27 27 C 1.38237 * 120.00378 * 359.81017 * 26 25 24 28 28 C 1.38231 * 119.99770 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.46795 * 263.99513 * 1 2 3 30 30 H 1.09005 * 109.46701 * 23.99125 * 1 2 3 31 31 H 1.09001 * 109.47081 * 143.99569 * 1 2 3 32 32 H 1.08993 * 109.46685 * 30.00094 * 3 2 1 33 33 H 1.08999 * 109.46809 * 150.00484 * 3 2 1 34 34 H 1.09005 * 109.46534 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00107 * 359.97438 * 11 9 7 36 36 H 1.09005 * 109.46817 * 304.99409 * 14 12 11 37 37 H 1.09000 * 109.46944 * 184.99894 * 14 12 11 38 38 H 0.97000 * 119.99780 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.00085 * 359.97438 * 24 23 12 40 40 H 1.08002 * 119.99537 * 180.26654 * 25 24 23 41 41 H 1.08008 * 119.99936 * 179.83616 * 26 25 24 42 42 H 1.07998 * 120.00402 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.00025 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 9 3.2086 0.7354 -2.1020 6 9 1.2301 1.8777 -2.1020 7 6 2.1388 -1.1672 -0.0005 8 8 3.3505 -1.1684 0.0665 9 6 1.3939 -2.4601 -0.0835 10 8 0.1810 -2.4652 -0.0438 11 7 2.0691 -3.6205 -0.2025 12 6 1.3387 -4.8879 -0.2844 13 1 0.4476 -4.8348 0.3410 14 6 2.2369 -6.0265 0.2032 15 6 2.5406 -5.8352 1.6668 16 1 2.1333 -4.9865 2.1964 17 6 3.3332 -6.7469 2.3313 18 7 3.8287 -7.7804 1.6865 19 14 3.7033 -6.5139 4.1474 20 1 2.4326 -6.5161 4.9158 21 1 4.5710 -7.6217 4.6218 22 1 4.4009 -5.2184 4.3482 23 6 0.9348 -5.1434 -1.7136 24 6 1.8074 -4.8426 -2.7428 25 6 1.4385 -5.0811 -4.0535 26 6 0.1938 -5.6119 -4.3356 27 6 -0.6808 -5.9080 -3.3067 28 6 -0.3103 -5.6736 -1.9958 29 1 -0.3633 -0.1075 1.0220 30 1 -0.3633 0.9389 -0.4179 31 1 -0.3633 -0.8314 -0.6041 32 1 1.6085 2.0283 0.5138 33 1 3.1500 1.1383 0.5138 34 1 2.9972 2.6545 -1.4424 35 1 3.0385 -3.6164 -0.2346 36 1 3.1675 -6.0237 -0.3644 37 1 1.7265 -6.9788 0.0595 38 1 4.3867 -8.4216 2.1539 39 1 2.7783 -4.4241 -2.5226 40 1 2.1219 -4.8501 -4.8573 41 1 -0.0954 -5.7958 -5.3598 42 1 -1.6531 -6.3231 -3.5271 43 1 -0.9933 -5.9052 -1.1920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261167026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = -157.087392 kcal Electronic energy + Delta-G solvation = -30251.571459 eV Core-core repulsion = 25739.043675 eV Total energy + Delta-G solvation = -4512.527784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.87707 -47.91568 -41.93626 -40.44912 -39.34250 -37.45861 -36.54519 -34.74485 -32.61525 -31.71695 -31.37275 -30.59331 -27.99165 -27.05370 -25.72532 -23.86545 -23.63197 -23.17018 -21.39028 -21.06046 -19.06399 -18.72115 -18.59604 -18.24624 -18.01138 -17.73145 -17.40135 -16.89596 -16.63823 -16.55985 -16.07151 -15.94856 -15.31476 -14.99373 -14.90332 -14.84980 -14.46013 -14.29717 -14.21783 -14.11046 -14.07957 -13.72655 -13.61895 -13.48390 -13.41316 -13.16827 -12.95232 -12.65468 -12.53162 -12.43296 -12.25137 -12.13259 -11.89952 -11.64321 -11.37935 -10.63233 -10.42560 -10.22520 -9.91206 -9.77711 -9.55815 -8.21711 -6.32104 0.31943 0.46820 0.53989 1.24048 1.39126 1.40540 1.48415 2.08703 2.38842 2.42310 2.92959 2.93851 3.12175 3.32048 3.38118 3.58937 3.85809 3.92129 4.00057 4.18831 4.27309 4.30646 4.37017 4.37538 4.49317 4.59814 4.67631 4.71448 4.75557 4.91450 5.09695 5.13482 5.18014 5.25689 5.38900 5.52809 5.59295 5.62738 5.72873 5.75092 5.84202 6.12400 6.17065 6.25271 6.63566 6.79495 6.94799 7.36662 8.88900 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008474 B = 0.004388 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.441304 B = 6380.085432 C = 8634.544326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.586 5.586 3 C 0.056 3.944 4 C 0.235 3.765 5 F -0.225 7.225 6 F -0.214 7.214 7 C 0.507 3.493 8 O -0.532 6.532 9 C 0.501 3.499 10 O -0.534 6.534 11 N -0.668 5.668 12 C 0.200 3.800 13 H 0.076 0.924 14 C 0.036 3.964 15 C -0.533 4.533 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.955 3.045 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.272 1.272 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.124 4.124 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.116 0.884 34 H 0.171 0.829 35 H 0.410 0.590 36 H 0.007 0.993 37 H 0.014 0.986 38 H 0.264 0.736 39 H 0.109 0.891 40 H 0.141 0.859 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 18.852 -8.571 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.320 5.320 3 C -0.066 4.066 4 C 0.181 3.819 5 F -0.206 7.206 6 F -0.196 7.196 7 C 0.290 3.710 8 O -0.409 6.409 9 C 0.282 3.718 10 O -0.413 6.413 11 N -0.318 5.318 12 C 0.096 3.904 13 H 0.094 0.906 14 C -0.001 4.001 15 C -0.571 4.571 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.781 3.219 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.102 4.102 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.143 4.143 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.174 0.826 33 H 0.134 0.866 34 H 0.187 0.813 35 H 0.246 0.754 36 H 0.026 0.974 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.127 0.873 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.167 0.833 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.897 18.660 -8.495 21.632 hybrid contribution 0.901 -0.496 1.012 1.443 sum -5.995 18.164 -7.483 20.540 Atomic orbital electron populations 1.22489 0.75988 1.05182 1.03746 1.47658 1.09242 1.04470 1.70594 1.23151 1.01904 0.86177 0.95399 1.23090 0.77869 0.93039 0.87895 1.92994 1.76648 1.67505 1.83473 1.92961 1.47115 1.96088 1.83406 1.20174 0.87227 0.85758 0.77875 1.90748 1.14083 1.87388 1.48651 1.20210 0.87704 0.85646 0.78273 1.90611 1.13601 1.86794 1.50289 1.45813 1.11369 1.05094 1.69481 1.19961 0.95487 0.82936 0.92063 0.90581 1.19150 0.93651 0.92021 0.95264 1.21359 1.30864 1.09287 0.95575 0.92833 1.25772 0.95585 0.94784 1.02574 1.70059 1.34540 1.13676 1.38154 0.85647 0.78356 0.77801 0.80144 1.19466 1.20667 1.19712 1.20360 0.95251 0.99474 0.95090 1.21042 0.99111 1.00820 0.93451 1.21399 0.97705 0.99401 0.95907 1.21481 0.93602 0.98840 1.00400 1.21423 1.00852 0.99688 0.91811 1.21185 0.95411 0.99567 0.98099 0.91429 0.88389 0.89582 0.82573 0.86576 0.81271 0.75361 0.97441 0.96824 0.92665 0.87275 0.84090 0.83001 0.83326 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.45 9.30 127.77 1.19 2.64 16 2 N -0.59 -14.42 2.79 -848.35 -2.37 -16.79 16 3 C 0.06 0.86 5.70 86.38 0.49 1.36 16 4 C 0.24 3.65 5.60 71.98 0.40 4.06 16 5 F -0.22 -5.85 16.42 44.97 0.74 -5.11 16 6 F -0.21 -4.02 16.37 44.97 0.74 -3.29 16 7 C 0.51 16.93 7.28 87.27 0.64 17.57 16 8 O -0.53 -19.76 15.64 -3.26 -0.05 -19.81 16 9 C 0.50 18.86 7.73 87.27 0.67 19.53 16 10 O -0.53 -20.61 12.80 -3.24 -0.04 -20.65 16 11 N -0.67 -26.96 4.01 -447.42 -1.80 -28.76 16 12 C 0.20 8.55 2.12 44.25 0.09 8.65 16 13 H 0.08 3.44 7.44 -2.39 -0.02 3.42 16 14 C 0.04 1.87 4.50 29.85 0.13 2.00 16 15 C -0.53 -29.48 8.84 25.60 0.23 -29.25 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 17 C 0.01 0.66 5.46 84.66 0.46 1.13 16 18 N -0.92 -54.85 13.29 21.45 0.28 -54.56 16 19 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 23 C -0.10 -3.85 4.92 -19.86 -0.10 -3.95 16 24 C -0.13 -4.46 9.33 22.27 0.21 -4.25 16 25 C -0.13 -3.65 10.05 22.27 0.22 -3.43 16 26 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 27 C -0.12 -3.29 10.05 22.27 0.22 -3.06 16 28 C -0.12 -4.22 9.67 22.27 0.22 -4.01 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.50 7.39 -2.38 -0.02 1.48 16 31 H 0.09 2.39 5.35 -2.50 -0.01 2.38 16 32 H 0.16 1.00 8.07 -2.39 -0.02 0.98 16 33 H 0.12 1.89 7.37 -2.39 -0.02 1.88 16 34 H 0.17 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.41 16.87 8.09 -92.71 -0.75 16.12 16 36 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 37 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.11 3.91 7.71 -2.91 -0.02 3.89 16 40 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 41 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 42 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.12 3.98 8.04 -2.91 -0.02 3.96 16 Total: -1.00 -73.36 375.00 5.13 -68.23 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.30 Total: 28.43 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.31 Total: 6.00 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -3.88 Total: -100.11 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.09 Total: -40.46 kcal Atomic # 9 Polarization: -9.87 SS G_CDS: 1.47 Total: -8.40 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -73.36 5.13 -68.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261167026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.858 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds