Wall clock time and date at job start Sat Apr 11 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99776 * 2 1 4 4 O 1.42904 * 112.90463 * 293.28893 * 3 2 1 5 5 C 1.42903 * 113.99772 * 310.76100 * 4 3 2 6 6 C 1.53778 * 113.61611 * 64.53506 * 3 2 1 7 7 C 1.53785 * 87.07524 * 89.11729 * 6 3 2 8 8 C 1.52999 * 113.61128 * 139.98457 * 7 6 3 9 9 N 1.46504 * 109.47417 * 174.99922 * 8 7 6 10 10 C 1.34771 * 120.00185 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00136 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99625 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99886 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47247 * 34.98949 * 13 12 10 15 15 C 1.50691 * 109.47415 * 154.99456 * 13 12 10 16 16 H 1.08002 * 120.00184 * 359.97438 * 15 13 12 17 17 C 1.37881 * 120.00155 * 179.97438 * 15 13 12 18 18 N 1.31515 * 120.00154 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00028 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47104 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47214 * 120.00092 * 19 17 15 22 22 H 1.48501 * 109.47048 * 239.99927 * 19 17 15 23 23 C 1.53003 * 109.47009 * 274.99629 * 13 12 10 24 24 F 1.39898 * 109.46818 * 299.99858 * 23 13 12 25 25 F 1.39900 * 109.47130 * 59.99942 * 23 13 12 26 26 F 1.39894 * 109.47154 * 179.97438 * 23 13 12 27 27 C 1.53772 * 87.08320 * 25.43249 * 7 6 3 28 28 H 1.08998 * 109.47196 * 54.52417 * 1 2 3 29 29 H 1.09007 * 109.46675 * 174.52511 * 1 2 3 30 30 H 1.09003 * 109.47042 * 294.51833 * 1 2 3 31 31 H 1.09000 * 109.46903 * 185.48394 * 5 4 3 32 32 H 1.08991 * 109.47601 * 305.48370 * 5 4 3 33 33 H 1.09001 * 109.46984 * 65.48428 * 5 4 3 34 34 H 1.09003 * 113.61491 * 334.57208 * 6 3 2 35 35 H 1.08990 * 113.61591 * 203.66349 * 6 3 2 36 36 H 1.09002 * 113.61355 * 270.79530 * 7 6 3 37 37 H 1.09004 * 109.47640 * 54.99752 * 8 7 6 38 38 H 1.09008 * 109.47234 * 294.99617 * 8 7 6 39 39 H 0.97006 * 119.99480 * 359.97438 * 9 8 7 40 40 H 0.96999 * 120.00473 * 359.97438 * 12 10 9 41 41 H 0.96992 * 120.00367 * 180.02562 * 18 17 15 42 42 H 1.09002 * 113.61552 * 89.11550 * 27 7 6 43 43 H 1.09003 * 113.61863 * 220.01676 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.7610 2.0253 -1.2091 5 6 2.0502 1.2847 -2.3965 6 6 1.7073 2.1147 1.2721 7 6 2.9769 1.4914 1.8760 8 6 3.8054 2.4727 2.7075 9 7 4.9219 1.7605 3.3342 10 6 5.7916 2.4276 4.1183 11 8 5.6500 3.6206 4.3053 12 7 6.8189 1.7724 4.6944 13 6 7.7641 2.4974 5.5472 14 1 7.2346 3.2761 6.0963 15 6 8.3990 1.5390 6.5215 16 1 8.1255 0.4943 6.5072 17 6 9.3290 1.9957 7.4311 18 7 9.6617 3.2680 7.4489 19 14 10.1165 0.8075 8.6383 20 1 9.5750 -0.5571 8.4144 21 1 11.5873 0.7966 8.4341 22 1 9.8128 1.2384 10.0266 23 6 8.8499 3.1350 4.6780 24 9 9.5295 2.1356 3.9733 25 9 8.2605 4.0248 3.7735 26 9 9.7521 3.8278 5.4922 27 6 3.4852 1.3231 0.4345 28 1 -0.3633 0.5964 -0.8369 29 1 -0.3633 -1.0231 -0.0981 30 1 -0.3633 0.4265 0.9350 31 1 1.9284 1.9304 -3.2662 32 1 3.0763 0.9195 -2.3561 33 1 1.3664 0.4393 -2.4730 34 1 0.7896 1.8101 1.7752 35 1 1.7755 3.1932 1.1301 36 1 2.7976 0.5472 2.3903 37 1 3.1769 2.9150 3.4805 38 1 4.1937 3.2595 2.0607 39 1 5.0350 0.8087 3.1848 40 1 6.9321 0.8207 4.5450 41 1 10.3162 3.5893 8.0886 42 1 4.0394 2.1853 0.0635 43 1 4.0028 0.3796 0.2613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263650461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:09 Heat of formation + Delta-G solvation = -254.960604 kcal Electronic energy + Delta-G solvation = -30879.667462 eV Core-core repulsion = 25932.126353 eV Total energy + Delta-G solvation = -4947.541109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.38062 -48.01390 -47.69521 -41.51581 -40.74337 -37.71850 -37.03934 -36.45489 -35.05564 -34.34276 -30.55957 -28.72355 -28.10797 -27.17480 -26.53247 -26.40538 -23.69917 -22.84236 -21.88177 -20.77905 -19.85025 -18.91738 -18.79475 -18.60091 -18.45472 -17.81398 -17.16091 -17.00391 -16.74716 -16.61097 -16.28795 -15.75099 -15.52178 -15.41572 -15.09397 -14.92271 -14.75336 -14.68322 -14.49722 -14.42287 -14.26389 -13.99922 -13.88295 -13.84739 -13.40544 -13.14075 -13.02972 -12.80948 -12.69341 -12.63671 -12.39888 -12.18543 -12.01994 -11.93160 -11.54527 -11.52417 -11.23662 -10.92872 -10.71678 -10.67935 -10.27531 -9.72874 -8.19212 -6.49772 1.47561 1.48693 1.61196 1.76197 2.18006 2.38635 2.44885 2.59564 2.65194 2.96729 3.27780 3.42498 3.55691 3.70124 3.82835 3.91471 3.98217 4.22888 4.27990 4.43458 4.44777 4.50330 4.53255 4.63784 4.68195 4.71780 4.75046 4.81932 4.86961 4.92551 4.98701 5.02281 5.26872 5.46834 5.53158 5.55262 5.59710 5.68096 6.17227 6.44785 6.56000 7.18978 7.24472 7.69536 8.73880 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.002405 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.778646 B =11638.532630 C =12134.756716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.386 6.386 3 C 0.234 3.766 4 O -0.401 6.401 5 C 0.030 3.970 6 C -0.130 4.130 7 C -0.099 4.099 8 C 0.154 3.846 9 N -0.729 5.729 10 C 0.693 3.307 11 O -0.630 6.630 12 N -0.720 5.720 13 C 0.271 3.729 14 H 0.046 0.954 15 C -0.559 4.559 16 H 0.093 0.907 17 C 0.014 3.986 18 N -0.875 5.875 19 Si 0.984 3.016 20 H -0.254 1.254 21 H -0.282 1.282 22 H -0.278 1.278 23 C 0.412 3.588 24 F -0.203 7.203 25 F -0.219 7.219 26 F -0.151 7.151 27 C -0.135 4.135 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.411 0.589 40 H 0.410 0.590 41 H 0.268 0.732 42 H 0.100 0.900 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.265 -9.093 -14.433 23.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.306 6.306 3 C 0.156 3.844 4 O -0.323 6.323 5 C -0.066 4.066 6 C -0.168 4.168 7 C -0.117 4.117 8 C 0.030 3.970 9 N -0.386 5.386 10 C 0.393 3.607 11 O -0.511 6.511 12 N -0.374 5.374 13 C 0.163 3.837 14 H 0.063 0.937 15 C -0.596 4.596 16 H 0.111 0.889 17 C -0.192 4.192 18 N -0.510 5.510 19 Si 0.808 3.192 20 H -0.178 1.178 21 H -0.208 1.208 22 H -0.204 1.204 23 C 0.356 3.644 24 F -0.185 7.185 25 F -0.201 7.201 26 F -0.133 7.133 27 C -0.173 4.173 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.247 0.753 40 H 0.246 0.754 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.242 -7.828 -14.204 22.953 hybrid contribution 0.864 -0.702 0.125 1.120 sum -15.378 -8.530 -14.078 22.527 Atomic orbital electron populations 1.22928 0.79249 1.03916 1.01254 1.87999 1.21918 1.26598 1.94121 1.23950 0.94416 0.81238 0.84764 1.88044 1.88085 1.41165 1.14965 1.22739 1.00063 0.97135 0.86667 1.23519 0.98740 1.01530 0.93005 1.22435 0.95380 0.99676 0.94253 1.21142 0.86124 0.94162 0.95588 1.44881 1.29110 1.12811 1.51791 1.16278 0.80223 0.84981 0.79193 1.90887 1.77163 1.15379 1.67675 1.44984 1.27671 1.12773 1.52018 1.19162 0.84063 0.94284 0.86229 0.93660 1.21262 1.25912 0.95792 1.16643 0.88891 1.26015 0.96446 0.97426 0.99276 1.70545 1.31310 1.15286 1.33828 0.85098 0.77630 0.78915 0.77577 1.17776 1.20771 1.20384 1.23373 0.85749 0.76383 0.78935 1.92979 1.82535 1.62239 1.80779 1.93062 1.84451 1.71327 1.71286 1.93370 1.69579 1.80289 1.70034 1.23615 0.94418 1.04026 0.95227 0.93549 0.87828 0.92588 0.88367 0.93669 0.93397 0.88517 0.87914 0.86434 0.92008 0.92687 0.75267 0.75354 0.92201 0.88205 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.56 113.37 1.20 1.46 16 2 O -0.39 -6.60 9.79 -126.63 -1.24 -7.84 16 3 C 0.23 4.08 1.03 31.12 0.03 4.12 16 4 O -0.40 -7.75 10.31 -126.63 -1.31 -9.06 16 5 C 0.03 0.44 10.65 113.37 1.21 1.64 16 6 C -0.13 -2.04 7.03 31.12 0.22 -1.83 16 7 C -0.10 -1.65 3.69 -10.27 -0.04 -1.68 16 8 C 0.15 3.67 5.51 86.38 0.48 4.14 16 9 N -0.73 -19.97 5.56 -478.52 -2.66 -22.63 16 10 C 0.69 27.57 8.10 179.06 1.45 29.02 16 11 O -0.63 -31.12 14.91 -3.98 -0.06 -31.18 16 12 N -0.72 -29.19 4.99 -461.41 -2.30 -31.49 16 13 C 0.27 13.71 2.21 44.24 0.10 13.81 16 14 H 0.05 2.66 7.58 -2.39 -0.02 2.64 16 15 C -0.56 -28.20 8.46 25.60 0.22 -27.99 16 16 H 0.09 4.29 7.74 -2.91 -0.02 4.27 16 17 C 0.01 0.70 5.20 84.66 0.44 1.14 16 18 N -0.88 -48.82 9.50 21.45 0.20 -48.62 16 19 Si 0.98 40.46 29.54 68.60 2.03 42.48 16 20 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 23 C 0.41 21.68 2.81 71.98 0.20 21.88 16 24 F -0.20 -10.05 16.94 44.97 0.76 -9.29 16 25 F -0.22 -11.61 15.67 44.97 0.70 -10.90 16 26 F -0.15 -8.66 12.91 44.97 0.58 -8.08 16 27 C -0.14 -2.34 7.12 31.12 0.22 -2.12 16 28 H 0.05 0.57 7.77 -2.39 -0.02 0.55 16 29 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.57 6.82 -2.39 -0.02 0.56 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.65 8.01 -2.39 -0.02 0.63 16 33 H 0.05 0.65 7.58 -2.39 -0.02 0.63 16 34 H 0.10 1.26 6.75 -2.39 -0.02 1.24 16 35 H 0.10 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.05 1.48 7.84 -2.38 -0.02 1.46 16 39 H 0.41 8.40 8.49 -92.70 -0.79 7.61 16 40 H 0.41 13.70 8.55 -92.71 -0.79 12.90 16 41 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 42 H 0.10 1.88 7.90 -2.39 -0.02 1.86 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -69.42 365.96 1.92 -67.50 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.51 Total: 25.51 kcal Atomic # 6 Polarization: 37.86 SS G_CDS: 5.72 Total: 43.59 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -4.76 Total: -102.74 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -2.60 Total: -48.07 kcal Atomic # 9 Polarization: -30.32 SS G_CDS: 2.05 Total: -28.27 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -69.42 1.92 -67.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263650461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.456 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds