Wall clock time and date at job start Sat Apr 11 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.47049 * 2 1 4 4 C 1.46893 * 111.00305 * 288.08229 * 3 2 1 5 5 C 1.52999 * 109.47426 * 160.35240 * 4 3 2 6 6 N 1.46495 * 109.47556 * 184.80112 * 5 4 3 7 7 C 1.34776 * 120.00042 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00166 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99808 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47055 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00083 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00210 * 359.97438 * 11 10 9 13 13 C 1.38805 * 120.00023 * 179.97438 * 11 10 9 14 14 N 1.31629 * 119.99825 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99975 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47305 * 60.00182 * 15 13 11 17 17 H 1.48493 * 109.47208 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47255 * 300.00079 * 15 13 11 19 19 C 1.46902 * 110.99533 * 164.12797 * 3 2 1 20 20 C 1.50704 * 109.47415 * 293.95582 * 19 3 2 21 21 C 1.38243 * 119.97267 * 270.32615 * 20 19 3 22 22 C 1.38194 * 120.02503 * 180.27483 * 21 20 19 23 23 C 1.38461 * 119.97240 * 359.42417 * 22 21 20 24 24 F 1.35102 * 120.02807 * 180.30183 * 23 22 21 25 25 C 1.38458 * 119.94958 * 0.27053 * 23 22 21 26 26 C 1.38201 * 119.97375 * 0.02562 * 25 23 22 27 27 H 1.09007 * 109.47030 * 59.30397 * 1 2 3 28 28 H 1.08997 * 109.47251 * 179.30806 * 1 2 3 29 29 H 1.08999 * 109.46864 * 299.31282 * 1 2 3 30 30 H 1.09009 * 109.46612 * 240.00456 * 2 1 3 31 31 H 1.08993 * 109.47262 * 120.00850 * 2 1 3 32 32 H 1.09006 * 109.47232 * 280.34799 * 4 3 2 33 33 H 1.09000 * 109.47132 * 40.34799 * 4 3 2 34 34 H 1.08999 * 109.46806 * 304.80116 * 5 4 3 35 35 H 1.09000 * 109.46829 * 64.79466 * 5 4 3 36 36 H 0.96999 * 119.99681 * 359.97438 * 6 5 4 37 37 H 1.09006 * 109.47059 * 299.99583 * 9 7 6 38 38 H 1.09000 * 109.47590 * 59.99989 * 9 7 6 39 39 H 0.96998 * 119.99530 * 179.97438 * 14 13 11 40 40 H 1.09004 * 109.46933 * 173.95923 * 19 3 2 41 41 H 1.09002 * 109.47379 * 53.95730 * 19 3 2 42 42 H 1.08002 * 119.99267 * 359.97438 * 21 20 19 43 43 H 1.07997 * 120.01892 * 179.69714 * 22 21 20 44 44 H 1.07996 * 120.01491 * 180.02562 * 25 23 22 45 45 H 1.08000 * 119.98494 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7939 2.0233 -1.3036 5 6 1.8460 3.5439 -1.1429 6 7 1.5079 4.1816 -2.4177 7 6 1.4893 5.5258 -2.5147 8 8 1.7529 6.2074 -1.5468 9 6 1.1421 6.1818 -3.8262 10 16 1.2036 7.9807 -3.6360 11 6 0.7683 8.4763 -5.2699 12 1 0.5623 7.7306 -6.0235 13 6 0.6902 9.8250 -5.5884 14 7 0.9418 10.7338 -4.6700 15 14 0.2295 10.3504 -7.3208 16 1 -1.1181 9.8241 -7.6557 17 1 0.2164 11.8330 -7.4014 18 1 1.2245 9.8116 -8.2826 19 6 3.4389 1.4415 0.3751 20 6 3.5974 1.0052 1.8088 21 6 3.5229 1.9375 2.8268 22 6 3.6738 1.5394 4.1415 23 6 3.8877 0.2044 4.4398 24 9 4.0292 -0.1869 5.7252 25 6 3.9558 -0.7295 3.4199 26 6 3.8108 -0.3281 2.1054 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0124 29 1 -0.3633 0.5031 0.8961 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 2.5673 1.7052 -2.0028 33 1 0.8159 1.7316 -1.6864 34 1 1.1308 3.8534 -0.3808 35 1 2.8499 3.8432 -0.8418 36 1 1.2975 3.6365 -3.1919 37 1 1.8580 5.8727 -4.5879 38 1 0.1385 5.8821 -4.1280 39 1 0.8876 11.6763 -4.8928 40 1 3.8037 2.4626 0.2637 41 1 4.0125 0.7781 -0.2721 42 1 3.3516 2.9782 2.5943 43 1 3.6204 2.2686 4.9364 44 1 4.1222 -1.7711 3.6513 45 1 3.8635 -1.0564 1.3097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266378159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:21 Heat of formation + Delta-G solvation = -56.854793 kcal Electronic energy + Delta-G solvation = -25641.578988 eV Core-core repulsion = 21699.610791 eV Total energy + Delta-G solvation = -3941.968196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.22508 -40.01353 -39.15562 -37.83903 -34.59672 -32.42833 -32.35822 -31.59572 -31.18398 -29.57652 -27.69208 -25.56578 -25.35883 -23.61028 -22.87622 -22.08039 -20.91961 -20.26004 -18.02203 -17.85273 -16.82836 -16.70578 -16.43792 -16.07796 -15.95110 -15.66759 -15.28524 -14.97841 -14.80605 -14.61921 -14.26660 -14.03463 -13.98982 -13.82873 -13.68474 -13.17986 -13.04577 -12.64590 -12.51604 -12.33213 -12.15640 -12.11636 -11.76898 -11.72188 -11.39592 -11.26840 -11.06621 -11.04555 -11.03351 -10.76904 -9.82616 -9.47506 -9.41445 -9.06366 -9.03249 -8.87443 -8.71640 -8.23857 -6.49910 -6.21455 -3.92098 0.71547 0.84985 2.89644 3.10804 3.13503 3.23341 3.27481 3.30467 3.56383 3.89268 3.94569 4.20583 4.28748 4.29726 4.51168 4.57443 4.69678 4.72903 4.84730 4.87207 4.97280 5.12197 5.13549 5.15655 5.17414 5.22530 5.31638 5.44368 5.52302 5.59695 5.63002 5.64202 5.73232 5.74950 5.85198 5.89668 5.90950 5.96155 6.13112 6.13630 6.48431 6.54245 6.64694 6.69657 7.59206 7.69771 8.35001 8.61783 9.23642 10.85904 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.001694 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.049554 B =16525.935411 C =17366.079221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 N -0.529 5.529 4 C 0.043 3.957 5 C 0.126 3.874 6 N -0.740 5.740 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.089 3.911 20 C -0.086 4.086 21 C -0.066 4.066 22 C -0.153 4.153 23 C 0.096 3.904 24 F -0.142 7.142 25 C -0.156 4.156 26 C -0.087 4.087 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -27.580 12.139 30.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.254 5.254 4 C -0.085 4.085 5 C 0.001 3.999 6 N -0.395 5.395 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.038 4.038 20 C -0.087 4.087 21 C -0.084 4.084 22 C -0.171 4.171 23 C 0.076 3.924 24 F -0.121 7.121 25 C -0.175 4.175 26 C -0.106 4.106 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.596 -25.992 14.209 29.977 hybrid contribution -0.225 -1.295 -2.925 3.206 sum 4.371 -27.287 11.284 29.850 Atomic orbital electron populations 1.21795 0.94583 1.01441 1.02812 1.22229 0.96499 0.88475 1.01118 1.61856 1.16817 1.17615 1.29062 1.22311 1.02076 0.94315 0.89832 1.21161 1.01569 0.90554 0.86588 1.45921 1.73495 1.06904 1.13194 1.20277 0.76261 0.81293 0.90318 1.90706 1.46657 1.62736 1.38898 1.23532 1.04347 1.05741 0.96794 1.85403 1.90955 0.90363 1.16593 1.22830 1.54594 0.94693 0.96366 0.90984 1.24992 0.94804 0.95462 0.98317 1.70008 1.45736 1.01219 1.33296 0.86225 0.79059 0.77541 0.82671 1.19945 1.20808 1.19963 1.21148 0.88737 1.02370 0.91555 1.19789 1.00156 0.93238 0.95503 1.20986 0.96059 1.00417 0.90955 1.21212 1.03257 0.94384 0.98281 1.17762 1.02630 0.93458 0.78523 1.91502 1.93265 1.91643 1.35650 1.21087 1.04267 0.99742 0.92373 1.20911 0.98479 0.95522 0.95665 0.92537 0.92369 0.91716 0.94734 0.90103 0.93814 0.89721 0.90657 0.91849 0.76997 0.89265 0.89221 0.92124 0.89004 0.93489 0.84483 0.84601 0.84872 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.99 37.16 0.37 -0.61 16 2 C 0.04 0.29 5.52 -3.82 -0.02 0.27 16 3 N -0.53 -4.05 4.38 -236.06 -1.03 -5.08 16 4 C 0.04 0.33 4.94 -3.83 -0.02 0.32 16 5 C 0.13 1.40 5.71 -4.05 -0.02 1.38 16 6 N -0.74 -9.42 5.56 -60.30 -0.33 -9.76 16 7 C 0.53 9.76 7.85 -10.99 -0.09 9.68 16 8 O -0.52 -11.64 15.86 5.56 0.09 -11.55 16 9 C -0.15 -3.05 6.16 36.01 0.22 -2.82 16 10 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 11 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 15 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.09 0.63 4.94 -4.97 -0.02 0.61 16 20 C -0.09 -0.64 4.94 -104.62 -0.52 -1.15 16 21 C -0.07 -0.52 9.70 -39.60 -0.38 -0.90 16 22 C -0.15 -1.23 10.03 -39.52 -0.40 -1.62 16 23 C 0.10 0.82 7.30 -39.42 -0.29 0.53 16 24 F -0.14 -1.35 17.27 2.25 0.04 -1.32 16 25 C -0.16 -1.11 10.03 -39.51 -0.40 -1.50 16 26 C -0.09 -0.57 7.85 -39.59 -0.31 -0.88 16 27 H 0.06 0.38 6.52 -51.93 -0.34 0.04 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.20 8.05 -51.92 -0.42 -0.22 16 31 H 0.08 0.51 5.13 -51.93 -0.27 0.24 16 32 H 0.04 0.31 8.00 -51.93 -0.42 -0.11 16 33 H 0.08 0.62 6.23 -51.93 -0.32 0.29 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.76 6.94 -51.93 -0.36 0.40 16 36 H 0.40 3.80 8.47 -40.82 -0.35 3.45 16 37 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.09 0.70 6.65 -51.93 -0.35 0.35 16 41 H 0.05 0.29 8.06 -51.93 -0.42 -0.13 16 42 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.13 0.59 7.73 -52.49 -0.41 0.19 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -34.37 390.46 -10.10 -44.47 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.56 Total: -0.09 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.67 Total: -9.64 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.64 Total: -40.21 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.37 -10.10 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266378159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.384 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds