Wall clock time and date at job start Sat Apr 11 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.47049 * 2 1 4 4 C 1.46893 * 111.00305 * 288.08229 * 3 2 1 5 5 C 1.52999 * 109.47426 * 160.35240 * 4 3 2 6 6 N 1.46495 * 109.47556 * 184.80112 * 5 4 3 7 7 C 1.34776 * 120.00042 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00166 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99808 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47055 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00083 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00210 * 359.97438 * 11 10 9 13 13 C 1.38805 * 120.00023 * 179.97438 * 11 10 9 14 14 N 1.31629 * 119.99825 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99975 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47305 * 60.00182 * 15 13 11 17 17 H 1.48493 * 109.47208 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47255 * 300.00079 * 15 13 11 19 19 C 1.46902 * 110.99533 * 164.12797 * 3 2 1 20 20 C 1.50704 * 109.47415 * 293.95582 * 19 3 2 21 21 C 1.38243 * 119.97267 * 270.32615 * 20 19 3 22 22 C 1.38194 * 120.02503 * 180.27483 * 21 20 19 23 23 C 1.38461 * 119.97240 * 359.42417 * 22 21 20 24 24 F 1.35102 * 120.02807 * 180.30183 * 23 22 21 25 25 C 1.38458 * 119.94958 * 0.27053 * 23 22 21 26 26 C 1.38201 * 119.97375 * 0.02562 * 25 23 22 27 27 H 1.09007 * 109.47030 * 59.30397 * 1 2 3 28 28 H 1.08997 * 109.47251 * 179.30806 * 1 2 3 29 29 H 1.08999 * 109.46864 * 299.31282 * 1 2 3 30 30 H 1.09009 * 109.46612 * 240.00456 * 2 1 3 31 31 H 1.08993 * 109.47262 * 120.00850 * 2 1 3 32 32 H 1.09006 * 109.47232 * 280.34799 * 4 3 2 33 33 H 1.09000 * 109.47132 * 40.34799 * 4 3 2 34 34 H 1.08999 * 109.46806 * 304.80116 * 5 4 3 35 35 H 1.09000 * 109.46829 * 64.79466 * 5 4 3 36 36 H 0.96999 * 119.99681 * 359.97438 * 6 5 4 37 37 H 1.09006 * 109.47059 * 299.99583 * 9 7 6 38 38 H 1.09000 * 109.47590 * 59.99989 * 9 7 6 39 39 H 0.96998 * 119.99530 * 179.97438 * 14 13 11 40 40 H 1.09004 * 109.46933 * 173.95923 * 19 3 2 41 41 H 1.09002 * 109.47379 * 53.95730 * 19 3 2 42 42 H 1.08002 * 119.99267 * 359.97438 * 21 20 19 43 43 H 1.07997 * 120.01892 * 179.69714 * 22 21 20 44 44 H 1.07996 * 120.01491 * 180.02562 * 25 23 22 45 45 H 1.08000 * 119.98494 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7939 2.0233 -1.3036 5 6 1.8460 3.5439 -1.1429 6 7 1.5079 4.1816 -2.4177 7 6 1.4893 5.5258 -2.5147 8 8 1.7529 6.2074 -1.5468 9 6 1.1421 6.1818 -3.8262 10 16 1.2036 7.9807 -3.6360 11 6 0.7683 8.4763 -5.2699 12 1 0.5623 7.7306 -6.0235 13 6 0.6902 9.8250 -5.5884 14 7 0.9418 10.7338 -4.6700 15 14 0.2295 10.3504 -7.3208 16 1 -1.1181 9.8241 -7.6557 17 1 0.2164 11.8330 -7.4014 18 1 1.2245 9.8116 -8.2826 19 6 3.4389 1.4415 0.3751 20 6 3.5974 1.0052 1.8088 21 6 3.5229 1.9375 2.8268 22 6 3.6738 1.5394 4.1415 23 6 3.8877 0.2044 4.4398 24 9 4.0292 -0.1869 5.7252 25 6 3.9558 -0.7295 3.4199 26 6 3.8108 -0.3281 2.1054 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0124 29 1 -0.3633 0.5031 0.8961 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 2.5673 1.7052 -2.0028 33 1 0.8159 1.7316 -1.6864 34 1 1.1308 3.8534 -0.3808 35 1 2.8499 3.8432 -0.8418 36 1 1.2975 3.6365 -3.1919 37 1 1.8580 5.8727 -4.5879 38 1 0.1385 5.8821 -4.1280 39 1 0.8876 11.6763 -4.8928 40 1 3.8037 2.4626 0.2637 41 1 4.0125 0.7781 -0.2721 42 1 3.3516 2.9782 2.5943 43 1 3.6204 2.2686 4.9364 44 1 4.1222 -1.7711 3.6513 45 1 3.8635 -1.0564 1.3097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266378159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:21 Heat of formation + Delta-G solvation = -79.438662 kcal Electronic energy + Delta-G solvation = -25642.558298 eV Core-core repulsion = 21699.610791 eV Total energy + Delta-G solvation = -3942.947506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.90062 -40.75701 -40.35568 -38.52330 -35.77816 -34.56998 -32.90183 -32.31919 -31.99468 -30.70979 -28.64998 -27.62171 -26.06870 -24.22348 -23.59703 -22.68496 -21.85839 -21.29508 -19.81062 -18.63521 -17.83391 -17.55368 -17.31811 -17.12646 -16.86429 -16.65801 -16.57019 -16.28545 -15.95986 -15.55979 -15.23030 -14.99341 -14.77762 -14.61920 -14.55134 -14.39068 -14.23597 -13.82039 -13.48068 -13.20828 -13.15527 -12.86367 -12.82712 -12.78011 -12.60926 -12.57437 -12.30181 -12.04933 -11.86652 -11.73469 -11.63798 -11.11566 -10.95819 -10.26008 -10.08971 -10.03300 -9.62307 -9.26494 -8.65282 -8.33134 -6.11263 0.12088 0.28973 1.28024 1.45006 1.48017 1.57526 1.63959 2.18727 2.29266 2.56912 3.00894 3.16306 3.30170 3.36237 3.71260 3.76541 3.91084 3.98824 4.00398 4.09295 4.19933 4.25180 4.33185 4.34106 4.45435 4.49213 4.53355 4.64105 4.68261 4.75887 4.84709 4.93627 4.98938 5.04393 5.07707 5.16252 5.17680 5.27667 5.39109 5.42968 5.45300 5.57115 5.91894 6.05841 6.11606 6.20985 6.53364 7.07994 7.27546 8.75788 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.001694 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.049554 B =16525.935411 C =17366.079221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 N -0.542 5.542 4 C 0.055 3.945 5 C 0.128 3.872 6 N -0.711 5.711 7 C 0.534 3.466 8 O -0.566 6.566 9 C -0.129 4.129 10 S -0.154 6.154 11 C -0.547 4.547 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.262 1.262 19 C 0.091 3.909 20 C -0.089 4.089 21 C -0.079 4.079 22 C -0.162 4.162 23 C 0.075 3.925 24 F -0.152 7.152 25 C -0.155 4.155 26 C -0.082 4.082 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.417 0.583 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.271 0.729 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.152 0.848 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.165 -30.417 9.842 32.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 N -0.268 5.268 4 C -0.073 4.073 5 C 0.004 3.996 6 N -0.366 5.366 7 C 0.319 3.681 8 O -0.445 6.445 9 C -0.280 4.280 10 S 0.073 5.927 11 C -0.695 4.695 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.186 1.186 19 C -0.036 4.036 20 C -0.089 4.089 21 C -0.097 4.097 22 C -0.181 4.181 23 C 0.055 3.945 24 F -0.131 7.131 25 C -0.173 4.173 26 C -0.100 4.100 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.254 0.746 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.152 0.848 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.354 -28.904 11.897 31.558 hybrid contribution -0.144 -0.541 -2.139 2.211 sum 4.209 -29.445 9.758 31.304 Atomic orbital electron populations 1.21790 0.94821 1.02026 1.01905 1.22250 0.96234 0.87666 1.01941 1.61774 1.17277 1.18658 1.29041 1.22170 1.03345 0.91394 0.90420 1.21226 1.00434 0.92946 0.85007 1.45616 1.71231 1.05050 1.14710 1.20049 0.76131 0.82855 0.89026 1.90697 1.49320 1.64286 1.40166 1.23371 1.06305 0.99905 0.98445 1.85605 1.91368 0.97784 1.17912 1.23182 1.54431 0.95438 0.96405 0.89803 1.26138 0.94430 0.95450 1.03197 1.70182 1.47065 1.01609 1.35929 0.85002 0.79300 0.77095 0.76586 1.18640 1.20499 1.18622 1.21130 0.88669 1.02236 0.91572 1.19917 0.99871 0.93645 0.95509 1.21067 0.96771 1.00666 0.91240 1.21320 1.03485 0.94642 0.98612 1.18018 1.03861 0.94032 0.78556 1.91472 1.93502 1.91724 1.36391 1.21343 1.03346 1.00390 0.92240 1.21158 0.97336 0.95507 0.96036 0.92642 0.91105 0.93368 0.93222 0.89834 0.92065 0.88625 0.92614 0.92637 0.74597 0.87053 0.87124 0.92027 0.89986 0.91829 0.84771 0.84233 0.83069 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.99 71.98 0.72 -0.90 16 2 C 0.05 0.46 5.52 86.30 0.48 0.94 16 3 N -0.54 -7.14 4.38 -900.77 -3.95 -11.08 16 4 C 0.05 0.70 4.94 86.30 0.43 1.13 16 5 C 0.13 2.70 5.71 86.38 0.49 3.19 16 6 N -0.71 -16.69 5.56 -463.08 -2.57 -19.26 16 7 C 0.53 19.21 7.85 87.66 0.69 19.90 16 8 O -0.57 -26.15 15.86 -3.02 -0.05 -26.20 16 9 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 10 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 11 C -0.55 -30.99 9.50 67.96 0.65 -30.35 16 12 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 13 C 0.01 0.71 5.49 84.86 0.47 1.18 16 14 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 15 Si 1.00 43.25 29.55 68.60 2.03 45.27 16 16 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 C 0.09 1.12 4.94 85.56 0.42 1.54 16 20 C -0.09 -1.20 4.94 -19.86 -0.10 -1.29 16 21 C -0.08 -1.26 9.70 22.26 0.22 -1.04 16 22 C -0.16 -2.67 10.03 22.31 0.22 -2.45 16 23 C 0.07 1.26 7.30 22.38 0.16 1.42 16 24 F -0.15 -2.93 17.27 44.97 0.78 -2.15 16 25 C -0.15 -1.96 10.03 22.31 0.22 -1.73 16 26 C -0.08 -0.88 7.85 22.26 0.17 -0.71 16 27 H 0.05 0.61 6.52 -2.38 -0.02 0.60 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.38 8.05 -2.38 -0.02 0.36 16 31 H 0.08 0.81 5.13 -2.39 -0.01 0.80 16 32 H 0.06 0.62 8.00 -2.38 -0.02 0.60 16 33 H 0.10 1.06 6.23 -2.39 -0.01 1.05 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.29 6.94 -2.39 -0.02 1.28 16 36 H 0.42 6.55 8.47 -92.71 -0.79 5.76 16 37 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 38 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 39 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.08 1.17 6.65 -2.39 -0.02 1.16 16 41 H 0.06 0.58 8.06 -2.39 -0.02 0.56 16 42 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 43 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 44 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.15 0.85 7.73 -2.91 -0.02 0.83 16 Total: -1.00 -77.26 390.46 1.26 -76.00 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.22 Total: 16.47 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 5.68 Total: -13.71 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -6.23 Total: -86.02 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -77.26 1.26 -76.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266378159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.438 kcal (2) G-P(sol) polarization free energy of solvation -77.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds