Wall clock time and date at job start Sat Apr 11 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46503 * 109.46849 * 184.99887 * 4 2 1 6 6 C 1.34775 * 120.00100 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99634 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00291 * 180.02562 * 6 5 4 9 9 S 1.80994 * 109.47094 * 180.02562 * 8 6 5 10 10 C 1.76209 * 99.99965 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99602 * 0.02562 * 10 9 8 12 12 C 1.38794 * 119.99888 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00417 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99803 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46954 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46850 * 120.00004 * 14 12 10 17 17 H 1.48494 * 109.47262 * 240.00286 * 14 12 10 18 18 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 19 19 C 1.46894 * 111.00220 * 274.99988 * 18 2 1 20 20 H 1.09003 * 109.46882 * 35.00199 * 19 18 2 21 21 C 1.52996 * 109.47341 * 275.00061 * 19 18 2 22 22 C 1.50701 * 109.47286 * 155.00073 * 19 18 2 23 23 C 1.38215 * 120.01171 * 24.99720 * 22 19 18 24 24 C 1.38225 * 120.02303 * 179.97438 * 23 22 19 25 25 C 1.38259 * 120.05601 * 0.02562 * 24 23 22 26 26 C 1.38178 * 120.02577 * 0.02562 * 25 24 23 27 27 C 1.38438 * 120.00985 * 204.72735 * 22 19 18 28 28 F 1.35098 * 120.03216 * 359.97438 * 27 22 19 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 33 33 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 34 34 H 0.97000 * 120.00112 * 0.02562 * 5 4 2 35 35 H 1.09006 * 109.46618 * 300.00320 * 8 6 5 36 36 H 1.08993 * 109.47048 * 59.99673 * 8 6 5 37 37 H 0.97002 * 120.00247 * 179.97438 * 13 12 10 38 38 H 1.00900 * 110.99934 * 38.95495 * 18 2 1 39 39 H 1.09003 * 109.47245 * 299.99916 * 21 19 18 40 40 H 1.09001 * 109.47260 * 59.99484 * 21 19 18 41 41 H 1.09003 * 109.47483 * 179.97438 * 21 19 18 42 42 H 1.07997 * 119.98848 * 0.02562 * 23 22 19 43 43 H 1.08003 * 119.97328 * 180.02562 * 24 23 22 44 44 H 1.08006 * 119.99435 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.01623 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1729 -1.4291 -2.1908 7 8 3.5698 -1.8841 -3.1395 8 6 5.6748 -1.5378 -2.1302 9 16 6.2781 -2.3908 -3.6082 10 6 8.0099 -2.3779 -3.2834 11 1 8.3861 -1.9254 -2.3778 12 6 8.8904 -2.9501 -4.1910 13 7 8.4319 -3.5019 -5.2945 14 14 10.7264 -2.9370 -3.8464 15 1 10.9816 -2.2619 -2.5485 16 1 11.2283 -4.3332 -3.7847 17 1 11.4285 -2.2060 -4.9315 18 7 2.0197 -0.6925 1.1994 19 6 2.0825 0.2225 2.3468 20 1 1.2576 0.9328 2.2907 21 6 3.4111 0.9808 2.3224 22 6 1.9787 -0.5677 3.6258 23 6 2.3588 -1.8964 3.6503 24 6 2.2642 -2.6213 4.8235 25 6 1.7889 -2.0186 5.9734 26 6 1.4073 -0.6907 5.9511 27 6 1.5079 0.0384 4.7780 28 9 1.1417 1.3387 4.7567 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6053 -1.7197 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 3.9823 -0.4628 -0.4317 35 1 6.1097 -0.5393 -2.0844 36 1 5.9628 -2.1005 -1.2424 37 1 9.0473 -3.9015 -5.9290 38 1 1.4496 -1.4979 1.4100 39 1 4.2360 0.2705 2.3785 40 1 3.4862 1.5524 1.3973 41 1 3.4575 1.6602 3.1736 42 1 2.7306 -2.3681 2.7528 43 1 2.5618 -3.6593 4.8418 44 1 1.7150 -2.5861 6.8894 45 1 1.0357 -0.2203 6.8494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266924141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:33 Heat of formation + Delta-G solvation = -64.113027 kcal Electronic energy + Delta-G solvation = -26440.685973 eV Core-core repulsion = 22498.403036 eV Total energy + Delta-G solvation = -3942.282937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.28508 -39.94741 -39.07892 -37.67805 -34.69795 -32.81478 -32.38588 -30.99563 -30.10701 -29.34355 -28.56334 -25.93502 -25.32806 -24.12682 -23.10786 -21.31961 -20.75762 -20.10521 -18.11912 -17.73616 -17.04953 -16.75888 -16.11636 -16.03513 -15.81485 -15.72002 -15.14261 -14.77017 -14.70271 -14.60807 -14.30300 -13.92148 -13.56767 -13.47937 -13.27779 -12.96208 -12.84158 -12.79957 -12.55651 -12.48861 -12.38226 -12.15149 -11.92525 -11.70731 -11.58122 -11.12324 -11.07066 -11.04020 -10.97224 -10.71795 -9.75785 -9.38884 -9.29022 -9.08741 -9.03719 -8.83980 -8.68014 -8.16780 -6.44330 -6.17746 -3.87350 0.72223 0.79858 3.12926 3.16902 3.23338 3.24804 3.31517 3.37507 3.58300 3.84773 3.90885 4.11134 4.24624 4.39929 4.56580 4.57465 4.71038 4.84766 4.87215 4.93613 4.99543 5.04984 5.17375 5.26640 5.29246 5.37083 5.44462 5.49178 5.56429 5.61631 5.67992 5.69319 5.74162 5.79204 5.92711 5.94275 5.96813 5.99757 6.01508 6.23343 6.47216 6.62498 6.79156 6.99685 7.64041 7.93450 8.39734 8.77538 9.27759 10.89728 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.002232 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.453306 B =12540.351016 C =13681.258036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.071 3.929 3 H 0.086 0.914 4 C 0.135 3.865 5 N -0.725 5.725 6 C 0.530 3.470 7 O -0.525 6.525 8 C -0.151 4.151 9 S -0.063 6.063 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.676 5.676 19 C 0.126 3.874 20 H 0.058 0.942 21 C -0.138 4.138 22 C -0.122 4.122 23 C -0.079 4.079 24 C -0.128 4.128 25 C -0.094 4.094 26 C -0.156 4.156 27 C 0.100 3.900 28 F -0.139 7.139 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.403 0.597 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.267 0.733 38 H 0.347 0.653 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.145 0.855 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.215 7.674 23.777 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.039 4.039 3 H 0.105 0.895 4 C 0.010 3.990 5 N -0.379 5.379 6 C 0.315 3.685 7 O -0.400 6.400 8 C -0.302 4.302 9 S 0.164 5.836 10 C -0.681 4.681 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.504 5.504 14 Si 0.744 3.256 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.308 5.308 19 C 0.017 3.983 20 H 0.076 0.924 21 C -0.196 4.196 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.146 4.146 25 C -0.112 4.112 26 C -0.175 4.175 27 C 0.081 3.919 28 F -0.118 7.118 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.237 0.763 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.167 0.833 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.163 0.837 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.538 6.960 21.855 28.873 hybrid contribution 1.037 1.023 2.022 2.492 sum -16.501 7.983 23.877 30.102 Atomic orbital electron populations 1.22413 0.96079 1.02762 1.02677 1.21885 0.93344 0.98548 0.90167 0.89539 1.21210 0.81411 1.00516 0.95851 1.45789 1.06679 1.61351 1.24073 1.20275 0.89422 0.76949 0.81810 1.90691 1.69912 1.46490 1.32919 1.23503 0.93868 1.05442 1.07361 1.85380 1.04491 1.73228 1.20502 1.22914 0.91612 1.43998 1.09571 0.90926 1.24992 0.99539 0.94631 0.94504 1.70032 1.35226 1.35675 1.09429 0.86126 0.83099 0.77949 0.78376 1.19620 1.20611 1.20613 1.60701 1.57860 1.09341 1.02940 1.20320 0.98732 0.92948 0.86303 0.92440 1.21820 0.96181 0.99775 1.01853 1.20010 1.02178 0.95595 0.94505 1.21090 0.96942 0.92494 0.99139 1.21307 0.99926 1.00693 0.92677 1.21059 0.97436 0.93861 0.98846 1.21134 1.03759 0.95383 0.97175 1.17555 1.00853 0.78774 0.94761 1.91490 1.89320 1.33822 1.97131 0.91318 0.91901 0.92434 0.91804 0.91437 0.76263 0.89463 0.89316 0.92303 0.83281 0.91276 0.91899 0.92421 0.83707 0.85109 0.85095 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.15 37.16 0.34 -0.87 16 2 C 0.07 0.56 2.56 -67.71 -0.17 0.39 16 3 H 0.09 0.68 7.11 -51.93 -0.37 0.31 16 4 C 0.14 1.53 5.37 -4.04 -0.02 1.51 16 5 N -0.72 -9.83 5.39 -60.29 -0.32 -10.15 16 6 C 0.53 10.06 7.85 -10.99 -0.09 9.98 16 7 O -0.52 -12.12 15.86 5.56 0.09 -12.04 16 8 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 9 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 10 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 14 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 N -0.68 -5.11 4.76 -100.96 -0.48 -5.59 16 19 C 0.13 0.96 2.41 -68.87 -0.17 0.80 16 20 H 0.06 0.46 6.77 -51.93 -0.35 0.11 16 21 C -0.14 -1.09 9.38 37.16 0.35 -0.74 16 22 C -0.12 -0.97 4.93 -104.56 -0.52 -1.48 16 23 C -0.08 -0.58 8.86 -39.59 -0.35 -0.93 16 24 C -0.13 -0.83 10.04 -39.58 -0.40 -1.23 16 25 C -0.09 -0.57 10.04 -39.60 -0.40 -0.97 16 26 C -0.16 -1.09 10.03 -39.51 -0.40 -1.49 16 27 C 0.10 0.85 7.24 -39.41 -0.29 0.56 16 28 F -0.14 -1.31 16.57 2.25 0.04 -1.27 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.06 0.37 7.43 -51.93 -0.39 -0.01 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.40 4.65 8.14 -40.82 -0.33 4.32 16 35 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 36 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.35 2.51 7.00 -39.29 -0.28 2.24 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.48 7.43 -51.93 -0.39 0.09 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.15 1.04 6.97 -52.49 -0.37 0.67 16 43 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 44 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 45 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -34.35 392.52 -9.61 -43.95 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.66 Total: 2.64 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -1.68 Total: -10.42 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.07 Total: -41.41 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.35 -9.61 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266924141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.159 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds