Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20826 * 119.99579 * 2 1 4 4 O 1.34223 * 120.00081 * 179.97438 * 2 1 3 5 5 C 1.45197 * 117.00030 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47267 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99890 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99887 * 179.97438 * 6 5 4 9 9 C 1.47687 * 134.45496 * 179.97438 * 8 6 5 10 10 C 1.53381 * 85.96384 * 155.72366 * 9 8 6 11 11 C 1.47686 * 134.45646 * 359.97311 * 8 6 5 12 12 C 1.52550 * 113.84445 * 138.01511 * 10 9 8 13 13 N 1.46276 * 109.56958 * 176.53357 * 12 10 9 14 14 C 1.46494 * 118.71725 * 163.64906 * 13 12 10 15 15 C 1.53003 * 109.46742 * 90.00506 * 14 13 12 16 16 C 1.50708 * 109.46821 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99902 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99830 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00153 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46943 * 90.00376 * 20 18 16 22 22 H 1.48497 * 109.47404 * 210.00281 * 20 18 16 23 23 H 1.48503 * 109.47073 * 330.00974 * 20 18 16 24 24 C 1.33720 * 122.56653 * 343.93868 * 13 12 10 25 25 O 1.21280 * 118.38380 * 183.21690 * 24 13 12 26 26 C 1.50173 * 123.23659 * 3.22694 * 24 13 12 27 27 O 1.42680 * 113.80095 * 268.70374 * 10 9 8 28 28 H 1.08998 * 109.47396 * 270.00380 * 1 2 3 29 29 H 1.09001 * 109.47681 * 30.00467 * 1 2 3 30 30 H 1.09003 * 109.47391 * 150.00131 * 1 2 3 31 31 H 1.09004 * 109.47419 * 59.99599 * 5 4 2 32 32 H 1.09001 * 109.46796 * 299.99679 * 5 4 2 33 33 H 1.09004 * 113.78731 * 41.46513 * 9 8 6 34 34 H 1.08995 * 113.79578 * 269.99297 * 9 8 6 35 35 H 1.09000 * 113.79550 * 90.01619 * 11 8 6 36 36 H 1.09000 * 113.79260 * 318.52929 * 11 8 6 37 37 H 1.09000 * 109.45660 * 56.50774 * 12 10 9 38 38 H 1.09002 * 109.44232 * 296.55182 * 12 10 9 39 39 H 1.09000 * 109.47241 * 209.99891 * 14 13 12 40 40 H 1.09000 * 109.47665 * 330.00539 * 14 13 12 41 41 H 1.08991 * 109.46998 * 299.99717 * 15 14 13 42 42 H 1.08999 * 109.47281 * 60.00367 * 15 14 13 43 43 H 0.96996 * 119.99786 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.35073 * 222.12348 * 26 24 13 45 45 H 1.09005 * 109.22331 * 102.49524 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1110 1.0464 0.0000 4 8 2.1781 -1.1624 0.0005 5 6 3.6281 -1.0864 0.0011 6 6 4.2041 -2.4789 0.0022 7 8 3.4654 -3.4408 0.0030 8 7 5.5403 -2.6555 0.0024 9 6 6.4276 -3.8360 0.0038 10 6 7.4776 -2.9126 -0.6265 11 6 6.7038 -1.7458 0.0011 12 6 8.8814 -3.0967 -0.0584 13 7 9.8183 -2.2345 -0.7785 14 6 11.1310 -1.9704 -0.1842 15 6 12.1272 -3.0314 -0.6562 16 6 13.4778 -2.7593 -0.0453 17 1 13.6120 -1.9145 0.6139 18 6 14.5418 -3.5896 -0.3273 19 7 14.3782 -4.6187 -1.1298 20 14 16.2160 -3.2521 0.4292 21 1 16.3251 -3.9644 1.7277 22 1 17.2800 -3.7314 -0.4892 23 1 16.3739 -1.7922 0.6508 24 6 9.5212 -1.6734 -1.9554 25 8 10.3761 -1.0198 -2.5146 26 6 8.1811 -1.8126 -2.6187 27 8 7.4620 -2.9122 -2.0532 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 3.9638 -0.5540 0.8910 32 1 3.9643 -0.5545 -0.8890 33 1 6.0942 -4.6374 -0.6556 34 1 6.6920 -4.1862 1.0016 35 1 7.0505 -1.4739 0.9981 36 1 6.5899 -0.8871 -0.6605 37 1 9.1853 -4.1373 -0.1717 38 1 8.8827 -2.8310 0.9988 39 1 11.4775 -0.9840 -0.4924 40 1 11.0515 -2.0045 0.9024 41 1 11.7807 -4.0177 -0.3481 42 1 12.2068 -2.9972 -1.7428 43 1 15.1267 -5.2030 -1.3279 44 1 8.3224 -1.9839 -3.6858 45 1 7.6113 -0.8949 -2.4725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270516143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = -143.859984 kcal Electronic energy + Delta-G solvation = -29677.082995 eV Core-core repulsion = 25276.216310 eV Total energy + Delta-G solvation = -4400.866685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66103 -40.93414 -39.71767 -38.46664 -36.85873 -36.36068 -35.54601 -33.13139 -31.62026 -30.87023 -30.10986 -28.71665 -27.75991 -26.67887 -25.97296 -24.62753 -22.27540 -21.71793 -20.87671 -19.73252 -18.68075 -18.22679 -17.70368 -17.68247 -17.29520 -16.75646 -16.69526 -16.23390 -15.89899 -15.73933 -15.45921 -15.09168 -14.68303 -14.47595 -14.33922 -13.77419 -13.67502 -13.48735 -13.31921 -13.26289 -13.04320 -12.93915 -12.69171 -12.63790 -12.59732 -12.28907 -11.78589 -11.39332 -11.30476 -11.26538 -11.08234 -10.95744 -10.77524 -10.60054 -10.17910 -9.96237 -9.90911 -9.45066 -9.24089 -9.06528 -8.39758 -8.24438 -6.04742 -4.08342 1.67097 1.69181 2.12508 2.59731 2.74217 2.94744 3.17369 3.29082 3.36108 3.39548 3.71384 3.85456 4.12791 4.25096 4.42402 4.52209 4.55636 4.57028 4.62701 4.73654 4.78651 4.79497 4.84623 5.03206 5.08756 5.18668 5.21695 5.23344 5.29367 5.31531 5.34008 5.62355 5.88034 5.95911 6.40058 6.48880 6.68046 6.78399 7.07821 7.21487 7.49764 7.63625 7.64471 7.82181 7.94424 8.27854 8.39060 8.98090 9.55811 11.06574 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.002049 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.249930 B =13662.275723 C =13861.213872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.461 3.539 3 O -0.514 6.514 4 O -0.334 6.334 5 C 0.054 3.946 6 C 0.543 3.457 7 O -0.515 6.515 8 N -0.638 5.638 9 C 0.136 3.864 10 C 0.064 3.936 11 C 0.074 3.926 12 C 0.103 3.897 13 N -0.597 5.597 14 C 0.114 3.886 15 C 0.014 3.986 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.479 3.521 25 O -0.533 6.533 26 C 0.050 3.950 27 O -0.337 6.337 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.133 0.867 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.288 6.223 4.160 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.305 3.695 3 O -0.402 6.402 4 O -0.249 6.249 5 C -0.023 4.023 6 C 0.331 3.669 7 O -0.390 6.390 8 N -0.376 5.376 9 C 0.015 3.985 10 C 0.022 3.978 11 C -0.049 4.049 12 C -0.022 4.022 13 N -0.331 5.331 14 C -0.007 4.007 15 C -0.024 4.024 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.265 3.735 25 O -0.411 6.411 26 C -0.029 4.029 27 O -0.255 6.255 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.034 0.966 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.151 0.849 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.289 6.087 3.662 27.232 hybrid contribution 1.292 0.388 0.507 1.441 sum -24.997 6.475 4.169 26.156 Atomic orbital electron populations 1.21624 0.86328 1.06160 1.06067 1.24024 0.92349 0.81196 0.71972 1.90721 1.70802 1.33029 1.45635 1.86569 1.19732 1.34835 1.83784 1.22576 0.78739 0.95746 1.05229 1.19546 0.80391 0.90297 0.76633 1.90774 1.57459 1.42135 1.48592 1.49700 1.03052 1.10852 1.74015 1.23149 0.83549 0.90483 1.01366 1.22991 0.94325 0.96991 0.83479 1.24017 0.82830 0.95521 1.02503 1.21872 0.86126 0.97247 0.96919 1.47700 1.17336 1.47497 1.20518 1.21988 0.80323 1.02123 0.96226 1.19355 0.92532 0.92911 0.97600 1.21071 0.94290 1.11976 1.28767 0.92527 1.25002 0.99071 0.95097 0.95115 1.69972 1.31662 1.15737 1.35698 0.86555 0.83702 0.78570 0.78929 1.20659 1.21182 1.19817 1.20605 0.90405 0.80638 0.81832 1.90784 1.47589 1.41088 1.61589 1.22879 0.88947 0.90985 1.00118 1.88140 1.73629 1.47411 1.16319 0.87495 0.87672 0.88432 0.88007 0.88013 0.87938 0.87034 0.87397 0.89026 0.89419 0.88980 0.90537 0.91594 0.96607 0.95890 0.92920 0.84939 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 10.41 36.00 0.37 -0.18 16 2 C 0.46 3.86 8.07 36.00 0.29 4.15 16 3 O -0.51 -5.75 16.85 -18.75 -0.32 -6.07 16 4 O -0.33 -3.28 9.75 -45.89 -0.45 -3.73 16 5 C 0.05 0.48 5.69 36.01 0.20 0.68 16 6 C 0.54 5.93 8.14 -10.99 -0.09 5.84 16 7 O -0.52 -7.62 17.23 -14.11 -0.24 -7.87 16 8 N -0.64 -5.79 3.61 -181.04 -0.65 -6.44 16 9 C 0.14 1.13 8.24 -3.20 -0.03 1.11 16 10 C 0.06 0.60 1.16 -90.53 -0.10 0.50 16 11 C 0.07 0.54 7.73 -3.18 -0.02 0.52 16 12 C 0.10 1.15 5.89 -4.39 -0.03 1.12 16 13 N -0.60 -9.47 2.83 -174.67 -0.50 -9.97 16 14 C 0.11 2.21 5.21 -4.04 -0.02 2.19 16 15 C 0.01 0.35 5.29 -27.88 -0.15 0.20 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 20 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 24 C 0.48 7.92 7.57 -11.71 -0.09 7.83 16 25 O -0.53 -11.31 16.33 5.56 0.09 -11.22 16 26 C 0.05 0.59 6.66 35.75 0.24 0.83 16 27 O -0.34 -3.95 10.66 -35.23 -0.38 -4.33 16 28 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.10 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.11 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.11 0.57 7.91 -51.93 -0.41 0.16 16 36 H 0.09 0.60 7.01 -51.93 -0.36 0.24 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 0.78 7.76 -51.93 -0.40 0.37 16 39 H 0.08 1.61 7.29 -51.93 -0.38 1.24 16 40 H 0.07 1.13 7.96 -51.93 -0.41 0.71 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 44 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.09 0.78 7.15 -51.93 -0.37 0.41 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -38.96 386.67 -7.26 -46.22 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -6.53 Total: -4.48 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 0.17 Total: 11.59 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.41 Total: -42.32 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -1.29 Total: -33.21 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.96 -7.26 -46.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270516143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.645 kcal (2) G-P(sol) polarization free energy of solvation -38.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds