Wall clock time and date at job start Sat Apr 11 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20826 * 119.99579 * 2 1 4 4 O 1.34223 * 120.00081 * 179.97438 * 2 1 3 5 5 C 1.45197 * 117.00030 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47267 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99890 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99887 * 179.97438 * 6 5 4 9 9 C 1.47687 * 134.45496 * 179.97438 * 8 6 5 10 10 C 1.53381 * 85.96384 * 155.72366 * 9 8 6 11 11 C 1.47686 * 134.45646 * 359.97311 * 8 6 5 12 12 C 1.52550 * 113.84445 * 138.01511 * 10 9 8 13 13 N 1.46276 * 109.56958 * 176.53357 * 12 10 9 14 14 C 1.46494 * 118.71725 * 163.64906 * 13 12 10 15 15 C 1.53003 * 109.46742 * 90.00506 * 14 13 12 16 16 C 1.50708 * 109.46821 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99902 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99830 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00153 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46943 * 90.00376 * 20 18 16 22 22 H 1.48497 * 109.47404 * 210.00281 * 20 18 16 23 23 H 1.48503 * 109.47073 * 330.00974 * 20 18 16 24 24 C 1.33720 * 122.56653 * 343.93868 * 13 12 10 25 25 O 1.21280 * 118.38380 * 183.21690 * 24 13 12 26 26 C 1.50173 * 123.23659 * 3.22694 * 24 13 12 27 27 O 1.42680 * 113.80095 * 268.70374 * 10 9 8 28 28 H 1.08998 * 109.47396 * 270.00380 * 1 2 3 29 29 H 1.09001 * 109.47681 * 30.00467 * 1 2 3 30 30 H 1.09003 * 109.47391 * 150.00131 * 1 2 3 31 31 H 1.09004 * 109.47419 * 59.99599 * 5 4 2 32 32 H 1.09001 * 109.46796 * 299.99679 * 5 4 2 33 33 H 1.09004 * 113.78731 * 41.46513 * 9 8 6 34 34 H 1.08995 * 113.79578 * 269.99297 * 9 8 6 35 35 H 1.09000 * 113.79550 * 90.01619 * 11 8 6 36 36 H 1.09000 * 113.79260 * 318.52929 * 11 8 6 37 37 H 1.09000 * 109.45660 * 56.50774 * 12 10 9 38 38 H 1.09002 * 109.44232 * 296.55182 * 12 10 9 39 39 H 1.09000 * 109.47241 * 209.99891 * 14 13 12 40 40 H 1.09000 * 109.47665 * 330.00539 * 14 13 12 41 41 H 1.08991 * 109.46998 * 299.99717 * 15 14 13 42 42 H 1.08999 * 109.47281 * 60.00367 * 15 14 13 43 43 H 0.96996 * 119.99786 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.35073 * 222.12348 * 26 24 13 45 45 H 1.09005 * 109.22331 * 102.49524 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1110 1.0464 0.0000 4 8 2.1781 -1.1624 0.0005 5 6 3.6281 -1.0864 0.0011 6 6 4.2041 -2.4789 0.0022 7 8 3.4654 -3.4408 0.0030 8 7 5.5403 -2.6555 0.0024 9 6 6.4276 -3.8360 0.0038 10 6 7.4776 -2.9126 -0.6265 11 6 6.7038 -1.7458 0.0011 12 6 8.8814 -3.0967 -0.0584 13 7 9.8183 -2.2345 -0.7785 14 6 11.1310 -1.9704 -0.1842 15 6 12.1272 -3.0314 -0.6562 16 6 13.4778 -2.7593 -0.0453 17 1 13.6120 -1.9145 0.6139 18 6 14.5418 -3.5896 -0.3273 19 7 14.3782 -4.6187 -1.1298 20 14 16.2160 -3.2521 0.4292 21 1 16.3251 -3.9644 1.7277 22 1 17.2800 -3.7314 -0.4892 23 1 16.3739 -1.7922 0.6508 24 6 9.5212 -1.6734 -1.9554 25 8 10.3761 -1.0198 -2.5146 26 6 8.1811 -1.8126 -2.6187 27 8 7.4620 -2.9122 -2.0532 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 3.9638 -0.5540 0.8910 32 1 3.9643 -0.5545 -0.8890 33 1 6.0942 -4.6374 -0.6556 34 1 6.6920 -4.1862 1.0016 35 1 7.0505 -1.4739 0.9981 36 1 6.5899 -0.8871 -0.6605 37 1 9.1853 -4.1373 -0.1717 38 1 8.8827 -2.8310 0.9988 39 1 11.4775 -0.9840 -0.4924 40 1 11.0515 -2.0045 0.9024 41 1 11.7807 -4.0177 -0.3481 42 1 12.2068 -2.9972 -1.7428 43 1 15.1267 -5.2030 -1.3279 44 1 8.3224 -1.9839 -3.6858 45 1 7.6113 -0.8949 -2.4725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270516143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:08 Heat of formation + Delta-G solvation = -172.353485 kcal Electronic energy + Delta-G solvation = -29678.318566 eV Core-core repulsion = 25276.216310 eV Total energy + Delta-G solvation = -4402.102256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.52863 -41.64179 -40.77028 -39.46078 -37.61061 -37.25260 -36.97259 -35.11167 -32.52303 -31.93480 -31.23100 -29.50938 -28.88195 -27.50816 -26.86020 -26.28214 -23.68435 -22.49056 -22.12827 -20.50496 -19.76176 -18.88879 -18.78613 -18.61582 -18.34347 -17.97003 -17.53615 -17.41406 -17.01258 -16.65852 -16.45705 -16.33215 -15.94284 -15.71562 -15.21882 -14.80268 -14.74401 -14.44125 -14.28828 -14.25083 -14.03083 -13.97291 -13.73366 -13.42486 -13.31656 -13.26825 -13.12569 -12.83887 -12.76961 -12.59372 -12.21514 -11.98451 -11.89094 -11.79191 -11.74436 -11.50660 -11.34520 -11.06393 -10.57356 -10.46967 -9.94379 -9.66940 -8.21612 -6.33715 1.04157 1.09008 1.33883 1.40014 1.42547 1.46707 1.53467 1.84042 1.99974 2.28355 2.41664 3.01859 3.11893 3.12613 3.20388 3.62101 3.71827 3.81019 3.94471 3.99292 4.05604 4.20304 4.30909 4.37092 4.39153 4.46251 4.49487 4.51823 4.57311 4.57537 4.63642 4.67940 4.76744 4.92333 4.96823 5.17989 5.33479 5.46712 5.59710 5.70968 5.83633 6.17768 6.35048 6.43531 6.59897 6.82551 6.86602 7.07364 7.36050 8.90359 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.002049 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.249930 B =13662.275723 C =13861.213872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.460 3.540 3 O -0.547 6.547 4 O -0.350 6.350 5 C 0.054 3.946 6 C 0.542 3.458 7 O -0.564 6.564 8 N -0.637 5.637 9 C 0.136 3.864 10 C 0.059 3.941 11 C 0.083 3.917 12 C 0.098 3.902 13 N -0.598 5.598 14 C 0.130 3.870 15 C 0.023 3.977 16 C -0.541 4.541 17 H 0.068 0.932 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.287 1.287 23 H -0.263 1.263 24 C 0.471 3.529 25 O -0.591 6.591 26 C 0.062 3.938 27 O -0.350 6.350 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.000 1.000 42 H -0.029 1.029 43 H 0.263 0.737 44 H 0.137 0.863 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.419 7.360 6.251 29.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.306 3.694 3 O -0.437 6.437 4 O -0.266 6.266 5 C -0.023 4.023 6 C 0.332 3.668 7 O -0.442 6.442 8 N -0.373 5.373 9 C 0.015 3.985 10 C 0.018 3.982 11 C -0.039 4.039 12 C -0.024 4.024 13 N -0.329 5.329 14 C 0.008 3.992 15 C -0.015 4.015 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.213 1.213 23 H -0.188 1.188 24 C 0.260 3.740 25 O -0.472 6.472 26 C -0.016 4.016 27 O -0.268 6.268 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.127 0.873 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.148 0.852 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.018 0.982 42 H -0.010 1.010 43 H 0.071 0.929 44 H 0.154 0.846 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.444 7.215 5.781 28.960 hybrid contribution 1.647 -0.027 -0.169 1.656 sum -25.797 7.188 5.612 27.362 Atomic orbital electron populations 1.21786 0.82989 1.07292 1.07623 1.24892 0.93734 0.80247 0.70570 1.90700 1.71720 1.33896 1.47419 1.86586 1.20332 1.35835 1.83861 1.22658 0.78577 0.94496 1.06573 1.19892 0.80590 0.90558 0.75803 1.90749 1.58683 1.43652 1.51118 1.49721 1.02964 1.11761 1.72849 1.23332 0.82663 0.89922 1.02629 1.23081 0.93567 0.99177 0.82370 1.24217 0.80812 0.94675 1.04224 1.22185 0.85839 0.95776 0.98616 1.47719 1.16699 1.47737 1.20727 1.21534 0.80982 0.98792 0.97919 1.19182 0.93977 0.94126 0.94210 1.21570 0.95469 1.12122 1.28776 0.91405 1.26009 1.03577 0.94794 0.95539 1.70121 1.32988 1.16946 1.37297 0.85398 0.78130 0.78916 0.78290 1.19111 1.21293 1.18762 1.21538 0.91647 0.79405 0.81460 1.90754 1.49727 1.43686 1.63025 1.22829 0.86509 0.92638 0.99666 1.88143 1.73119 1.47634 1.17951 0.85539 0.86452 0.87324 0.86212 0.86940 0.89178 0.83985 0.84248 0.87819 0.90556 0.85166 0.92416 0.88265 0.98186 1.01032 0.92854 0.84578 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 10.41 71.24 0.74 -0.05 16 2 C 0.46 7.08 8.07 71.24 0.57 7.65 16 3 O -0.55 -11.61 16.85 21.96 0.37 -11.24 16 4 O -0.35 -6.51 9.75 -45.00 -0.44 -6.95 16 5 C 0.05 0.85 5.69 71.24 0.41 1.26 16 6 C 0.54 11.04 8.14 87.66 0.71 11.75 16 7 O -0.56 -16.48 17.23 15.76 0.27 -16.21 16 8 N -0.64 -9.93 3.61 -850.07 -3.07 -13.00 16 9 C 0.14 1.95 8.24 86.27 0.71 2.66 16 10 C 0.06 0.97 1.16 -10.64 -0.01 0.96 16 11 C 0.08 0.89 7.73 86.29 0.67 1.56 16 12 C 0.10 1.98 5.89 86.27 0.51 2.49 16 13 N -0.60 -18.49 2.83 -825.52 -2.34 -20.83 16 14 C 0.13 5.02 5.21 86.38 0.45 5.47 16 15 C 0.02 1.20 5.29 29.85 0.16 1.36 16 16 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 20 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 C 0.47 15.54 7.57 87.66 0.66 16.21 16 25 O -0.59 -25.91 16.33 -3.03 -0.05 -25.96 16 26 C 0.06 1.39 6.66 71.07 0.47 1.87 16 27 O -0.35 -7.68 10.66 -148.98 -1.59 -9.27 16 28 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.12 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.11 1.51 8.13 -2.39 -0.02 1.49 16 33 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.14 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.14 0.73 7.91 -2.39 -0.02 0.71 16 36 H 0.10 0.94 7.01 -2.39 -0.02 0.93 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.13 1.64 7.76 -2.39 -0.02 1.62 16 39 H 0.06 2.46 7.29 -2.39 -0.02 2.45 16 40 H 0.10 3.17 7.96 -2.39 -0.02 3.15 16 41 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 43 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.14 2.96 8.14 -2.39 -0.02 2.95 16 45 H 0.12 1.87 7.15 -2.38 -0.02 1.85 16 Total: -1.00 -89.75 386.67 3.22 -86.53 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.01 Total: 4.37 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 6.75 Total: 23.56 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -5.12 Total: -90.74 kcal Atomic # 8 Polarization: -68.19 SS G_CDS: -1.44 Total: -69.63 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -89.75 3.22 -86.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270516143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.827 kcal (2) G-P(sol) polarization free energy of solvation -89.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds