Wall clock time and date at job start Sat Apr 11 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.99971 * 2 1 4 4 O 1.21283 * 119.99649 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99774 * 359.72768 * 3 2 1 6 6 S 1.81008 * 109.46759 * 180.02562 * 5 3 2 7 7 C 1.76198 * 99.99946 * 179.97438 * 6 5 3 8 8 H 1.08000 * 119.99996 * 359.97438 * 7 6 5 9 9 C 1.38798 * 120.00252 * 179.97438 * 7 6 5 10 10 N 1.31635 * 119.99702 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00159 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47247 * 59.99814 * 11 9 7 13 13 H 1.48504 * 109.46907 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47096 * 299.99984 * 11 9 7 15 15 C 1.46499 * 120.00136 * 179.97438 * 2 1 3 16 16 H 1.08994 * 109.47156 * 179.97438 * 15 2 1 17 17 C 1.52993 * 109.47238 * 300.00256 * 15 2 1 18 18 N 1.46900 * 109.47423 * 305.00115 * 17 15 2 19 19 C 1.46897 * 111.00304 * 180.02562 * 18 17 15 20 20 C 1.50700 * 109.47080 * 179.97438 * 19 18 17 21 21 C 1.40905 * 125.30517 * 94.71767 * 20 19 18 22 22 N 1.29951 * 109.39072 * 179.80289 * 21 20 19 23 23 O 1.41879 * 107.41377 * 0.44230 * 22 21 20 24 24 N 1.29953 * 125.30517 * 275.01918 * 20 19 18 25 25 C 1.53001 * 109.46682 * 60.00157 * 15 2 1 26 26 C 1.52999 * 117.49860 * 128.75054 * 25 15 2 27 27 C 1.53002 * 117.50269 * 60.08963 * 25 15 2 28 28 H 1.08999 * 109.47256 * 89.99766 * 1 2 3 29 29 H 1.08998 * 109.47416 * 209.99869 * 1 2 3 30 30 H 1.09008 * 109.47058 * 330.00468 * 1 2 3 31 31 H 1.09001 * 109.46809 * 299.99238 * 5 3 2 32 32 H 1.08993 * 109.47525 * 59.99679 * 5 3 2 33 33 H 0.97000 * 119.99806 * 179.97438 * 10 9 7 34 34 H 1.09008 * 109.47366 * 64.99919 * 17 15 2 35 35 H 1.09004 * 109.47335 * 184.99304 * 17 15 2 36 36 H 1.00904 * 110.99559 * 303.95481 * 18 17 15 37 37 H 1.09000 * 109.47158 * 299.99384 * 19 18 17 38 38 H 1.09002 * 109.47386 * 59.99552 * 19 18 17 39 39 H 1.07998 * 125.29980 * 359.97438 * 21 20 19 40 40 H 1.09000 * 115.54870 * 274.41405 * 25 15 2 41 41 H 1.08992 * 117.49962 * 359.97438 * 26 25 15 42 42 H 1.08999 * 117.49936 * 145.01907 * 26 25 15 43 43 H 1.08998 * 117.49873 * 214.98031 * 27 25 15 44 44 H 1.09006 * 117.49212 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0062 6 16 2.5616 3.8481 -0.0054 7 6 1.4416 5.2082 -0.0139 8 1 0.3763 5.0305 -0.0181 9 6 1.9283 6.5081 -0.0151 10 7 3.2267 6.7247 -0.0094 11 14 0.7408 7.9501 -0.0234 12 1 -0.1191 7.8901 1.1858 13 1 1.5070 9.2222 -0.0241 14 1 -0.1094 7.8842 -1.2392 15 6 2.1975 -1.2687 0.0006 16 1 3.2691 -1.0695 0.0000 17 6 1.8279 -2.0705 1.2501 18 7 2.0712 -1.2531 2.4462 19 6 1.7273 -1.9925 3.6680 20 6 1.9901 -1.1242 4.8714 21 6 1.0317 -0.3211 5.5210 22 7 1.5896 0.2923 6.5216 23 8 2.9551 -0.0923 6.5475 24 7 3.1372 -0.9950 5.4682 25 6 1.8279 -2.0715 -1.2484 26 6 2.9740 -2.6067 -2.1090 27 6 2.1228 -1.4370 -2.6090 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 0.7625 2.5279 -0.8990 32 1 0.7550 2.5322 0.8809 33 1 3.5668 7.6331 -0.0107 34 1 0.7741 -2.3459 1.2065 35 1 2.4376 -2.9728 1.2963 36 1 3.0271 -0.9311 2.4757 37 1 0.6729 -2.2677 3.6415 38 1 2.3367 -2.8940 3.7309 39 1 -0.0056 -0.2317 5.2339 40 1 0.9323 -2.6870 -1.1636 41 1 3.9914 -2.3867 -1.7857 42 1 2.8324 -3.5742 -2.5907 43 1 1.4214 -1.6353 -3.4195 44 1 2.5798 -0.4473 -2.6143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277622172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:27 Heat of formation + Delta-G solvation = 68.006797 kcal Electronic energy + Delta-G solvation = -27164.312934 eV Core-core repulsion = 23247.679105 eV Total energy + Delta-G solvation = -3916.633830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.40088 -41.05725 -38.67871 -37.27405 -35.83906 -34.57778 -34.33188 -33.66336 -31.60484 -29.67780 -27.70573 -27.67072 -26.86585 -24.42089 -23.44855 -23.09558 -22.09432 -21.65833 -20.25964 -19.52804 -18.37006 -18.12124 -17.18907 -17.06096 -17.00791 -16.87314 -16.41920 -16.13359 -15.86739 -15.65184 -15.59281 -15.19907 -14.81115 -14.52065 -14.33528 -14.21115 -13.56023 -13.43098 -13.23831 -13.15821 -12.97862 -12.86535 -12.82262 -12.78982 -12.65357 -12.59503 -12.39780 -12.23354 -11.99566 -11.98079 -11.70779 -11.31224 -11.12199 -11.11772 -10.63993 -10.23522 -9.53261 -9.42504 -8.65150 -8.33756 -6.11490 -0.50394 1.03079 1.27998 1.43402 1.47342 1.54389 1.56937 1.74770 2.15058 2.16477 2.29466 2.90438 3.00280 3.03536 3.17883 3.33124 3.66290 3.83603 3.92543 3.98631 4.11157 4.12084 4.27930 4.30519 4.36830 4.42638 4.44110 4.47618 4.53350 4.61202 4.68841 4.75090 4.82197 4.91073 4.94390 5.06667 5.12861 5.28322 5.34294 5.41368 5.72132 5.84481 5.92025 6.08710 6.19862 6.46466 7.07292 7.33277 8.75272 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007399 B = 0.003788 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3783.601433 B = 7390.865452 C =10290.385025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.580 5.580 3 C 0.537 3.463 4 O -0.575 6.575 5 C -0.118 4.118 6 S -0.158 6.158 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.013 3.987 10 N -0.913 5.913 11 Si 0.997 3.003 12 H -0.262 1.262 13 H -0.280 1.280 14 H -0.260 1.260 15 C 0.167 3.833 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.693 5.693 19 C 0.130 3.870 20 C 0.091 3.909 21 C 0.086 3.914 22 N -0.307 5.307 23 O -0.029 6.029 24 N -0.303 5.303 25 C -0.147 4.147 26 C -0.167 4.167 27 C -0.184 4.184 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.270 0.730 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.333 0.667 37 H 0.153 0.847 38 H 0.072 0.928 39 H 0.263 0.737 40 H 0.144 0.856 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.629 -26.693 1.616 30.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.312 5.312 3 C 0.324 3.676 4 O -0.455 6.455 5 C -0.270 4.270 6 S 0.069 5.931 7 C -0.692 4.692 8 H 0.100 0.900 9 C -0.191 4.191 10 N -0.550 5.550 11 Si 0.818 3.182 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.184 1.184 15 C 0.063 3.937 16 H 0.080 0.920 17 C -0.065 4.065 18 N -0.325 5.325 19 C 0.001 3.999 20 C -0.093 4.093 21 C -0.118 4.118 22 N -0.054 5.054 23 O -0.161 6.161 24 N -0.050 5.050 25 C -0.166 4.166 26 C -0.204 4.204 27 C -0.222 4.222 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.090 0.910 39 H 0.278 0.722 40 H 0.161 0.839 41 H 0.096 0.904 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.290 -25.829 2.598 28.308 hybrid contribution -0.868 0.810 -0.399 1.253 sum -12.158 -25.019 2.199 27.903 Atomic orbital electron populations 1.21951 0.77305 1.04680 1.02420 1.47492 1.07961 1.03545 1.72153 1.19921 0.87073 0.85450 0.75137 1.90662 1.15902 1.87416 1.51496 1.23326 1.02486 0.95427 1.05732 1.85602 1.12977 0.97550 1.96989 1.23154 0.94579 0.92699 1.58737 0.89988 1.26130 0.97538 1.01708 0.93764 1.70193 1.14214 1.22420 1.48153 0.85029 0.77658 0.75895 0.79583 1.18623 1.20512 1.18429 1.20700 0.96326 0.82507 0.94148 0.92034 1.22325 1.04239 0.93539 0.86414 1.60441 1.30283 1.40338 1.01435 1.20828 1.06099 0.91322 0.81645 1.25271 0.88845 0.96709 0.98487 1.26878 1.04970 0.90407 0.89515 1.79915 0.89989 1.16573 1.18948 1.93400 1.22532 1.55404 1.44788 1.79883 1.21078 1.05571 0.98496 1.22596 1.01560 1.02436 0.89995 1.23047 0.95312 0.98784 1.03258 1.22789 1.04388 0.96846 0.98129 0.92111 0.87439 0.91551 0.88197 0.87880 0.92102 0.86473 0.91810 0.84994 0.82972 0.91008 0.72169 0.83869 0.90394 0.86163 0.87156 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 9.61 127.77 1.23 2.35 16 2 N -0.58 -13.30 2.37 -822.60 -1.95 -15.25 16 3 C 0.54 19.62 7.69 87.65 0.67 20.29 16 4 O -0.58 -26.71 15.19 -3.04 -0.05 -26.76 16 5 C -0.12 -4.78 4.71 71.24 0.34 -4.44 16 6 S -0.16 -9.01 20.57 -56.49 -1.16 -10.17 16 7 C -0.54 -31.54 9.50 67.95 0.65 -30.90 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 C 0.01 0.76 5.49 84.86 0.47 1.23 16 10 N -0.91 -57.37 13.22 21.65 0.29 -57.08 16 11 Si 1.00 44.17 29.55 68.60 2.03 46.20 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 14 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 15 C 0.17 3.06 2.46 44.99 0.11 3.17 16 16 H 0.06 1.67 6.66 -2.39 -0.02 1.65 16 17 C 0.06 0.64 4.91 86.30 0.42 1.06 16 18 N -0.69 -10.24 6.22 -517.93 -3.22 -13.46 16 19 C 0.13 1.12 6.23 85.56 0.53 1.65 16 20 C 0.09 1.55 6.70 43.49 0.29 1.84 16 21 C 0.09 1.33 11.90 85.62 1.02 2.35 16 22 N -0.31 -7.83 12.98 -56.80 -0.74 -8.56 16 23 O -0.03 -0.90 13.71 70.16 0.96 0.06 16 24 N -0.30 -7.90 12.98 -47.15 -0.61 -8.52 16 25 C -0.15 -1.97 4.83 -10.79 -0.05 -2.02 16 26 C -0.17 -2.50 10.18 30.62 0.31 -2.19 16 27 C -0.18 -3.46 10.13 30.62 0.31 -3.15 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.11 0.70 6.53 -2.39 -0.02 0.68 16 30 H 0.07 1.08 6.44 -2.38 -0.02 1.07 16 31 H 0.10 3.71 8.11 -2.40 -0.02 3.69 16 32 H 0.10 3.81 7.39 -2.40 -0.02 3.79 16 33 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.12 0.39 6.88 -2.38 -0.02 0.38 16 35 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.33 7.45 8.72 -89.69 -0.78 6.67 16 37 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.26 1.04 8.06 -2.91 -0.02 1.01 16 40 H 0.14 0.95 8.11 -2.39 -0.02 0.93 16 41 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 42 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -89.45 390.53 2.10 -87.36 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.25 Total: 14.94 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 6.30 Total: -8.75 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -6.23 Total: -102.88 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: 0.92 Total: -26.70 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.16 Total: -10.17 kcal Total: -89.45 2.10 -87.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277622172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.364 kcal (2) G-P(sol) polarization free energy of solvation -89.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds