Wall clock time and date at job start Sat Apr 11 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35039 * 126.40299 * 2 1 4 4 N 1.30494 * 108.70258 * 179.76689 * 3 2 1 5 5 C 1.34132 * 109.25696 * 0.38052 * 4 3 2 6 6 S 1.76195 * 125.99057 * 179.88368 * 5 4 3 7 7 O 1.42100 * 106.40038 * 156.15472 * 6 5 4 8 8 O 1.42103 * 106.40330 * 23.23160 * 6 5 4 9 9 N 1.65606 * 107.21802 * 269.68925 * 6 5 4 10 10 C 1.47013 * 120.28835 * 282.68818 * 9 6 5 11 11 C 1.54142 * 108.03562 * 228.72900 * 10 9 6 12 12 H 1.08995 * 112.95705 * 174.87761 * 11 10 9 13 13 C 1.55419 * 106.37752 * 299.58599 * 11 10 9 14 14 C 1.55183 * 100.67430 * 74.00119 * 13 11 10 15 15 H 1.08997 * 113.05829 * 162.39615 * 14 13 11 16 16 C 1.46984 * 120.28307 * 102.66185 * 9 6 5 17 17 N 1.48142 * 104.31721 * 39.90971 * 14 13 11 18 18 C 1.46893 * 111.00627 * 211.95386 * 17 14 13 19 19 C 1.50695 * 109.47551 * 177.34822 * 18 17 14 20 20 H 1.08006 * 119.99716 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00507 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99712 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00187 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47427 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47311 * 120.00420 * 23 21 19 26 26 H 1.48501 * 109.47229 * 239.99998 * 23 21 19 27 27 C 1.47470 * 108.25720 * 334.02187 * 17 14 13 28 28 C 1.34670 * 108.01652 * 359.61833 * 5 4 3 29 29 H 1.09000 * 109.47358 * 270.00301 * 1 2 3 30 30 H 1.09008 * 109.46858 * 29.99929 * 1 2 3 31 31 H 1.08994 * 109.47752 * 149.99480 * 1 2 3 32 32 H 1.08001 * 125.65039 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.75148 * 348.36622 * 10 9 6 34 34 H 1.09000 * 109.75166 * 109.04581 * 10 9 6 35 35 H 1.08999 * 111.17749 * 316.14643 * 13 11 10 36 36 H 1.09004 * 111.17519 * 191.84979 * 13 11 10 37 37 H 1.09002 * 109.70637 * 11.90484 * 16 9 6 38 38 H 1.08998 * 109.74251 * 251.30780 * 16 9 6 39 39 H 1.08997 * 109.47258 * 297.35402 * 18 17 14 40 40 H 1.09002 * 109.46750 * 57.35348 * 18 17 14 41 41 H 0.97000 * 120.00012 * 179.97438 * 22 21 19 42 42 H 1.09007 * 109.96514 * 120.41143 * 27 17 14 43 43 H 1.09000 * 109.96346 * 241.65923 * 27 17 14 44 44 H 1.08002 * 126.59044 * 180.23881 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5096 0.6901 0.0050 5 6 3.5460 -0.6507 0.0000 6 16 4.9993 -1.6470 0.0009 7 8 4.6234 -2.9043 0.5459 8 8 6.0368 -0.8428 0.5451 9 7 5.4039 -1.9251 -1.5807 10 6 4.6651 -2.9206 -2.3710 11 6 5.6924 -3.8292 -3.0745 12 1 5.2298 -4.6552 -3.6147 13 6 6.5440 -2.9033 -3.9871 14 6 7.4216 -2.1844 -2.9283 15 1 8.3036 -1.7084 -3.3568 16 6 6.5044 -1.1784 -2.2066 17 7 7.7681 -3.2476 -1.9567 18 6 7.9065 -2.6979 -0.6015 19 6 8.1942 -3.8157 0.3672 20 1 8.2673 -4.8330 0.0116 21 6 8.3650 -3.5399 1.7072 22 7 8.2764 -2.3012 2.1401 23 14 8.7223 -4.9256 2.9079 24 1 8.7719 -6.2158 2.1743 25 1 10.0293 -4.6825 3.5698 26 1 7.6504 -4.9801 3.9342 27 6 6.7141 -4.2780 -2.0039 28 6 2.2772 -1.1019 0.0000 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3634 -0.8898 -0.5139 32 1 1.9336 2.1143 0.0004 33 1 4.0341 -3.5184 -1.7134 34 1 4.0482 -2.4163 -3.1148 35 1 5.9151 -2.1937 -4.5247 36 1 7.1562 -3.4848 -4.6766 37 1 7.0710 -0.6483 -1.4410 38 1 6.1029 -0.4652 -2.9264 39 1 8.7269 -1.9804 -0.5825 40 1 6.9806 -2.1987 -0.3157 41 1 8.3963 -2.1072 3.0829 42 1 7.1459 -5.2396 -2.2815 43 1 6.2257 -4.3555 -1.0326 44 1 1.9611 -2.1346 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277940546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:30 Heat of formation + Delta-G solvation = 14.556359 kcal Electronic energy + Delta-G solvation = -30189.617775 eV Core-core repulsion = 26270.666161 eV Total energy + Delta-G solvation = -3918.951614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.21787 -41.54051 -38.16999 -36.75765 -35.64282 -35.15443 -34.58991 -33.17536 -31.57186 -31.01208 -28.18273 -28.04758 -26.30279 -25.34705 -24.24209 -23.40844 -22.43814 -21.11826 -20.99719 -19.76053 -18.89142 -18.50274 -18.13450 -17.19494 -16.83388 -16.74559 -16.53172 -16.23745 -15.71875 -15.39594 -15.25147 -15.14723 -14.89607 -14.49570 -14.10718 -13.95315 -13.79338 -13.68606 -13.51328 -13.50074 -13.18732 -12.96721 -12.88438 -12.80663 -12.70473 -12.47722 -12.39615 -11.92658 -11.71191 -11.65938 -11.29952 -11.27100 -11.21088 -11.06183 -10.88387 -10.51925 -10.14826 -9.95510 -8.68068 -8.02740 -6.15618 -0.52469 0.51643 1.34457 1.37315 1.49041 1.56395 1.71184 2.26232 2.43962 3.09373 3.23476 3.24537 3.48065 3.65834 3.73160 3.80517 3.86682 3.91929 3.99374 4.19701 4.24059 4.39989 4.43174 4.50876 4.57635 4.68946 4.73498 4.76906 4.82869 4.86644 4.93607 5.11686 5.13219 5.17363 5.22502 5.34641 5.39007 5.43304 5.49425 5.74153 5.79397 6.03463 6.16359 6.45686 6.69233 6.76549 6.98803 7.50414 9.02299 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012175 B = 0.005646 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.205067 B = 4958.428873 C = 6273.532870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.449 5.449 3 C 0.191 3.809 4 N -0.472 5.472 5 C -0.595 4.595 6 S 2.720 3.280 7 O -0.986 6.986 8 O -0.959 6.959 9 N -0.990 5.990 10 C 0.115 3.885 11 C -0.113 4.113 12 H 0.137 0.863 13 C -0.099 4.099 14 C 0.048 3.952 15 H 0.107 0.893 16 C 0.096 3.904 17 N -0.538 5.538 18 C 0.186 3.814 19 C -0.532 4.532 20 H 0.054 0.946 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.947 3.053 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.283 1.283 27 C 0.052 3.948 28 C 0.071 3.929 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.095 0.905 39 H -0.016 1.016 40 H 0.008 0.992 41 H 0.256 0.744 42 H 0.060 0.940 43 H 0.032 0.968 44 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.464 4.575 -13.758 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.128 5.128 3 C -0.095 4.095 4 N -0.189 5.189 5 C -0.807 4.807 6 S 2.810 3.190 7 O -0.976 6.976 8 O -0.948 6.948 9 N -0.830 5.830 10 C -0.010 4.010 11 C -0.133 4.133 12 H 0.154 0.846 13 C -0.136 4.136 14 C -0.062 4.062 15 H 0.124 0.876 16 C -0.030 4.030 17 N -0.262 5.262 18 C 0.059 3.941 19 C -0.571 4.571 20 H 0.072 0.928 21 C -0.198 4.198 22 N -0.542 5.542 23 Si 0.771 3.229 24 H -0.184 1.184 25 H -0.198 1.198 26 H -0.209 1.209 27 C -0.076 4.076 28 C -0.073 4.073 29 H 0.113 0.887 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.275 0.725 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.003 0.997 40 H 0.025 0.975 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -21.028 4.719 -12.957 25.147 hybrid contribution -1.109 -0.128 1.577 1.932 sum -22.137 4.590 -11.380 25.311 Atomic orbital electron populations 1.22688 0.72028 1.07764 1.05855 1.46080 1.10214 1.05487 1.50994 1.26236 0.84511 0.95818 1.02984 1.70227 1.22602 1.08571 1.17505 1.33337 1.17286 1.03816 1.26225 1.01183 0.72110 0.72744 0.72955 1.93497 1.85338 1.41907 1.76828 1.93600 1.54123 1.71056 1.76019 1.57482 1.43966 1.51098 1.30432 1.22018 0.93808 0.89325 0.95803 1.23222 0.95526 0.98705 0.95868 0.84574 1.22816 0.97147 0.98084 0.95595 1.23563 0.96793 0.92260 0.93607 0.87568 1.22210 0.87837 0.94840 0.98118 1.63648 1.43573 1.11703 1.07290 1.19984 0.95090 0.94023 0.85006 1.21456 1.48787 0.94196 0.92658 0.92794 1.25890 0.95770 0.97804 1.00351 1.70282 1.49615 1.19528 1.14745 0.85679 0.77825 0.80201 0.79150 1.18436 1.19846 1.20919 1.22719 0.91415 0.95496 0.98012 1.23075 0.88785 0.95254 1.00214 0.88697 0.85874 0.87196 0.72525 0.89986 0.87722 0.87882 0.89535 0.92166 0.88686 0.99742 0.97507 0.93516 0.92198 0.94958 0.76737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 11.18 127.77 1.43 1.68 16 2 N -0.45 -7.94 3.15 -552.53 -1.74 -9.68 16 3 C 0.19 4.20 12.56 180.27 2.26 6.47 16 4 N -0.47 -16.68 11.25 -197.78 -2.23 -18.91 16 5 C -0.59 -21.70 7.13 83.52 0.60 -21.10 16 6 S 2.72 126.81 4.39 -56.49 -0.25 126.56 16 7 O -0.99 -50.15 16.61 -128.00 -2.13 -52.28 16 8 O -0.96 -55.83 14.78 -128.00 -1.89 -57.72 16 9 N -0.99 -37.25 2.03 -509.38 -1.03 -38.28 16 10 C 0.11 3.16 5.75 86.67 0.50 3.66 16 11 C -0.11 -3.05 4.32 -9.01 -0.04 -3.09 16 12 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 13 C -0.10 -2.41 6.16 32.18 0.20 -2.21 16 14 C 0.05 1.69 4.38 45.79 0.20 1.89 16 15 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 16 C 0.10 3.59 5.27 86.65 0.46 4.05 16 17 N -0.54 -25.05 5.24 -861.03 -4.51 -29.56 16 18 C 0.19 10.88 3.47 85.56 0.30 11.18 16 19 C -0.53 -33.89 8.12 25.60 0.21 -33.68 16 20 H 0.05 3.38 7.30 -2.91 -0.02 3.36 16 21 C 0.00 0.11 5.46 84.65 0.46 0.57 16 22 N -0.90 -61.60 13.29 21.45 0.28 -61.31 16 23 Si 0.95 49.93 29.54 68.60 2.03 51.96 16 24 H -0.26 -13.05 7.11 99.48 0.71 -12.35 16 25 H -0.27 -13.74 7.11 99.48 0.71 -13.04 16 26 H -0.28 -14.72 7.11 99.48 0.71 -14.02 16 27 C 0.05 2.14 5.01 86.75 0.43 2.57 16 28 C 0.07 1.81 11.31 83.09 0.94 2.75 16 29 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.12 -0.12 8.14 -2.38 -0.02 -0.14 16 31 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.26 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.08 2.26 7.20 -2.39 -0.02 2.25 16 34 H 0.10 1.96 8.10 -2.39 -0.02 1.94 16 35 H 0.10 1.85 7.90 -2.39 -0.02 1.83 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 2.83 5.70 -2.39 -0.01 2.82 16 38 H 0.10 2.74 8.12 -2.39 -0.02 2.72 16 39 H -0.02 -1.03 8.13 -2.39 -0.02 -1.05 16 40 H 0.01 0.45 1.13 -17.29 -0.02 0.43 16 41 H 0.26 16.62 8.31 -92.71 -0.77 15.85 16 42 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.03 1.59 6.37 -2.39 -0.02 1.58 16 44 H 0.22 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -102.15 353.08 -2.51 -104.67 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.00 Total: 9.82 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 7.94 Total: -25.26 kcal Atomic # 7 Polarization: -148.52 SS G_CDS: -9.22 Total: -157.74 kcal Atomic # 8 Polarization: -105.98 SS G_CDS: -4.02 Total: -110.00 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.03 Total: 51.96 kcal Atomic # 16 Polarization: 126.81 SS G_CDS: -0.25 Total: 126.56 kcal Total: -102.15 -2.51 -104.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.225 kcal (2) G-P(sol) polarization free energy of solvation -102.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds