Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35042 * 126.39529 * 2 1 4 4 N 1.30496 * 108.69987 * 180.02562 * 3 2 1 5 5 C 1.34135 * 109.25351 * 359.97438 * 4 3 2 6 6 S 1.76198 * 125.98646 * 180.02562 * 5 4 3 7 7 O 1.42102 * 106.40369 * 336.48391 * 6 5 4 8 8 O 1.42099 * 106.40212 * 203.56130 * 6 5 4 9 9 N 1.65601 * 107.21939 * 90.02541 * 6 5 4 10 10 C 1.47545 * 125.65749 * 269.97335 * 9 6 5 11 11 C 1.55151 * 105.01071 * 203.93697 * 10 9 6 12 12 C 1.53930 * 101.42985 * 324.37435 * 11 10 9 13 13 C 1.52564 * 115.95581 * 163.58104 * 12 11 10 14 14 N 1.48237 * 85.72871 * 94.88211 * 13 12 11 15 15 C 1.46895 * 111.00089 * 136.67803 * 14 13 12 16 16 C 1.50708 * 109.47012 * 70.34151 * 15 14 13 17 17 H 1.07998 * 119.99386 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00210 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99707 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99892 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47174 * 90.00430 * 20 18 16 22 22 H 1.48500 * 109.47213 * 209.99779 * 20 18 16 23 23 H 1.48497 * 109.47493 * 330.00062 * 20 18 16 24 24 C 1.48231 * 91.01946 * 23.67925 * 14 13 12 25 25 C 1.47360 * 125.66123 * 89.99613 * 9 6 5 26 26 C 1.34659 * 108.02089 * 0.26172 * 5 4 3 27 27 H 1.09004 * 109.46942 * 89.97672 * 1 2 3 28 28 H 1.08997 * 109.47124 * 209.97692 * 1 2 3 29 29 H 1.08998 * 109.47104 * 329.97865 * 1 2 3 30 30 H 1.08004 * 125.65122 * 0.04485 * 3 2 1 31 31 H 1.08995 * 110.33467 * 322.82041 * 10 9 6 32 32 H 1.08996 * 110.33284 * 84.94980 * 10 9 6 33 33 H 1.08995 * 111.03628 * 82.38419 * 11 10 9 34 34 H 1.08998 * 111.03846 * 206.28466 * 11 10 9 35 35 H 1.09004 * 113.83236 * 209.07801 * 13 12 11 36 36 H 1.08996 * 113.83672 * 340.68280 * 13 12 11 37 37 H 1.09000 * 109.46904 * 190.33764 * 15 14 13 38 38 H 1.08995 * 109.47607 * 310.34417 * 15 14 13 39 39 H 0.97006 * 119.99603 * 180.02562 * 19 18 16 40 40 H 1.09005 * 113.82908 * 222.11744 * 24 14 13 41 41 H 1.08999 * 113.94481 * 90.53334 * 24 14 13 42 42 H 1.09002 * 109.98296 * 297.30009 * 25 9 6 43 43 H 1.09004 * 109.98407 * 58.56038 * 25 9 6 44 44 H 1.08007 * 126.59332 * 179.69847 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6904 -0.0006 5 6 3.5460 -0.6505 -0.0004 6 16 4.9994 -1.6467 -0.0003 7 8 6.0370 -0.8426 -0.5444 8 8 4.6239 -2.9043 -0.5450 9 7 5.4034 -1.9242 1.5815 10 6 6.2915 -1.0798 2.4033 11 6 6.8321 -2.0232 3.5100 12 6 5.6091 -2.9212 3.7695 13 6 5.8818 -4.2193 4.5233 14 7 5.5027 -3.4625 5.7402 15 6 4.6308 -4.2646 6.6087 16 6 5.4297 -5.3822 7.2283 17 1 6.4802 -5.4859 7.0000 18 6 4.8198 -6.2716 8.0873 19 7 3.5407 -6.1450 8.3656 20 14 5.8100 -7.6573 8.8547 21 1 6.3911 -7.1968 10.1414 22 1 4.9226 -8.8222 9.1012 23 1 6.9034 -8.0545 7.9317 24 6 4.7111 -2.5057 4.9308 25 6 4.9360 -3.0556 2.4018 26 6 2.2773 -1.1017 -0.0055 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 1.9334 2.1145 0.0007 31 1 7.1131 -0.6945 1.7995 32 1 5.7294 -0.2574 2.8457 33 1 7.6767 -2.6086 3.1469 34 1 7.1032 -1.4622 4.4043 35 1 5.1927 -5.0264 4.2741 36 1 6.9268 -4.5284 4.5046 37 1 4.2204 -3.6318 7.3956 38 1 3.8164 -4.6843 6.0182 39 1 3.1117 -6.7706 8.9703 40 1 4.8347 -1.4657 5.2328 41 1 3.6669 -2.7915 4.8041 42 1 3.8527 -3.0120 2.5139 43 1 5.2245 -3.9978 1.9357 44 1 1.9613 -2.1345 -0.0113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277941643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = 36.910317 kcal Electronic energy + Delta-G solvation = -27736.353282 eV Core-core repulsion = 23818.371008 eV Total energy + Delta-G solvation = -3917.982274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.52901 -40.21885 -37.20506 -36.54517 -35.83996 -34.58243 -32.90739 -30.50716 -30.26277 -29.24280 -27.70202 -26.96390 -25.60968 -23.77483 -22.74770 -22.27312 -21.82958 -20.61644 -19.07797 -18.56099 -18.06193 -17.30980 -16.54961 -16.25584 -16.18187 -15.81785 -15.17688 -14.97045 -14.68769 -14.64146 -14.40842 -14.13189 -13.66173 -13.57223 -13.35414 -13.30115 -12.79862 -12.61330 -12.34331 -12.12606 -12.04893 -12.02933 -11.72166 -11.64828 -11.43204 -11.09182 -10.90924 -10.84321 -10.52417 -10.50133 -10.30142 -10.22548 -10.04035 -9.54138 -9.35666 -9.16219 -9.00903 -8.49487 -7.74432 -6.06675 -4.08152 0.32301 1.27110 2.19866 2.28975 3.06989 3.30595 3.36580 3.40475 3.75006 3.92465 4.19639 4.30345 4.38484 4.42756 4.50419 4.53647 4.68019 4.75480 4.79496 4.98069 5.07982 5.29618 5.35140 5.47829 5.54701 5.58161 5.80855 5.82527 5.85129 5.91443 6.02500 6.15323 6.18702 6.22512 6.32198 6.39550 6.44765 6.56562 6.65699 6.72925 7.20860 7.37027 7.62968 7.88042 8.11867 8.41707 8.99651 9.56628 11.04593 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.002737 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.529908 B =10225.973875 C =11070.863157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.457 5.457 3 C 0.183 3.817 4 N -0.414 5.414 5 C -0.561 4.561 6 S 2.743 3.257 7 O -0.944 6.944 8 O -0.955 6.955 9 N -1.006 6.006 10 C 0.120 3.880 11 C -0.096 4.096 12 C -0.101 4.101 13 C 0.037 3.963 14 N -0.475 5.475 15 C 0.161 3.839 16 C -0.509 4.509 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.013 3.987 25 C 0.132 3.868 26 C 0.068 3.932 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.215 0.785 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.030 0.970 38 H -0.003 1.003 39 H 0.261 0.739 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 13.701 -17.904 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.138 5.138 3 C -0.103 4.103 4 N -0.130 5.130 5 C -0.771 4.771 6 S 2.829 3.171 7 O -0.934 6.934 8 O -0.945 6.945 9 N -0.846 5.846 10 C -0.004 4.004 11 C -0.135 4.135 12 C -0.103 4.103 13 C -0.093 4.093 14 N -0.197 5.197 15 C 0.035 3.965 16 C -0.547 4.547 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.116 4.116 25 C 0.007 3.993 26 C -0.073 4.073 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.231 0.769 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.015 0.985 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.211 14.125 -18.161 23.590 hybrid contribution -2.042 -1.191 0.444 2.406 sum -7.253 12.934 -17.717 23.104 Atomic orbital electron populations 1.22242 0.75514 1.05629 1.04307 1.45797 1.08454 1.07040 1.52472 1.25401 0.85586 0.93926 1.05394 1.70334 1.19444 1.08172 1.15084 1.33648 1.16675 1.03331 1.23466 1.00608 0.72633 0.72632 0.71180 1.93558 1.53677 1.70652 1.75475 1.93591 1.84616 1.40296 1.75959 1.58618 1.60249 1.35588 1.30152 1.22135 0.92656 0.93186 0.92452 1.22384 0.96382 0.96727 0.98006 1.22583 0.96768 0.98712 0.92224 1.23503 1.02059 0.93489 0.90217 1.68613 1.30612 1.11087 1.09427 1.20195 0.91420 0.92515 0.92403 1.21100 0.96319 1.10705 1.26587 0.91954 1.24991 0.94947 0.98045 0.96595 1.69956 1.10047 1.37642 1.36206 0.86492 0.79831 0.81396 0.79666 1.20624 1.21327 1.19787 1.23731 0.95900 0.99422 0.92589 1.21699 0.98263 0.88462 0.90881 1.22772 0.89605 0.93679 1.01266 0.89806 0.88856 0.88700 0.76866 0.89916 0.91593 0.90255 0.89080 0.91198 0.90046 0.95144 0.98471 0.92928 0.90376 0.92051 0.91811 0.90338 0.78925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.18 59.85 0.67 0.85 16 2 N -0.46 -3.44 3.15 -125.99 -0.40 -3.84 16 3 C 0.18 1.60 12.56 -90.38 -1.14 0.47 16 4 N -0.41 -5.31 11.25 -13.86 -0.16 -5.47 16 5 C -0.56 -6.99 7.13 -17.81 -0.13 -7.12 16 6 S 2.74 37.39 6.09 -107.50 -0.66 36.74 16 7 O -0.94 -15.47 17.35 -57.17 -0.99 -16.46 16 8 O -0.95 -14.31 17.42 -57.17 -1.00 -15.30 16 9 N -1.01 -12.81 3.71 -111.68 -0.41 -13.23 16 10 C 0.12 1.44 7.12 -2.33 -0.02 1.42 16 11 C -0.10 -1.21 6.42 -25.11 -0.16 -1.37 16 12 C -0.10 -1.46 0.97 -154.62 -0.15 -1.61 16 13 C 0.04 0.66 6.78 -3.31 -0.02 0.63 16 14 N -0.47 -9.79 6.25 -246.97 -1.54 -11.34 16 15 C 0.16 4.09 4.58 -4.97 -0.02 4.06 16 16 C -0.51 -14.09 8.83 -34.44 -0.30 -14.40 16 17 H 0.06 1.72 7.80 -52.49 -0.41 1.31 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.01 0.21 7.22 -3.31 -0.02 0.19 16 25 C 0.13 1.73 6.50 -3.56 -0.02 1.70 16 26 C 0.07 0.66 11.31 -16.57 -0.19 0.48 16 27 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.21 0.95 8.06 -52.48 -0.42 0.52 16 31 H 0.08 0.94 7.78 -51.93 -0.40 0.54 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 35 H 0.07 1.31 7.79 -51.93 -0.40 0.90 16 36 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.00 -0.07 7.71 -51.93 -0.40 -0.47 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 41 H 0.06 1.03 7.66 -51.93 -0.40 0.63 16 42 H 0.06 0.76 7.86 -51.93 -0.41 0.35 16 43 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 44 H 0.19 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 377.71 15.07 5.69 5.69 Total: -1.00 -37.15 377.71 -11.97 -49.13 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.62 Total: -3.51 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -1.60 Total: -13.23 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -1.78 Total: -59.51 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.99 Total: -31.76 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 37.39 SS G_CDS: -0.66 Total: 36.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.15 -11.97 -49.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.036 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds