Wall clock time and date at job start Sat Apr 11 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35042 * 126.39529 * 2 1 4 4 N 1.30496 * 108.69987 * 180.02562 * 3 2 1 5 5 C 1.34135 * 109.25351 * 359.97438 * 4 3 2 6 6 S 1.76198 * 125.98646 * 180.02562 * 5 4 3 7 7 O 1.42102 * 106.40369 * 336.48391 * 6 5 4 8 8 O 1.42099 * 106.40212 * 203.56130 * 6 5 4 9 9 N 1.65601 * 107.21939 * 90.02541 * 6 5 4 10 10 C 1.47545 * 125.65749 * 269.97335 * 9 6 5 11 11 C 1.55151 * 105.01071 * 203.93697 * 10 9 6 12 12 C 1.53930 * 101.42985 * 324.37435 * 11 10 9 13 13 C 1.52564 * 115.95581 * 163.58104 * 12 11 10 14 14 N 1.48237 * 85.72871 * 94.88211 * 13 12 11 15 15 C 1.46895 * 111.00089 * 136.67803 * 14 13 12 16 16 C 1.50708 * 109.47012 * 70.34151 * 15 14 13 17 17 H 1.07998 * 119.99386 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00210 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99707 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99892 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47174 * 90.00430 * 20 18 16 22 22 H 1.48500 * 109.47213 * 209.99779 * 20 18 16 23 23 H 1.48497 * 109.47493 * 330.00062 * 20 18 16 24 24 C 1.48231 * 91.01946 * 23.67925 * 14 13 12 25 25 C 1.47360 * 125.66123 * 89.99613 * 9 6 5 26 26 C 1.34659 * 108.02089 * 0.26172 * 5 4 3 27 27 H 1.09004 * 109.46942 * 89.97672 * 1 2 3 28 28 H 1.08997 * 109.47124 * 209.97692 * 1 2 3 29 29 H 1.08998 * 109.47104 * 329.97865 * 1 2 3 30 30 H 1.08004 * 125.65122 * 0.04485 * 3 2 1 31 31 H 1.08995 * 110.33467 * 322.82041 * 10 9 6 32 32 H 1.08996 * 110.33284 * 84.94980 * 10 9 6 33 33 H 1.08995 * 111.03628 * 82.38419 * 11 10 9 34 34 H 1.08998 * 111.03846 * 206.28466 * 11 10 9 35 35 H 1.09004 * 113.83236 * 209.07801 * 13 12 11 36 36 H 1.08996 * 113.83672 * 340.68280 * 13 12 11 37 37 H 1.09000 * 109.46904 * 190.33764 * 15 14 13 38 38 H 1.08995 * 109.47607 * 310.34417 * 15 14 13 39 39 H 0.97006 * 119.99603 * 180.02562 * 19 18 16 40 40 H 1.09005 * 113.82908 * 222.11744 * 24 14 13 41 41 H 1.08999 * 113.94481 * 90.53334 * 24 14 13 42 42 H 1.09002 * 109.98296 * 297.30009 * 25 9 6 43 43 H 1.09004 * 109.98407 * 58.56038 * 25 9 6 44 44 H 1.08007 * 126.59332 * 179.69847 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6904 -0.0006 5 6 3.5460 -0.6505 -0.0004 6 16 4.9994 -1.6467 -0.0003 7 8 6.0370 -0.8426 -0.5444 8 8 4.6239 -2.9043 -0.5450 9 7 5.4034 -1.9242 1.5815 10 6 6.2915 -1.0798 2.4033 11 6 6.8321 -2.0232 3.5100 12 6 5.6091 -2.9212 3.7695 13 6 5.8818 -4.2193 4.5233 14 7 5.5027 -3.4625 5.7402 15 6 4.6308 -4.2646 6.6087 16 6 5.4297 -5.3822 7.2283 17 1 6.4802 -5.4859 7.0000 18 6 4.8198 -6.2716 8.0873 19 7 3.5407 -6.1450 8.3656 20 14 5.8100 -7.6573 8.8547 21 1 6.3911 -7.1968 10.1414 22 1 4.9226 -8.8222 9.1012 23 1 6.9034 -8.0545 7.9317 24 6 4.7111 -2.5057 4.9308 25 6 4.9360 -3.0556 2.4018 26 6 2.2773 -1.1017 -0.0055 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 1.9334 2.1145 0.0007 31 1 7.1131 -0.6945 1.7995 32 1 5.7294 -0.2574 2.8457 33 1 7.6767 -2.6086 3.1469 34 1 7.1032 -1.4622 4.4043 35 1 5.1927 -5.0264 4.2741 36 1 6.9268 -4.5284 4.5046 37 1 4.2204 -3.6318 7.3956 38 1 3.8164 -4.6843 6.0182 39 1 3.1117 -6.7706 8.9703 40 1 4.8347 -1.4657 5.2328 41 1 3.6669 -2.7915 4.8041 42 1 3.8527 -3.0120 2.5139 43 1 5.2245 -3.9978 1.9357 44 1 1.9613 -2.1345 -0.0113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277941643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:36 Heat of formation + Delta-G solvation = 8.150645 kcal Electronic energy + Delta-G solvation = -27737.600395 eV Core-core repulsion = 23818.371008 eV Total energy + Delta-G solvation = -3919.229387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.19608 -41.55838 -38.32986 -37.81821 -36.97845 -35.14410 -34.96358 -31.96736 -30.99614 -30.43536 -28.63385 -28.09122 -27.04151 -25.54336 -23.60943 -23.23322 -22.46945 -22.30497 -20.05349 -19.62404 -18.99366 -18.54347 -18.37811 -17.18520 -16.94203 -16.78685 -16.62319 -16.24662 -16.13396 -15.81841 -15.26212 -15.10617 -14.88875 -14.73676 -14.06607 -14.00325 -13.95600 -13.85410 -13.61190 -13.54393 -13.33550 -13.23710 -13.11574 -12.84521 -12.73624 -12.68802 -12.43099 -12.40788 -12.14738 -11.80332 -11.38339 -11.27704 -11.25209 -11.00860 -10.89407 -10.61790 -10.13867 -9.98274 -9.43527 -8.21536 -6.31047 -0.69077 0.54927 1.41770 1.42616 1.52781 1.53835 1.72420 2.11782 2.40637 2.74846 3.02726 3.12053 3.20926 3.41287 3.57659 3.79413 3.81798 3.89552 3.94040 4.18727 4.23262 4.37645 4.38942 4.55327 4.60051 4.68446 4.69079 4.70258 4.80636 4.88070 4.89864 4.95645 5.01665 5.08343 5.12637 5.14907 5.18677 5.26317 5.34098 5.45668 5.57897 5.83082 6.01811 6.18080 6.48017 6.67716 6.84865 7.38908 8.90044 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.002737 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.529908 B =10225.973875 C =11070.863157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.452 5.452 3 C 0.190 3.810 4 N -0.464 5.464 5 C -0.589 4.589 6 S 2.758 3.242 7 O -0.978 6.978 8 O -0.975 6.975 9 N -1.006 6.006 10 C 0.121 3.879 11 C -0.092 4.092 12 C -0.082 4.082 13 C 0.032 3.968 14 N -0.490 5.490 15 C 0.177 3.823 16 C -0.525 4.525 17 H 0.060 0.940 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.967 3.033 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.264 1.264 24 C 0.015 3.985 25 C 0.133 3.867 26 C 0.071 3.929 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.253 0.747 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.086 0.914 37 H -0.001 1.001 38 H -0.024 1.024 39 H 0.264 0.736 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 14.307 -18.470 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.130 5.130 3 C -0.096 4.096 4 N -0.181 5.181 5 C -0.801 4.801 6 S 2.849 3.151 7 O -0.968 6.968 8 O -0.965 6.965 9 N -0.846 5.846 10 C -0.004 4.004 11 C -0.131 4.131 12 C -0.084 4.084 13 C -0.097 4.097 14 N -0.213 5.213 15 C 0.050 3.950 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.114 4.114 25 C 0.008 3.992 26 C -0.073 4.073 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.136 0.864 30 H 0.269 0.731 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.017 0.983 38 H -0.006 1.006 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.840 14.727 -18.740 24.539 hybrid contribution -1.962 -1.285 0.591 2.419 sum -7.802 13.442 -18.149 23.894 Atomic orbital electron populations 1.22628 0.72532 1.07302 1.05873 1.46083 1.10137 1.05976 1.50821 1.26140 0.84750 0.95627 1.03128 1.70252 1.21996 1.08413 1.17417 1.33158 1.16865 1.03601 1.26484 0.99740 0.72471 0.71998 0.70902 1.93506 1.55684 1.71273 1.76345 1.93554 1.84942 1.41426 1.76569 1.58487 1.60637 1.35675 1.29781 1.22203 0.92881 0.93122 0.92157 1.22408 0.95708 0.96534 0.98450 1.22336 0.97216 0.96637 0.92190 1.23523 1.01906 0.94628 0.89627 1.68527 1.30449 1.11592 1.10689 1.19847 0.91209 0.91929 0.92064 1.21422 0.96410 1.11574 1.26917 0.92174 1.25883 0.95979 1.00622 0.97043 1.70074 1.11657 1.38750 1.36895 0.85419 0.78467 0.78152 0.78811 1.20016 1.20730 1.18844 1.23797 0.95855 0.99190 0.92597 1.21656 0.98907 0.88773 0.89896 1.23130 0.89177 0.95164 0.99874 0.88244 0.87914 0.86432 0.73125 0.89339 0.90667 0.89390 0.88686 0.92404 0.89600 0.98262 1.00629 0.92694 0.88861 0.92263 0.90585 0.90077 0.76966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.12 11.18 127.77 1.43 1.55 16 2 N -0.45 -5.59 3.15 -552.52 -1.74 -7.33 16 3 C 0.19 2.89 12.56 180.26 2.26 5.15 16 4 N -0.46 -11.42 11.25 -197.78 -2.23 -13.64 16 5 C -0.59 -14.22 7.13 83.52 0.60 -13.62 16 6 S 2.76 74.78 6.09 -56.49 -0.34 74.43 16 7 O -0.98 -32.45 17.35 -128.00 -2.22 -34.67 16 8 O -0.97 -29.08 17.42 -128.00 -2.23 -31.31 16 9 N -1.01 -24.76 3.71 -507.25 -1.88 -26.64 16 10 C 0.12 2.73 7.12 86.92 0.62 3.35 16 11 C -0.09 -2.18 6.42 31.65 0.20 -1.98 16 12 C -0.08 -2.29 0.97 -52.09 -0.05 -2.35 16 13 C 0.03 1.16 6.78 85.90 0.58 1.74 16 14 N -0.49 -20.37 6.25 -935.27 -5.85 -26.22 16 15 C 0.18 9.24 4.58 85.56 0.39 9.63 16 16 C -0.52 -29.53 8.83 25.60 0.23 -29.30 16 17 H 0.06 3.33 7.80 -2.91 -0.02 3.31 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 20 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 24 C 0.01 0.47 7.22 85.90 0.62 1.09 16 25 C 0.13 3.34 6.50 86.22 0.56 3.90 16 26 C 0.07 1.25 11.31 83.08 0.94 2.19 16 27 H 0.10 -0.04 8.14 -2.38 -0.02 -0.06 16 28 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.25 1.38 8.06 -2.91 -0.02 1.35 16 31 H 0.09 1.92 7.78 -2.39 -0.02 1.90 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 2.21 8.06 -2.39 -0.02 2.19 16 35 H 0.06 2.20 7.79 -2.38 -0.02 2.18 16 36 H 0.09 2.95 8.12 -2.39 -0.02 2.93 16 37 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H -0.02 -1.33 7.71 -2.39 -0.02 -1.35 16 39 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 40 H 0.09 2.76 8.12 -2.38 -0.02 2.74 16 41 H 0.06 1.97 7.66 -2.39 -0.02 1.96 16 42 H 0.08 1.73 7.86 -2.39 -0.02 1.71 16 43 H 0.08 2.02 8.09 -2.39 -0.02 2.00 16 44 H 0.21 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -81.70 377.71 -4.34 -86.05 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.99 Total: 6.60 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 8.84 Total: -18.01 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -11.41 Total: -129.14 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -4.45 Total: -65.98 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 74.78 SS G_CDS: -0.34 Total: 74.43 kcal Total: -81.70 -4.34 -86.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.197 kcal (2) G-P(sol) polarization free energy of solvation -81.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds