Wall clock time and date at job start Sat Apr 11 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35038 * 126.40205 * 2 1 4 4 N 1.30499 * 108.70354 * 180.02562 * 3 2 1 5 5 C 1.34124 * 109.25633 * 0.02562 * 4 3 2 6 6 S 1.76197 * 125.98836 * 180.02562 * 5 4 3 7 7 O 1.42099 * 106.40269 * 336.48330 * 6 5 4 8 8 O 1.42105 * 106.39848 * 203.56342 * 6 5 4 9 9 N 1.65601 * 107.22047 * 90.02650 * 6 5 4 10 10 C 1.47838 * 134.33841 * 89.99082 * 9 6 5 11 11 C 1.52700 * 85.65201 * 156.32504 * 10 9 6 12 12 C 1.52266 * 122.15407 * 149.99117 * 11 10 9 13 13 N 1.47731 * 87.55209 * 150.27873 * 12 11 10 14 14 C 1.46906 * 110.99912 * 222.27574 * 13 12 11 15 15 C 1.52993 * 109.47378 * 170.00308 * 14 13 12 16 16 C 1.50696 * 109.47429 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00355 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99771 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47174 * 89.99890 * 20 18 16 22 22 H 1.48501 * 109.47062 * 209.99841 * 20 18 16 23 23 H 1.48503 * 109.47284 * 329.99536 * 20 18 16 24 24 C 1.47728 * 88.19727 * 334.10902 * 13 12 11 25 25 C 1.47844 * 134.33506 * 269.97483 * 9 6 5 26 26 C 1.34667 * 108.02050 * 0.26205 * 5 4 3 27 27 H 1.09006 * 109.47141 * 89.97539 * 1 2 3 28 28 H 1.08997 * 109.47382 * 209.96846 * 1 2 3 29 29 H 1.08994 * 109.46918 * 329.97469 * 1 2 3 30 30 H 1.08000 * 125.64689 * 0.05428 * 3 2 1 31 31 H 1.09001 * 113.83928 * 42.14773 * 10 9 6 32 32 H 1.08993 * 113.96244 * 270.51428 * 10 9 6 33 33 H 1.09006 * 113.53610 * 35.61111 * 12 11 10 34 34 H 1.08993 * 113.53718 * 264.95112 * 12 11 10 35 35 H 1.09004 * 109.47040 * 290.00096 * 14 13 12 36 36 H 1.09000 * 109.47033 * 50.00048 * 14 13 12 37 37 H 1.09004 * 109.46862 * 299.99897 * 15 14 13 38 38 H 1.09004 * 109.46998 * 59.99419 * 15 14 13 39 39 H 0.97000 * 119.99584 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.53063 * 140.55892 * 24 13 12 41 41 H 1.08999 * 113.54060 * 271.21565 * 24 13 12 42 42 H 1.08997 * 113.84555 * 89.49366 * 25 9 6 43 43 H 1.09000 * 113.84296 * 317.86021 * 25 9 6 44 44 H 1.08002 * 126.59085 * 179.69695 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 -0.0006 5 6 3.5460 -0.6506 -0.0015 6 16 4.9993 -1.6468 -0.0019 7 8 6.0372 -0.8424 -0.5450 8 8 4.6238 -2.9039 -0.5478 9 7 5.4029 -1.9257 1.5798 10 6 5.0568 -2.9718 2.5655 11 6 6.3598 -2.5842 3.2608 12 6 6.5439 -2.7123 4.7669 13 7 7.9809 -2.9368 4.5084 14 6 8.5056 -4.0169 5.3547 15 6 9.9152 -4.3893 4.8909 16 6 10.4536 -5.4969 5.7595 17 1 9.8505 -5.8956 6.5618 18 6 11.7157 -6.0019 5.5293 19 7 12.1858 -6.9681 6.2876 20 14 12.7585 -5.3128 4.1410 21 1 13.5745 -4.1811 4.6497 22 1 13.6559 -6.3758 3.6214 23 1 11.8742 -4.8337 3.0484 24 6 7.6133 -3.4438 3.1704 25 6 6.2530 -1.2278 2.5677 26 6 2.2772 -1.1018 -0.0074 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5133 29 1 -0.3633 0.8897 0.5142 30 1 1.9335 2.1143 0.0008 31 1 5.0597 -3.9817 2.1554 32 1 4.1633 -2.7514 3.1495 33 1 6.0382 -3.5778 5.1952 34 1 6.3382 -1.7902 5.3105 35 1 8.5409 -3.6816 6.3913 36 1 7.8553 -4.8882 5.2766 37 1 9.8798 -4.7246 3.8543 38 1 10.5654 -3.5180 4.9690 39 1 13.0739 -7.3231 6.1257 40 1 8.2994 -3.1316 2.3831 41 1 7.4069 -4.5140 3.1520 42 1 5.7231 -0.4752 3.1515 43 1 7.1967 -0.8660 2.1595 44 1 1.9613 -2.1346 -0.0142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277945133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:48 Heat of formation + Delta-G solvation = 72.506462 kcal Electronic energy + Delta-G solvation = -27054.388604 eV Core-core repulsion = 23137.949895 eV Total energy + Delta-G solvation = -3916.438709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.65413 -40.93682 -37.22681 -37.17342 -35.87942 -34.71424 -33.27934 -31.12973 -30.39276 -28.11474 -27.81910 -26.50618 -25.93883 -25.25752 -22.80717 -22.28887 -21.95209 -20.03728 -19.11603 -18.37567 -18.27159 -17.38053 -16.78555 -16.41823 -16.31087 -16.11295 -15.52698 -15.21636 -14.89845 -14.76302 -14.55088 -14.16519 -13.89982 -13.72311 -13.60777 -13.49185 -13.07515 -12.74581 -12.56164 -12.36030 -12.16628 -12.08171 -11.90159 -11.77695 -11.35684 -11.10925 -10.90545 -10.76166 -10.62319 -10.44604 -10.29604 -10.03442 -9.71481 -9.64782 -9.51205 -9.23873 -9.16195 -8.51391 -8.41629 -6.01869 -4.00259 0.22691 1.13847 2.06495 2.16832 2.87148 3.37170 3.44144 3.50031 3.68406 3.78453 4.02194 4.09594 4.17469 4.32186 4.33134 4.35965 4.49921 4.52198 4.64263 4.65312 4.72889 5.19002 5.29822 5.33126 5.40303 5.49131 5.51479 5.60210 5.67907 5.70188 5.78086 5.87076 5.90254 5.96308 6.11353 6.21268 6.39865 6.43772 6.68123 6.87975 7.16385 7.25952 7.42158 7.60108 7.84831 8.54686 9.01675 9.60918 11.11300 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.002268 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.797548 B =12342.523833 C =12794.791262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.459 5.459 3 C 0.182 3.818 4 N -0.414 5.414 5 C -0.561 4.561 6 S 2.738 3.262 7 O -0.938 6.938 8 O -0.954 6.954 9 N -1.029 6.029 10 C 0.139 3.861 11 C -0.123 4.123 12 C 0.014 3.986 13 N -0.473 5.473 14 C 0.037 3.963 15 C -0.007 4.007 16 C -0.522 4.522 17 H 0.070 0.930 18 C 0.067 3.933 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.264 1.264 24 C 0.028 3.972 25 C 0.164 3.836 26 C 0.064 3.936 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.215 0.785 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.015 0.985 38 H 0.020 0.980 39 H 0.263 0.737 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.557 15.411 -11.518 35.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.139 5.139 3 C -0.103 4.103 4 N -0.130 5.130 5 C -0.771 4.771 6 S 2.826 3.174 7 O -0.928 6.928 8 O -0.944 6.944 9 N -0.868 5.868 10 C 0.013 3.987 11 C -0.127 4.127 12 C -0.116 4.116 13 N -0.195 5.195 14 C -0.091 4.091 15 C -0.045 4.045 16 C -0.560 4.560 17 H 0.088 0.912 18 C -0.134 4.134 19 N -0.543 5.543 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.189 1.189 24 C -0.100 4.100 25 C 0.039 3.961 26 C -0.077 4.077 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.232 0.768 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.033 0.967 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -28.007 16.133 -12.368 34.607 hybrid contribution -1.505 -0.494 -0.402 1.634 sum -29.512 15.639 -12.770 35.758 Atomic orbital electron populations 1.22230 0.75567 1.05475 1.04384 1.45813 1.08414 1.07070 1.52586 1.25432 0.85583 0.93940 1.05373 1.70356 1.19408 1.08263 1.14971 1.33817 1.16863 1.03344 1.23093 1.00838 0.72484 0.72617 0.71491 1.93578 1.53528 1.70470 1.75254 1.93590 1.84625 1.40433 1.75743 1.60361 1.61110 1.37802 1.27571 1.22636 0.97225 0.91879 0.86956 1.23042 0.95792 0.97528 0.96327 1.23595 0.91799 1.02145 0.94074 1.69023 1.12817 1.34847 1.02786 1.22652 0.98515 0.90783 0.97166 1.19503 0.91587 0.96695 0.96722 1.21071 1.01017 1.17724 1.16196 0.91151 1.25002 0.97668 0.94618 0.96118 1.69915 1.17994 1.27044 1.39341 0.86753 0.80440 0.78738 0.83228 1.20229 1.21505 1.18861 1.23464 0.93722 0.97866 0.94988 1.22366 0.94007 0.93802 0.85914 1.22756 0.89618 0.93598 1.01718 0.89776 0.88974 0.88712 0.76838 0.89148 0.89595 0.90888 0.89686 0.91175 0.94629 0.96656 0.96154 0.92745 0.89511 0.90357 0.89421 0.88746 0.78986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.07 11.18 59.85 0.67 0.74 16 2 N -0.46 -2.72 3.15 -126.00 -0.40 -3.11 16 3 C 0.18 1.37 12.56 -90.38 -1.14 0.24 16 4 N -0.41 -4.91 11.25 -13.87 -0.16 -5.07 16 5 C -0.56 -6.31 7.13 -17.81 -0.13 -6.43 16 6 S 2.74 35.35 6.39 -107.50 -0.69 34.67 16 7 O -0.94 -15.65 17.99 -57.17 -1.03 -16.68 16 8 O -0.95 -13.58 17.81 -57.17 -1.02 -14.60 16 9 N -1.03 -11.42 4.12 -125.38 -0.52 -11.93 16 10 C 0.14 1.28 8.79 -3.46 -0.03 1.25 16 11 C -0.12 -1.40 1.46 -155.87 -0.23 -1.63 16 12 C 0.01 0.17 7.54 -6.67 -0.05 0.12 16 13 N -0.47 -7.75 6.41 -244.56 -1.57 -9.31 16 14 C 0.04 0.72 4.76 -3.82 -0.02 0.70 16 15 C -0.01 -0.18 4.14 -27.89 -0.12 -0.29 16 16 C -0.52 -14.93 9.66 -34.44 -0.33 -15.27 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 20 Si 0.88 22.30 27.47 -169.99 -4.67 17.64 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 24 C 0.03 0.42 6.81 -6.67 -0.05 0.38 16 25 C 0.16 1.78 8.79 -3.46 -0.03 1.75 16 26 C 0.06 0.52 11.31 -16.56 -0.19 0.33 16 27 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 29 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.22 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.82 7.77 -51.93 -0.40 0.41 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.04 0.68 7.59 -51.93 -0.39 0.29 16 37 H 0.02 0.37 6.71 -51.93 -0.35 0.02 16 38 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.15 7.71 -51.93 -0.40 0.75 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.19 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -39.75 380.08 -11.87 -51.61 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -6.60 Total: -5.37 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -1.73 Total: -16.24 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -1.86 Total: -56.75 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -2.05 Total: -31.28 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.64 kcal Atomic # 16 Polarization: 35.35 SS G_CDS: -0.69 Total: 34.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.75 -11.87 -51.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277945133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.117 kcal (2) G-P(sol) polarization free energy of solvation -39.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds