Wall clock time and date at job start Sat Apr 11 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35038 * 126.40205 * 2 1 4 4 N 1.30499 * 108.70354 * 180.02562 * 3 2 1 5 5 C 1.34124 * 109.25633 * 0.02562 * 4 3 2 6 6 S 1.76197 * 125.98836 * 180.02562 * 5 4 3 7 7 O 1.42099 * 106.40269 * 336.48330 * 6 5 4 8 8 O 1.42105 * 106.39848 * 203.56342 * 6 5 4 9 9 N 1.65601 * 107.22047 * 90.02650 * 6 5 4 10 10 C 1.47838 * 134.33841 * 89.99082 * 9 6 5 11 11 C 1.52700 * 85.65201 * 156.32504 * 10 9 6 12 12 C 1.52266 * 122.15407 * 149.99117 * 11 10 9 13 13 N 1.47731 * 87.55209 * 150.27873 * 12 11 10 14 14 C 1.46906 * 110.99912 * 222.27574 * 13 12 11 15 15 C 1.52993 * 109.47378 * 170.00308 * 14 13 12 16 16 C 1.50696 * 109.47429 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00355 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99771 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47174 * 89.99890 * 20 18 16 22 22 H 1.48501 * 109.47062 * 209.99841 * 20 18 16 23 23 H 1.48503 * 109.47284 * 329.99536 * 20 18 16 24 24 C 1.47728 * 88.19727 * 334.10902 * 13 12 11 25 25 C 1.47844 * 134.33506 * 269.97483 * 9 6 5 26 26 C 1.34667 * 108.02050 * 0.26205 * 5 4 3 27 27 H 1.09006 * 109.47141 * 89.97539 * 1 2 3 28 28 H 1.08997 * 109.47382 * 209.96846 * 1 2 3 29 29 H 1.08994 * 109.46918 * 329.97469 * 1 2 3 30 30 H 1.08000 * 125.64689 * 0.05428 * 3 2 1 31 31 H 1.09001 * 113.83928 * 42.14773 * 10 9 6 32 32 H 1.08993 * 113.96244 * 270.51428 * 10 9 6 33 33 H 1.09006 * 113.53610 * 35.61111 * 12 11 10 34 34 H 1.08993 * 113.53718 * 264.95112 * 12 11 10 35 35 H 1.09004 * 109.47040 * 290.00096 * 14 13 12 36 36 H 1.09000 * 109.47033 * 50.00048 * 14 13 12 37 37 H 1.09004 * 109.46862 * 299.99897 * 15 14 13 38 38 H 1.09004 * 109.46998 * 59.99419 * 15 14 13 39 39 H 0.97000 * 119.99584 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.53063 * 140.55892 * 24 13 12 41 41 H 1.08999 * 113.54060 * 271.21565 * 24 13 12 42 42 H 1.08997 * 113.84555 * 89.49366 * 25 9 6 43 43 H 1.09000 * 113.84296 * 317.86021 * 25 9 6 44 44 H 1.08002 * 126.59085 * 179.69695 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 -0.0006 5 6 3.5460 -0.6506 -0.0015 6 16 4.9993 -1.6468 -0.0019 7 8 6.0372 -0.8424 -0.5450 8 8 4.6238 -2.9039 -0.5478 9 7 5.4029 -1.9257 1.5798 10 6 5.0568 -2.9718 2.5655 11 6 6.3598 -2.5842 3.2608 12 6 6.5439 -2.7123 4.7669 13 7 7.9809 -2.9368 4.5084 14 6 8.5056 -4.0169 5.3547 15 6 9.9152 -4.3893 4.8909 16 6 10.4536 -5.4969 5.7595 17 1 9.8505 -5.8956 6.5618 18 6 11.7157 -6.0019 5.5293 19 7 12.1858 -6.9681 6.2876 20 14 12.7585 -5.3128 4.1410 21 1 13.5745 -4.1811 4.6497 22 1 13.6559 -6.3758 3.6214 23 1 11.8742 -4.8337 3.0484 24 6 7.6133 -3.4438 3.1704 25 6 6.2530 -1.2278 2.5677 26 6 2.2772 -1.1018 -0.0074 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5133 29 1 -0.3633 0.8897 0.5142 30 1 1.9335 2.1143 0.0008 31 1 5.0597 -3.9817 2.1554 32 1 4.1633 -2.7514 3.1495 33 1 6.0382 -3.5778 5.1952 34 1 6.3382 -1.7902 5.3105 35 1 8.5409 -3.6816 6.3913 36 1 7.8553 -4.8882 5.2766 37 1 9.8798 -4.7246 3.8543 38 1 10.5654 -3.5180 4.9690 39 1 13.0739 -7.3231 6.1257 40 1 8.2994 -3.1316 2.3831 41 1 7.4069 -4.5140 3.1520 42 1 5.7231 -0.4752 3.1515 43 1 7.1967 -0.8660 2.1595 44 1 1.9613 -2.1346 -0.0142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277945133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:47 Heat of formation + Delta-G solvation = 39.998119 kcal Electronic energy + Delta-G solvation = -27055.798272 eV Core-core repulsion = 23137.949895 eV Total energy + Delta-G solvation = -3917.848377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.19613 -41.96054 -38.28950 -38.25985 -36.96031 -35.32737 -35.14313 -32.98457 -30.99022 -29.48812 -28.07920 -27.31453 -27.06054 -26.69624 -23.93090 -23.39977 -22.43866 -21.72403 -19.93031 -19.28212 -18.99178 -18.94049 -18.27930 -17.13992 -17.03241 -16.79260 -16.53153 -16.51118 -16.14116 -15.91822 -15.33936 -15.14033 -15.11880 -14.85971 -14.51219 -14.33134 -13.97198 -13.75837 -13.66801 -13.52360 -13.28782 -13.20451 -13.11648 -13.07119 -12.73768 -12.66004 -12.31733 -12.06720 -11.74754 -11.56789 -11.46031 -11.32450 -11.25802 -11.12207 -10.88954 -10.76605 -10.19994 -9.99941 -9.67081 -8.30276 -6.33526 -0.68401 0.55323 1.35804 1.36953 1.49519 1.51762 1.72648 2.07169 2.35601 2.78042 2.95858 3.05508 3.10269 3.35982 3.57571 3.67141 3.72482 3.87008 3.94643 4.14593 4.22422 4.28766 4.40255 4.46869 4.57451 4.61198 4.64303 4.70779 4.72005 4.81198 4.83981 4.91354 4.97424 5.02369 5.04623 5.10731 5.15829 5.32173 5.36866 5.53417 5.62526 5.65092 6.02049 6.19737 6.30005 6.69335 6.73994 7.31424 8.86030 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.002268 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.797548 B =12342.523833 C =12794.791262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.451 5.451 3 C 0.189 3.811 4 N -0.470 5.470 5 C -0.591 4.591 6 S 2.752 3.248 7 O -0.990 6.990 8 O -0.976 6.976 9 N -1.034 6.034 10 C 0.146 3.854 11 C -0.111 4.111 12 C 0.024 3.976 13 N -0.491 5.491 14 C 0.050 3.950 15 C -0.003 4.003 16 C -0.529 4.529 17 H 0.038 0.962 18 C 0.008 3.992 19 N -0.948 5.948 20 Si 0.947 3.053 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.253 1.253 24 C 0.016 3.984 25 C 0.162 3.838 26 C 0.075 3.925 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.251 0.749 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.014 0.986 38 H 0.014 0.986 39 H 0.266 0.734 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.892 17.018 -12.040 38.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.130 5.130 3 C -0.097 4.097 4 N -0.187 5.187 5 C -0.803 4.803 6 S 2.844 3.156 7 O -0.980 6.980 8 O -0.966 6.966 9 N -0.874 5.874 10 C 0.022 3.978 11 C -0.115 4.115 12 C -0.106 4.106 13 N -0.214 5.214 14 C -0.078 4.078 15 C -0.041 4.041 16 C -0.568 4.568 17 H 0.056 0.944 18 C -0.189 4.189 19 N -0.589 5.589 20 Si 0.771 3.229 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.177 1.177 24 C -0.113 4.113 25 C 0.037 3.963 26 C -0.069 4.069 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.267 0.733 31 H 0.111 0.889 32 H 0.143 0.857 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.133 0.867 43 H 0.095 0.905 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -31.351 17.726 -12.891 38.253 hybrid contribution -0.630 -0.963 -0.189 1.166 sum -31.981 16.763 -13.080 38.404 Atomic orbital electron populations 1.22636 0.72391 1.07485 1.05789 1.46100 1.10160 1.05900 1.50800 1.26116 0.84715 0.95682 1.03214 1.70262 1.22176 1.08744 1.17495 1.33196 1.17019 1.03465 1.26591 0.99871 0.72321 0.71901 0.71528 1.93505 1.56252 1.71458 1.76785 1.93545 1.84970 1.41529 1.76597 1.60195 1.61490 1.38535 1.27202 1.22863 0.97271 0.91670 0.86028 1.22838 0.95397 0.97282 0.95959 1.23664 0.88637 1.03616 0.94673 1.68976 1.16150 1.33209 1.03016 1.22347 0.96076 0.92070 0.97353 1.19391 0.94271 0.94723 0.95671 1.21415 1.00858 1.18657 1.15837 0.94410 1.25915 0.99207 0.94967 0.98815 1.70049 1.18734 1.28673 1.41397 0.85706 0.78770 0.78277 0.80170 1.19325 1.20817 1.17718 1.23539 0.95489 0.98518 0.93789 1.22493 0.93776 0.94159 0.85828 1.23145 0.88880 0.95185 0.99679 0.88615 0.87394 0.86429 0.73293 0.88875 0.85733 0.89479 0.87651 0.91694 0.94468 0.96810 0.96728 0.92470 0.91104 0.90515 0.86722 0.90543 0.76506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.13 11.18 127.77 1.43 1.30 16 2 N -0.45 -3.84 3.15 -552.54 -1.74 -5.58 16 3 C 0.19 2.36 12.56 180.26 2.26 4.63 16 4 N -0.47 -10.68 11.25 -197.78 -2.23 -12.91 16 5 C -0.59 -12.69 7.13 83.52 0.60 -12.09 16 6 S 2.75 71.55 6.39 -56.49 -0.36 71.19 16 7 O -0.99 -34.65 17.99 -128.00 -2.30 -36.95 16 8 O -0.98 -27.80 17.81 -128.00 -2.28 -30.08 16 9 N -1.03 -21.81 4.12 -550.59 -2.27 -24.08 16 10 C 0.15 2.30 8.79 86.02 0.76 3.06 16 11 C -0.11 -2.31 1.46 -52.77 -0.08 -2.39 16 12 C 0.02 0.51 7.54 84.00 0.63 1.14 16 13 N -0.49 -15.60 6.41 -927.66 -5.95 -21.54 16 14 C 0.05 1.94 4.76 86.30 0.41 2.35 16 15 C 0.00 -0.14 4.14 29.84 0.12 -0.01 16 16 C -0.53 -31.01 9.66 25.60 0.25 -30.76 16 17 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 18 C 0.01 0.48 5.47 84.65 0.46 0.95 16 19 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 20 Si 0.95 46.37 27.47 68.60 1.88 48.25 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.25 -11.85 6.54 99.48 0.65 -11.20 16 24 C 0.02 0.45 6.81 84.00 0.57 1.03 16 25 C 0.16 3.31 8.79 86.02 0.76 4.07 16 26 C 0.08 1.02 11.31 83.08 0.94 1.96 16 27 H 0.10 -0.36 8.14 -2.38 -0.02 -0.38 16 28 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.25 0.78 8.06 -2.91 -0.02 0.75 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.67 7.77 -2.38 -0.02 1.65 16 34 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.04 1.41 7.59 -2.39 -0.02 1.39 16 37 H 0.01 0.66 6.71 -2.38 -0.02 0.65 16 38 H 0.01 0.71 7.57 -2.39 -0.02 0.70 16 39 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.08 2.23 7.71 -2.39 -0.02 2.21 16 42 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.22 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -90.20 380.08 -4.88 -95.08 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 0.94 Total: 1.31 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 9.11 Total: -24.77 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -11.88 Total: -124.04 kcal Atomic # 8 Polarization: -62.45 SS G_CDS: -4.58 Total: -67.03 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.88 Total: 48.25 kcal Atomic # 16 Polarization: 71.55 SS G_CDS: -0.36 Total: 71.19 kcal Total: -90.20 -4.88 -95.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277945133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.081 kcal (2) G-P(sol) polarization free energy of solvation -90.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds