Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00376 * 2 1 4 4 C 1.53011 * 109.47162 * 270.00208 * 3 2 1 5 5 N 1.46493 * 109.47278 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00203 * 270.00356 * 5 4 3 7 7 C 1.34776 * 120.00060 * 90.00004 * 5 4 3 8 8 O 1.21572 * 119.99782 * 354.50042 * 7 5 4 9 9 C 1.47710 * 120.00161 * 174.23131 * 7 5 4 10 10 C 1.41501 * 126.51550 * 174.29549 * 9 7 5 11 11 C 1.35368 * 105.50215 * 179.84024 * 10 9 7 12 12 N 1.35038 * 107.22704 * 0.40982 * 11 10 9 13 13 C 1.46500 * 124.88753 * 179.70809 * 12 11 10 14 14 N 1.28467 * 110.23107 * 359.72859 * 12 11 10 15 15 C 1.34781 * 119.99927 * 179.97438 * 2 1 3 16 16 O 1.21283 * 119.99922 * 179.97438 * 15 2 1 17 17 C 1.50702 * 119.99755 * 0.02562 * 15 2 1 18 18 S 1.81002 * 109.46813 * 180.02562 * 17 15 2 19 19 C 1.76203 * 99.99754 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99800 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99769 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00462 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47023 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47202 * 119.99730 * 23 21 19 26 26 H 1.48496 * 109.47146 * 240.00184 * 23 21 19 27 27 H 1.08998 * 109.47062 * 89.99517 * 1 2 3 28 28 H 1.08994 * 109.47158 * 210.00414 * 1 2 3 29 29 H 1.09004 * 109.46768 * 330.00141 * 1 2 3 30 30 H 1.08998 * 109.47707 * 150.00228 * 3 2 1 31 31 H 1.09002 * 109.46906 * 29.99749 * 3 2 1 32 32 H 1.08998 * 109.46793 * 59.99460 * 4 3 2 33 33 H 1.08998 * 109.46971 * 300.00080 * 4 3 2 34 34 H 1.09000 * 109.46880 * 265.23648 * 6 5 4 35 35 H 1.09000 * 109.47203 * 25.23596 * 6 5 4 36 36 H 1.08994 * 109.47193 * 145.24302 * 6 5 4 37 37 H 1.08001 * 127.25132 * 359.97173 * 10 9 7 38 38 H 1.07999 * 126.39310 * 180.14088 * 11 10 9 39 39 H 1.09003 * 109.46792 * 270.00139 * 13 12 11 40 40 H 1.09001 * 109.47114 * 29.99282 * 13 12 11 41 41 H 1.08997 * 109.47284 * 149.99890 * 13 12 11 42 42 H 1.09001 * 109.46819 * 299.99381 * 17 15 2 43 43 H 1.08998 * 109.47295 * 59.99512 * 17 15 2 44 44 H 0.97003 * 120.00618 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4426 5 7 3.1846 2.9793 -1.4426 6 6 2.4517 4.2478 -1.4427 7 6 4.5324 2.9798 -1.4425 8 8 5.1405 1.9320 -1.3415 9 6 5.2705 4.2528 -1.5711 10 6 6.6714 4.4272 -1.4750 11 6 6.8848 5.7509 -1.6609 12 7 5.6783 6.3283 -1.8468 13 6 5.4605 7.7585 -2.0777 14 7 4.7490 5.4430 -1.7917 15 6 2.1389 -1.1673 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3853 -2.4723 0.0005 18 16 2.5615 -3.8481 0.0020 19 6 1.4413 -5.2082 0.0026 20 1 0.3760 -5.0304 0.0016 21 6 1.9281 -6.5080 0.0032 22 7 3.2264 -6.7247 0.0029 23 14 0.7405 -7.9500 0.0030 24 1 -0.6549 -7.4421 0.0015 25 1 0.9668 -8.7775 -1.2091 26 1 0.9656 -8.7767 1.2159 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.1500 1.1384 0.5138 31 1 1.6085 2.0283 0.5138 32 1 1.5001 1.8407 -1.9564 33 1 3.0416 0.9507 -1.9564 34 1 2.3439 4.6050 -2.4669 35 1 1.4650 4.0974 -1.0046 36 1 3.0009 4.9848 -0.8569 37 1 7.4142 3.6644 -1.2937 38 1 7.8412 6.2526 -1.6566 39 1 5.3224 8.2639 -1.1218 40 1 6.3256 8.1798 -2.5898 41 1 4.5714 7.8959 -2.6931 42 1 0.7584 -2.5298 0.8904 43 1 0.7589 -2.5302 -0.8896 44 1 3.5666 -7.6332 0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582936621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = 36.015704 kcal Electronic energy + Delta-G solvation = -26483.091994 eV Core-core repulsion = 22565.070926 eV Total energy + Delta-G solvation = -3918.021067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.93494 -39.85123 -39.06351 -36.04333 -34.98790 -33.81415 -32.36743 -31.35507 -30.66931 -28.67061 -27.74567 -26.85186 -26.17544 -25.42394 -23.87355 -22.08761 -21.70231 -19.48772 -19.10558 -17.71829 -17.57202 -16.87431 -16.69244 -16.57749 -16.15690 -15.76441 -15.20751 -14.83776 -14.74914 -14.32416 -14.05662 -13.80641 -13.43463 -13.41922 -13.35977 -13.12194 -13.01104 -12.94662 -12.82350 -12.53591 -12.48681 -12.38049 -12.16881 -11.74902 -11.02770 -11.00631 -10.95369 -10.92566 -10.69389 -10.11466 -9.73350 -9.54631 -9.35323 -9.24862 -9.02152 -9.00771 -8.29985 -8.12789 -6.42247 -6.15201 -3.85210 1.34947 1.88271 2.09082 2.71479 3.14735 3.19354 3.25748 3.31149 3.33171 3.37409 3.72705 3.96268 4.26100 4.40370 4.47434 4.53374 4.79818 4.81209 4.92894 5.00353 5.10360 5.14114 5.17589 5.19586 5.36355 5.38559 5.42234 5.50339 5.52069 5.63768 5.65685 5.73282 5.90191 5.97955 6.04933 6.11969 6.20815 6.36589 6.43553 6.75974 7.22602 7.56908 7.62184 7.65902 8.14307 8.41455 8.68967 9.29746 10.92204 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.001987 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.865644 B =14089.237111 C =14935.116036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.625 5.625 3 C 0.106 3.894 4 C 0.104 3.896 5 N -0.607 5.607 6 C 0.087 3.913 7 C 0.594 3.406 8 O -0.508 6.508 9 C -0.011 4.011 10 C -0.176 4.176 11 C -0.020 4.020 12 N -0.291 5.291 13 C 0.087 3.913 14 N -0.261 5.261 15 C 0.528 3.472 16 O -0.501 6.501 17 C -0.149 4.149 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.164 0.836 38 H 0.182 0.818 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 33.555 -3.705 33.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C -0.018 4.018 4 C -0.020 4.020 5 N -0.341 5.341 6 C -0.056 4.056 7 C 0.380 3.620 8 O -0.380 6.380 9 C -0.171 4.171 10 C -0.204 4.204 11 C -0.162 4.162 12 N -0.079 5.079 13 C -0.053 4.053 14 N -0.098 5.098 15 C 0.315 3.685 16 O -0.374 6.374 17 C -0.299 4.299 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.182 0.818 38 H 0.199 0.801 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.281 33.520 -3.838 33.740 hybrid contribution -1.553 -1.035 0.064 1.868 sum -1.835 32.485 -3.773 32.754 Atomic orbital electron populations 1.21776 0.79672 1.03098 1.01672 1.47811 1.06710 1.05487 1.76252 1.21696 0.98569 0.84851 0.96717 1.21906 0.96684 0.85365 0.98065 1.47592 1.05353 1.07474 1.73715 1.21918 0.96418 0.85000 1.02314 1.17046 0.81497 0.86446 0.77014 1.90933 1.67595 1.31254 1.48224 1.21963 0.93621 0.91816 1.09714 1.21853 0.95353 0.95944 1.07257 1.22869 0.91257 0.94118 1.07999 1.45517 1.04028 1.08330 1.50000 1.22158 1.04948 0.74488 1.03716 1.73712 1.18417 0.98073 1.19574 1.20404 0.88092 0.84525 0.75461 1.90765 1.13508 1.86545 1.46549 1.23553 1.04493 0.97262 1.04625 1.85484 1.07989 0.93290 1.96662 1.22909 0.94353 0.92271 1.58707 0.90928 1.24993 0.95643 0.98368 0.94648 1.70034 1.11715 1.21489 1.46980 0.86124 0.80354 0.81190 0.77854 1.19649 1.20609 1.20607 0.92824 0.90576 0.91525 0.89311 0.91025 0.90385 0.89035 0.92554 0.91550 0.89907 0.81846 0.80090 0.89733 0.88662 0.88582 0.89326 0.89310 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.29 59.85 0.62 1.48 16 2 N -0.63 -9.44 2.87 -181.57 -0.52 -9.96 16 3 C 0.11 1.47 5.77 -4.04 -0.02 1.44 16 4 C 0.10 1.37 5.67 -4.04 -0.02 1.34 16 5 N -0.61 -7.56 2.87 -182.75 -0.53 -8.08 16 6 C 0.09 0.74 9.32 59.85 0.56 1.30 16 7 C 0.59 9.02 7.66 -12.39 -0.09 8.93 16 8 O -0.51 -9.99 16.57 5.30 0.09 -9.90 16 9 C -0.01 -0.14 6.76 -82.77 -0.56 -0.70 16 10 C -0.18 -1.90 10.81 -39.36 -0.43 -2.32 16 11 C -0.02 -0.14 11.46 -17.16 -0.20 -0.34 16 12 N -0.29 -2.08 3.70 -68.13 -0.25 -2.33 16 13 C 0.09 0.18 11.31 59.85 0.68 0.86 16 14 N -0.26 -2.61 8.74 33.42 0.29 -2.32 16 15 C 0.53 10.78 7.69 -10.98 -0.08 10.69 16 16 O -0.50 -12.52 15.44 5.55 0.09 -12.44 16 17 C -0.15 -3.17 4.71 36.01 0.17 -3.00 16 18 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 19 C -0.53 -15.60 9.50 30.94 0.29 -15.31 16 20 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.82 13.22 55.49 0.73 -26.08 16 23 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.83 6.44 -51.93 -0.33 0.49 16 29 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 30 H 0.09 1.55 7.42 -51.93 -0.39 1.16 16 31 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 32 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.09 1.56 7.50 -51.93 -0.39 1.17 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.43 8.04 -51.93 -0.42 0.01 16 36 H 0.08 0.72 5.91 -51.93 -0.31 0.42 16 37 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.09 -0.02 8.13 -51.93 -0.42 -0.45 16 41 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.09 1.73 7.40 -51.91 -0.38 1.35 16 43 H 0.09 1.74 8.11 -51.92 -0.42 1.32 16 44 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 388.91 15.07 5.86 5.86 Total: -1.00 -40.91 388.91 -7.04 -47.95 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.38 Total: -1.99 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 0.81 Total: 6.40 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.27 Total: -48.78 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.17 Total: -22.34 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -40.91 -7.04 -47.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582936621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.968 kcal (2) G-P(sol) polarization free energy of solvation -40.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds