Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00376 * 2 1 4 4 C 1.53011 * 109.47162 * 270.00208 * 3 2 1 5 5 N 1.46493 * 109.47278 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00203 * 270.00356 * 5 4 3 7 7 C 1.34776 * 120.00060 * 90.00004 * 5 4 3 8 8 O 1.21572 * 119.99782 * 354.50042 * 7 5 4 9 9 C 1.47710 * 120.00161 * 174.23131 * 7 5 4 10 10 C 1.41501 * 126.51550 * 174.29549 * 9 7 5 11 11 C 1.35368 * 105.50215 * 179.84024 * 10 9 7 12 12 N 1.35038 * 107.22704 * 0.40982 * 11 10 9 13 13 C 1.46500 * 124.88753 * 179.70809 * 12 11 10 14 14 N 1.28467 * 110.23107 * 359.72859 * 12 11 10 15 15 C 1.34781 * 119.99927 * 179.97438 * 2 1 3 16 16 O 1.21283 * 119.99922 * 179.97438 * 15 2 1 17 17 C 1.50702 * 119.99755 * 0.02562 * 15 2 1 18 18 S 1.81002 * 109.46813 * 180.02562 * 17 15 2 19 19 C 1.76203 * 99.99754 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99800 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99769 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00462 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47023 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47202 * 119.99730 * 23 21 19 26 26 H 1.48496 * 109.47146 * 240.00184 * 23 21 19 27 27 H 1.08998 * 109.47062 * 89.99517 * 1 2 3 28 28 H 1.08994 * 109.47158 * 210.00414 * 1 2 3 29 29 H 1.09004 * 109.46768 * 330.00141 * 1 2 3 30 30 H 1.08998 * 109.47707 * 150.00228 * 3 2 1 31 31 H 1.09002 * 109.46906 * 29.99749 * 3 2 1 32 32 H 1.08998 * 109.46793 * 59.99460 * 4 3 2 33 33 H 1.08998 * 109.46971 * 300.00080 * 4 3 2 34 34 H 1.09000 * 109.46880 * 265.23648 * 6 5 4 35 35 H 1.09000 * 109.47203 * 25.23596 * 6 5 4 36 36 H 1.08994 * 109.47193 * 145.24302 * 6 5 4 37 37 H 1.08001 * 127.25132 * 359.97173 * 10 9 7 38 38 H 1.07999 * 126.39310 * 180.14088 * 11 10 9 39 39 H 1.09003 * 109.46792 * 270.00139 * 13 12 11 40 40 H 1.09001 * 109.47114 * 29.99282 * 13 12 11 41 41 H 1.08997 * 109.47284 * 149.99890 * 13 12 11 42 42 H 1.09001 * 109.46819 * 299.99381 * 17 15 2 43 43 H 1.08998 * 109.47295 * 59.99512 * 17 15 2 44 44 H 0.97003 * 120.00618 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4426 5 7 3.1846 2.9793 -1.4426 6 6 2.4517 4.2478 -1.4427 7 6 4.5324 2.9798 -1.4425 8 8 5.1405 1.9320 -1.3415 9 6 5.2705 4.2528 -1.5711 10 6 6.6714 4.4272 -1.4750 11 6 6.8848 5.7509 -1.6609 12 7 5.6783 6.3283 -1.8468 13 6 5.4605 7.7585 -2.0777 14 7 4.7490 5.4430 -1.7917 15 6 2.1389 -1.1673 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3853 -2.4723 0.0005 18 16 2.5615 -3.8481 0.0020 19 6 1.4413 -5.2082 0.0026 20 1 0.3760 -5.0304 0.0016 21 6 1.9281 -6.5080 0.0032 22 7 3.2264 -6.7247 0.0029 23 14 0.7405 -7.9500 0.0030 24 1 -0.6549 -7.4421 0.0015 25 1 0.9668 -8.7775 -1.2091 26 1 0.9656 -8.7767 1.2159 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.1500 1.1384 0.5138 31 1 1.6085 2.0283 0.5138 32 1 1.5001 1.8407 -1.9564 33 1 3.0416 0.9507 -1.9564 34 1 2.3439 4.6050 -2.4669 35 1 1.4650 4.0974 -1.0046 36 1 3.0009 4.9848 -0.8569 37 1 7.4142 3.6644 -1.2937 38 1 7.8412 6.2526 -1.6566 39 1 5.3224 8.2639 -1.1218 40 1 6.3256 8.1798 -2.5898 41 1 4.5714 7.8959 -2.6931 42 1 0.7584 -2.5298 0.8904 43 1 0.7589 -2.5302 -0.8896 44 1 3.5666 -7.6332 0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001582936621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = 5.438697 kcal Electronic energy + Delta-G solvation = -26484.417912 eV Core-core repulsion = 22565.070926 eV Total energy + Delta-G solvation = -3919.346986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.62137 -41.10502 -40.41845 -37.30992 -36.26178 -34.58635 -34.40586 -32.38724 -31.61753 -30.00405 -28.40826 -27.74403 -27.69760 -27.08523 -24.94822 -23.00796 -22.33730 -20.70520 -20.35126 -19.54908 -18.45115 -18.07158 -17.81014 -17.40061 -17.21903 -16.96286 -16.87881 -16.53579 -16.07600 -15.70218 -15.09372 -14.78999 -14.70881 -14.47980 -14.40983 -14.13355 -14.01697 -13.94630 -13.57569 -13.55192 -13.32244 -13.28912 -13.23533 -13.16025 -13.05264 -12.90925 -12.59617 -12.07826 -11.76753 -11.69020 -11.28831 -11.15910 -10.90071 -10.25217 -10.21471 -10.21154 -10.00819 -9.47289 -8.68599 -8.34075 -6.13543 0.48714 1.17112 1.24104 1.41936 1.42878 1.52754 1.58535 1.60835 1.88931 2.26387 2.28256 2.32643 2.99758 3.26556 3.27601 3.67578 3.82254 3.99002 3.99739 4.04842 4.21429 4.27829 4.33543 4.39562 4.45098 4.47768 4.48070 4.66533 4.70055 4.73688 4.74884 4.76681 4.80007 4.90301 4.97645 5.00015 5.27463 5.41669 5.41777 5.61816 5.89481 6.19958 6.22105 6.28795 6.81846 7.06349 7.09425 7.16653 8.75685 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.001987 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.865644 B =14089.237111 C =14935.116036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.111 3.889 4 C 0.110 3.890 5 N -0.602 5.602 6 C 0.086 3.914 7 C 0.584 3.416 8 O -0.575 6.575 9 C -0.048 4.048 10 C -0.214 4.214 11 C 0.005 3.995 12 N -0.280 5.280 13 C 0.075 3.925 14 N -0.256 5.256 15 C 0.523 3.477 16 O -0.563 6.563 17 C -0.118 4.118 18 S -0.163 6.163 19 C -0.542 4.542 20 H 0.086 0.914 21 C 0.010 3.990 22 N -0.913 5.913 23 Si 1.003 2.997 24 H -0.254 1.254 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.150 0.850 38 H 0.227 0.773 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 36.967 -3.966 37.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C -0.013 4.013 4 C -0.014 4.014 5 N -0.334 5.334 6 C -0.055 4.055 7 C 0.372 3.628 8 O -0.453 6.453 9 C -0.206 4.206 10 C -0.243 4.243 11 C -0.138 4.138 12 N -0.069 5.069 13 C -0.063 4.063 14 N -0.095 5.095 15 C 0.310 3.690 16 O -0.440 6.440 17 C -0.269 4.269 18 S 0.064 5.936 19 C -0.690 4.690 20 H 0.104 0.896 21 C -0.195 4.195 22 N -0.550 5.550 23 Si 0.825 3.175 24 H -0.177 1.177 25 H -0.200 1.200 26 H -0.199 1.199 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.060 0.940 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.167 0.833 38 H 0.244 0.756 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.121 0.879 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.888 37.030 -4.104 37.459 hybrid contribution -0.495 -1.790 0.125 1.861 sum -4.383 35.240 -3.979 35.734 Atomic orbital electron populations 1.22194 0.76002 1.05169 1.03753 1.47788 1.08805 1.04101 1.73753 1.21759 0.97314 0.85087 0.97147 1.21784 0.97380 0.84795 0.97445 1.47716 1.04771 1.08618 1.72290 1.22143 0.97274 0.82897 1.03207 1.17592 0.82412 0.86738 0.76057 1.90888 1.69091 1.33738 1.51537 1.21689 0.94264 0.91740 1.12866 1.21994 0.94752 0.97861 1.09670 1.23390 0.92779 0.92662 1.04937 1.46093 1.03590 1.09719 1.47467 1.22667 1.06896 0.71369 1.05360 1.73636 1.19066 0.97460 1.19359 1.20348 0.87350 0.85839 0.75433 1.90756 1.16071 1.87435 1.49761 1.23352 1.02471 0.94526 1.06591 1.85776 1.13090 0.97723 1.97036 1.23230 0.94602 0.92442 1.58744 0.89629 1.26208 0.97673 1.01855 0.93732 1.70216 1.14292 1.22392 1.48110 0.84846 0.78152 0.76511 0.78036 1.17700 1.19979 1.19908 0.90647 0.90641 0.87458 0.93963 0.86166 0.86314 0.94070 0.91697 0.88284 0.89984 0.83260 0.75634 0.87882 0.85540 0.87854 0.87054 0.87173 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 10.29 127.77 1.31 2.51 16 2 N -0.61 -17.74 2.87 -846.73 -2.43 -20.18 16 3 C 0.11 3.02 5.77 86.38 0.50 3.52 16 4 C 0.11 2.92 5.67 86.38 0.49 3.41 16 5 N -0.60 -15.17 2.87 -850.35 -2.44 -17.61 16 6 C 0.09 1.27 9.32 127.77 1.19 2.46 16 7 C 0.58 19.32 7.66 86.75 0.66 19.98 16 8 O -0.58 -25.61 16.57 -3.94 -0.07 -25.67 16 9 C -0.05 -1.27 6.76 42.46 0.29 -0.98 16 10 C -0.21 -4.89 10.81 22.41 0.24 -4.65 16 11 C 0.01 0.07 11.46 83.54 0.96 1.03 16 12 N -0.28 -3.31 3.70 -369.45 -1.37 -4.68 16 13 C 0.08 0.02 11.31 127.77 1.44 1.46 16 14 N -0.26 -4.86 8.74 -48.18 -0.42 -5.28 16 15 C 0.52 22.02 7.69 87.66 0.67 22.69 16 16 O -0.56 -30.40 15.44 -3.04 -0.05 -30.45 16 17 C -0.12 -5.06 4.71 71.24 0.34 -4.73 16 18 S -0.16 -9.69 20.57 -56.49 -1.16 -10.86 16 19 C -0.54 -32.10 9.50 67.95 0.65 -31.46 16 20 H 0.09 4.66 7.80 -2.91 -0.02 4.63 16 21 C 0.01 0.57 5.49 84.86 0.47 1.03 16 22 N -0.91 -58.37 13.22 21.65 0.29 -58.08 16 23 Si 1.00 44.86 29.55 68.60 2.03 46.89 16 24 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.36 6.44 -2.39 -0.02 1.34 16 29 H 0.11 1.05 7.89 -2.39 -0.02 1.03 16 30 H 0.04 1.58 7.42 -2.39 -0.02 1.56 16 31 H 0.12 2.11 7.89 -2.39 -0.02 2.09 16 32 H 0.12 2.15 8.07 -2.39 -0.02 2.13 16 33 H 0.04 1.53 7.50 -2.39 -0.02 1.51 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.83 8.04 -2.39 -0.02 0.81 16 36 H 0.08 1.28 5.91 -2.39 -0.01 1.26 16 37 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.23 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.13 -0.69 8.13 -2.39 -0.02 -0.71 16 41 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.11 4.23 7.40 -2.40 -0.02 4.22 16 43 H 0.11 4.22 8.11 -2.40 -0.02 4.20 16 44 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -101.35 388.91 4.59 -96.76 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.00 Total: 12.87 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 9.21 Total: 16.29 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -6.38 Total: -105.83 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -0.11 Total: -56.12 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -9.69 SS G_CDS: -1.16 Total: -10.86 kcal Total: -101.35 4.59 -96.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582936621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.200 kcal (2) G-P(sol) polarization free energy of solvation -101.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds