Wall clock time and date at job start Sat Apr 11 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30836 * 125.89046 * 2 1 4 4 N 1.40074 * 108.23838 * 180.29144 * 3 2 1 5 5 C 1.46499 * 126.04040 * 179.71875 * 4 3 2 6 6 C 1.34986 * 107.93000 * 359.72161 * 4 3 2 7 7 Cl 1.73600 * 126.14673 * 180.02562 * 6 4 3 8 8 C 1.35471 * 107.71254 * 0.02562 * 6 4 3 9 9 C 1.50698 * 126.04976 * 180.02562 * 8 6 4 10 10 C 1.50708 * 109.47240 * 90.02260 * 9 8 6 11 11 O 1.21280 * 119.99355 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00223 * 179.97438 * 10 9 8 13 13 C 1.47027 * 125.64859 * 0.03911 * 12 10 9 14 14 C 1.54318 * 107.27142 * 181.02411 * 13 12 10 15 15 C 1.55154 * 102.94427 * 22.19621 * 14 13 12 16 16 H 1.08998 * 111.00998 * 82.56851 * 15 14 13 17 17 N 1.46501 * 111.03677 * 206.41066 * 15 14 13 18 18 C 1.46498 * 120.00212 * 55.39521 * 17 15 14 19 19 C 1.36936 * 119.99648 * 235.38891 * 17 15 14 20 20 H 1.07996 * 120.00444 * 325.90941 * 19 17 15 21 21 C 1.38813 * 119.99553 * 145.91145 * 19 17 15 22 22 N 1.31617 * 119.99958 * 156.97324 * 21 19 17 23 23 Si 1.86803 * 120.00208 * 336.97002 * 21 19 17 24 24 H 1.48497 * 109.46978 * 95.37773 * 23 21 19 25 25 H 1.48502 * 109.47124 * 215.38167 * 23 21 19 26 26 H 1.48499 * 109.46842 * 335.38175 * 23 21 19 27 27 C 1.47422 * 125.65157 * 180.02562 * 12 10 9 28 28 H 1.09000 * 109.46620 * 270.16982 * 1 2 3 29 29 H 1.08995 * 109.46923 * 30.16842 * 1 2 3 30 30 H 1.08996 * 109.46831 * 150.17174 * 1 2 3 31 31 H 1.08999 * 109.47152 * 270.00296 * 5 4 3 32 32 H 1.09003 * 109.46837 * 30.00435 * 5 4 3 33 33 H 1.09004 * 109.47570 * 150.00135 * 5 4 3 34 34 H 1.09002 * 109.46976 * 330.02170 * 9 8 6 35 35 H 1.09000 * 109.47337 * 210.02042 * 9 8 6 36 36 H 1.09002 * 109.88037 * 300.44781 * 13 12 10 37 37 H 1.09000 * 109.88086 * 61.45104 * 13 12 10 38 38 H 1.09003 * 110.71897 * 263.83046 * 14 13 12 39 39 H 1.09004 * 110.72105 * 140.55986 * 14 13 12 40 40 H 1.08996 * 109.47353 * 91.67908 * 18 17 15 41 41 H 1.09001 * 109.46877 * 211.68564 * 18 17 15 42 42 H 1.09009 * 109.47029 * 331.68256 * 18 17 15 43 43 H 0.97001 * 120.00275 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.36721 * 37.06304 * 27 12 10 45 45 H 1.09007 * 110.45836 * 274.79266 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6088 0.6352 -0.0068 5 6 4.7894 1.5027 -0.0149 6 6 3.6154 -0.7146 -0.0046 7 17 5.0222 -1.7318 -0.0101 8 6 2.3269 -1.1331 0.0027 9 6 1.8598 -2.5658 0.0080 10 6 1.7107 -3.0403 1.4307 11 8 1.9597 -2.2891 2.3496 12 7 1.3006 -4.2994 1.6816 13 6 0.9672 -5.3102 0.6673 14 6 0.5262 -6.5843 1.4180 15 6 0.0941 -6.0388 2.8047 16 1 -0.9256 -5.6550 2.7732 17 7 0.2341 -7.0652 3.8405 18 6 1.5244 -7.7281 4.0452 19 6 -0.8411 -7.4049 4.6176 20 1 -1.5672 -6.6543 4.8927 21 6 -0.9976 -8.7141 5.0516 22 7 -1.7190 -8.9706 6.1222 23 14 -0.1845 -10.1118 4.1163 24 1 1.1175 -10.4402 4.7504 25 1 -1.0657 -11.3068 4.1474 26 1 0.0410 -9.6995 2.7077 27 6 1.1122 -4.8913 3.0186 28 1 -0.3632 0.0030 1.0277 29 1 -0.3633 0.8884 -0.5164 30 1 -0.3633 -0.8915 -0.5112 31 1 5.0763 1.7161 -1.0445 32 1 4.5580 2.4358 0.4988 33 1 5.6121 1.0015 0.4952 34 1 2.5910 -3.1882 -0.5078 35 1 0.8986 -2.6365 -0.5011 36 1 0.1532 -4.9498 0.0384 37 1 1.8429 -5.5228 0.0541 38 1 1.3593 -7.2799 1.5197 39 1 -0.3142 -7.0590 0.9114 40 1 2.0958 -7.1862 4.7988 41 1 1.3578 -8.7514 4.3818 42 1 2.0797 -7.7400 3.1072 43 1 -1.8287 -9.8855 6.4253 44 1 0.7088 -4.1499 3.7083 45 1 2.0551 -5.2866 3.3966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971869310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:34 Heat of formation + Delta-G solvation = 51.243155 kcal Electronic energy + Delta-G solvation = -27555.162595 eV Core-core repulsion = 23635.758133 eV Total energy + Delta-G solvation = -3919.404462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.50068 -40.91683 -38.92311 -37.98493 -36.59592 -35.31743 -33.83043 -32.99915 -31.55014 -30.68761 -29.81916 -28.53332 -28.03874 -26.13020 -24.97728 -23.77363 -22.05595 -21.16707 -20.90860 -19.97850 -18.99657 -18.13763 -17.94197 -17.78596 -16.85868 -16.81858 -16.24517 -16.00351 -15.60739 -15.14224 -14.83396 -14.73897 -14.53884 -14.40524 -14.35098 -14.19459 -14.01420 -13.72214 -13.54564 -13.47306 -13.34071 -13.20992 -13.02708 -12.74511 -12.69481 -12.53180 -12.41749 -12.39912 -12.24605 -12.02283 -11.61651 -11.52871 -11.36256 -10.91472 -10.63999 -10.18856 -9.59345 -9.48550 -8.83803 -8.19157 -5.56245 0.34091 0.54775 1.34513 1.41804 1.45322 1.57419 1.62832 1.72247 2.14769 2.44227 3.04565 3.32290 3.33851 3.67641 3.88835 3.91426 3.96295 4.08083 4.21747 4.25227 4.29483 4.32708 4.38757 4.44337 4.54650 4.55512 4.60305 4.74195 4.77383 4.78002 4.82901 4.90415 4.94657 4.99856 5.01545 5.06120 5.28428 5.31927 5.41158 5.52425 5.68054 5.90420 6.16264 6.47365 6.65217 6.93772 7.25501 7.60792 8.00288 9.00512 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.002537 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.857467 B =11035.585229 C =11507.982576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.087 3.913 3 N -0.304 5.304 4 N -0.372 5.372 5 C 0.088 3.912 6 C 0.127 3.873 7 Cl 0.008 6.992 8 C -0.209 4.209 9 C -0.049 4.049 10 C 0.525 3.475 11 O -0.585 6.585 12 N -0.615 5.615 13 C 0.105 3.895 14 C -0.148 4.148 15 C 0.165 3.835 16 H 0.074 0.926 17 N -0.609 5.609 18 C 0.105 3.895 19 C -0.263 4.263 20 H 0.041 0.959 21 C -0.027 4.027 22 N -0.951 5.951 23 Si 0.957 3.043 24 H -0.279 1.279 25 H -0.313 1.313 26 H -0.245 1.245 27 C 0.100 3.900 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.017 0.983 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.263 0.737 44 H 0.044 0.956 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.998 15.691 -22.358 30.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 N -0.128 5.128 4 N -0.156 5.156 5 C -0.052 4.052 6 C -0.027 4.027 7 Cl 0.036 6.964 8 C -0.222 4.222 9 C -0.090 4.090 10 C 0.316 3.684 11 O -0.465 6.465 12 N -0.349 5.349 13 C -0.016 4.016 14 C -0.187 4.187 15 C 0.057 3.943 16 H 0.092 0.908 17 N -0.332 5.332 18 C -0.038 4.038 19 C -0.393 4.393 20 H 0.059 0.941 21 C -0.223 4.223 22 N -0.595 5.595 23 Si 0.785 3.215 24 H -0.207 1.207 25 H -0.242 1.242 26 H -0.168 1.168 27 C -0.025 4.025 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.424 17.343 -21.798 30.921 hybrid contribution 0.392 -1.650 0.808 1.879 sum 13.816 15.692 -20.989 29.626 Atomic orbital electron populations 1.20354 0.84348 1.05170 1.03477 1.22572 0.98355 0.89378 0.97505 1.77404 0.85925 1.22489 1.26980 1.48738 1.06741 1.03059 1.57066 1.22268 0.82649 0.94912 1.05353 1.21606 0.90672 0.84451 1.05993 1.98404 1.37370 1.63774 1.96877 1.19205 0.89886 0.96459 1.16632 1.19983 1.06000 0.90849 0.92129 1.20902 0.75689 0.79468 0.92380 1.90689 1.52188 1.55122 1.48534 1.48543 1.66185 1.11893 1.08283 1.22267 1.02271 0.86650 0.90458 1.23142 1.02422 0.97287 0.95878 1.21622 0.96912 0.87752 0.88002 0.90813 1.43991 1.06514 1.44356 1.38297 1.21421 0.87141 0.95536 0.99742 1.18667 1.03466 0.92740 1.24406 0.94119 1.26081 0.98757 1.00140 0.97349 1.70021 1.45557 1.20525 1.23380 0.85692 0.76344 0.78018 0.81412 1.20659 1.24179 1.16837 1.22480 0.99430 0.95672 0.84939 0.90949 0.89400 0.87882 0.88237 0.87994 0.88304 0.86113 0.84550 0.88293 0.88562 0.90614 0.89105 0.96468 0.95445 0.90860 0.92779 0.93729 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.26 71.24 0.73 -0.55 16 2 C 0.09 2.05 7.22 43.10 0.31 2.36 16 3 N -0.30 -7.73 12.57 -47.39 -0.60 -8.32 16 4 N -0.37 -8.18 4.01 -359.25 -1.44 -9.62 16 5 C 0.09 1.12 11.31 127.77 1.44 2.56 16 6 C 0.13 2.87 7.45 83.57 0.62 3.49 16 7 Cl 0.01 0.14 28.34 -2.72 -0.08 0.07 16 8 C -0.21 -4.79 4.60 -20.11 -0.09 -4.88 16 9 C -0.05 -0.91 5.02 29.10 0.15 -0.76 16 10 C 0.53 14.59 7.84 87.66 0.69 15.28 16 11 O -0.59 -22.19 16.29 -3.03 -0.05 -22.24 16 12 N -0.62 -16.40 3.33 -811.83 -2.70 -19.10 16 13 C 0.11 1.95 6.49 86.73 0.56 2.51 16 14 C -0.15 -3.79 6.50 31.78 0.21 -3.58 16 15 C 0.17 5.91 3.54 46.38 0.16 6.07 16 16 H 0.07 2.81 7.96 -2.39 -0.02 2.80 16 17 N -0.61 -27.40 2.58 -695.06 -1.79 -29.19 16 18 C 0.11 4.26 8.39 127.77 1.07 5.33 16 19 C -0.26 -14.67 9.90 84.03 0.83 -13.84 16 20 H 0.04 2.54 8.06 -2.91 -0.02 2.51 16 21 C -0.03 -1.55 5.32 84.86 0.45 -1.10 16 22 N -0.95 -59.15 13.97 21.65 0.30 -58.85 16 23 Si 0.96 44.60 24.93 68.60 1.71 46.31 16 24 H -0.28 -12.51 6.67 99.48 0.66 -11.85 16 25 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 26 H -0.24 -10.31 7.11 99.48 0.71 -9.61 16 27 C 0.10 3.44 6.49 86.85 0.56 4.01 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.21 7.25 -2.39 -0.02 1.19 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.02 7.80 -2.38 -0.02 1.00 16 34 H 0.12 1.69 7.91 -2.39 -0.02 1.67 16 35 H 0.14 1.62 7.25 -2.39 -0.02 1.61 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.95 6.13 -2.39 -0.01 1.94 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.02 0.69 8.13 -2.39 -0.02 0.67 16 41 H 0.03 1.20 2.78 -2.39 -0.01 1.20 16 42 H 0.07 2.39 6.13 -2.38 -0.01 2.38 16 43 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.04 1.77 8.04 -2.39 -0.02 1.75 16 45 H 0.06 2.04 7.18 -2.38 -0.02 2.02 16 Total: -1.00 -79.10 377.14 4.02 -75.08 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.96 Total: 8.97 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 7.70 Total: 16.90 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -6.23 Total: -125.09 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.71 Total: 46.31 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.07 kcal Total: -79.10 4.02 -75.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971869310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.324 kcal (2) G-P(sol) polarization free energy of solvation -79.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds