Wall clock time and date at job start Sat Apr 11 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 119.99907 * 2 1 4 4 H 1.48507 * 109.46851 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47300 * 299.99861 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00274 * 3 2 1 7 7 C 1.38816 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00099 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47365 * 34.99247 * 10 9 7 12 12 C 1.53004 * 109.47074 * 274.99760 * 10 9 7 13 13 C 1.53000 * 109.47177 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47312 * 59.99779 * 13 12 10 15 15 C 1.53004 * 109.47180 * 300.00219 * 14 13 12 16 16 H 1.09007 * 109.46894 * 179.97438 * 15 14 13 17 17 N 1.46495 * 109.47005 * 299.99570 * 15 14 13 18 18 C 1.34772 * 120.00547 * 275.00176 * 17 15 14 19 19 O 1.21480 * 119.99810 * 0.02562 * 18 17 15 20 20 C 1.48459 * 120.00301 * 179.97438 * 18 17 15 21 21 C 1.39537 * 120.54772 * 179.97438 * 20 18 17 22 22 C 1.38762 * 118.26048 * 180.02562 * 21 20 18 23 23 C 1.50695 * 120.42670 * 180.02562 * 22 21 20 24 24 F 1.39906 * 109.47329 * 299.97889 * 23 22 21 25 25 F 1.39898 * 109.47264 * 59.97563 * 23 22 21 26 26 N 1.32202 * 119.14803 * 359.97438 * 22 21 20 27 27 C 1.31888 * 121.03804 * 0.02562 * 26 22 21 28 28 N 1.31582 * 121.91280 * 0.28108 * 27 26 22 29 29 C 1.52994 * 109.47167 * 60.00017 * 15 14 13 30 30 H 0.96998 * 120.00101 * 0.02562 * 1 2 3 31 31 H 0.97006 * 120.00269 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46606 * 299.99952 * 12 10 9 33 33 H 1.08999 * 109.47301 * 59.99419 * 12 10 9 34 34 H 1.09000 * 109.47076 * 179.97438 * 13 12 10 35 35 H 1.08995 * 109.46802 * 299.99879 * 13 12 10 36 36 H 1.09005 * 109.47542 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.47207 * 59.99674 * 14 13 12 38 38 H 0.97006 * 119.99636 * 94.99828 * 17 15 14 39 39 H 1.07996 * 120.86928 * 0.02562 * 21 20 18 40 40 H 1.08998 * 109.47447 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.04010 * 179.97438 * 27 26 22 42 42 H 1.09004 * 109.47294 * 59.99859 * 29 15 14 43 43 H 1.09000 * 109.47066 * 180.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9684 -3.5508 0.5885 12 6 2.4230 -4.0350 -1.4385 13 6 3.1874 -5.3604 -1.4386 14 6 2.3093 -6.4556 -0.8303 15 6 1.9443 -6.0774 0.6066 16 1 1.3183 -6.8576 1.0398 17 7 3.1677 -5.9356 1.3999 18 6 3.7334 -7.0200 1.9660 19 8 3.2290 -8.1152 1.8181 20 6 4.9735 -6.8764 2.7695 21 6 5.5684 -7.9913 3.3611 22 6 6.7261 -7.8025 4.1024 23 6 7.4093 -8.9726 4.7619 24 9 6.5301 -9.5763 5.6673 25 9 7.7861 -9.9027 3.7872 26 7 7.2226 -6.5831 4.2217 27 6 6.6349 -5.5505 3.6491 28 7 5.5328 -5.6813 2.9423 29 6 1.1799 -4.7522 0.6067 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 1.5126 -4.1410 -2.0286 33 1 3.0482 -3.2545 -1.8721 34 1 3.4470 -5.6300 -2.4623 35 1 4.0976 -5.2548 -0.8484 36 1 2.8540 -7.3998 -0.8299 37 1 1.3989 -6.5612 -1.4205 38 1 3.5707 -5.0612 1.5177 39 1 5.1390 -8.9754 3.2451 40 1 8.2950 -8.6240 5.2930 41 1 7.0681 -4.5684 3.7680 42 1 0.2696 -4.8577 0.0164 43 1 0.9203 -4.4825 1.6304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981167110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:47 Heat of formation + Delta-G solvation = -81.824504 kcal Electronic energy + Delta-G solvation = -29307.155397 eV Core-core repulsion = 24830.184009 eV Total energy + Delta-G solvation = -4476.971389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.60996 -47.59556 -41.77837 -40.05687 -38.05864 -34.96013 -34.52471 -33.09884 -32.91437 -31.19082 -29.77752 -28.20916 -27.91554 -25.67926 -24.14140 -23.74368 -22.21808 -21.56596 -21.01256 -19.19912 -18.87582 -18.69329 -17.86122 -17.52576 -17.19474 -16.27886 -16.12313 -15.93216 -15.79554 -15.30018 -15.25491 -14.73932 -14.46219 -14.40372 -14.14280 -13.94498 -13.76177 -13.50473 -13.44125 -13.09177 -12.53754 -12.14527 -12.09281 -11.95849 -11.81537 -11.60080 -11.43373 -11.03549 -10.92405 -10.82942 -10.67911 -10.43000 -10.35943 -10.22961 -10.18247 -9.89515 -9.78901 -9.57295 -9.09084 -8.90311 -7.00081 -5.80425 -3.09364 -0.09501 0.15088 2.37412 2.51755 2.72510 3.25499 3.40269 3.42278 3.46004 3.48257 3.53115 3.73246 4.02272 4.35126 4.36499 4.40701 4.53973 4.79248 4.94771 5.00082 5.01515 5.11104 5.43952 5.51990 5.57059 5.63509 5.69472 5.79839 5.91148 5.99961 6.03146 6.11642 6.16052 6.24057 6.44001 6.48786 6.53406 6.66596 6.90237 7.04139 7.21808 7.42942 7.66913 7.93442 8.37901 9.49350 10.06329 10.40806 11.42214 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.002619 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.759054 B =10687.241799 C =11892.248307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.180 3.820 11 H 0.043 0.957 12 C -0.137 4.137 13 C -0.117 4.117 14 C -0.128 4.128 15 C 0.148 3.852 16 H 0.088 0.912 17 N -0.687 5.687 18 C 0.566 3.434 19 O -0.526 6.526 20 C 0.144 3.856 21 C -0.135 4.135 22 C 0.097 3.903 23 C 0.328 3.672 24 F -0.186 7.186 25 F -0.187 7.187 26 N -0.482 5.482 27 C 0.304 3.696 28 N -0.475 5.475 29 C -0.134 4.134 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.416 0.584 39 H 0.167 0.833 40 H 0.141 0.859 41 H 0.215 0.785 42 H 0.080 0.920 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.711 -17.971 7.311 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.061 0.939 12 C -0.177 4.177 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.044 3.956 16 H 0.106 0.894 17 N -0.339 5.339 18 C 0.349 3.651 19 O -0.402 6.402 20 C -0.006 4.006 21 C -0.157 4.157 22 C -0.052 4.052 23 C 0.274 3.726 24 F -0.168 7.168 25 F -0.168 7.168 26 N -0.197 5.197 27 C 0.016 3.984 28 N -0.190 5.190 29 C -0.173 4.173 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.185 0.815 40 H 0.158 0.842 41 H 0.232 0.768 42 H 0.098 0.902 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.782 -17.702 7.292 23.589 hybrid contribution -0.020 0.614 -0.130 0.628 sum 13.762 -17.088 7.162 23.080 Atomic orbital electron populations 1.69668 1.05106 1.25554 1.57736 1.24741 0.95499 0.97690 1.03028 0.86147 0.78807 0.84232 0.77180 1.20539 1.21922 1.21897 1.19265 0.90985 0.84055 1.42564 0.91135 1.42417 1.05776 0.99679 1.88561 1.20158 0.93960 0.85972 0.92965 0.93891 1.22290 0.99806 0.95130 1.00486 1.21519 0.98476 0.95657 0.99841 1.21912 1.00846 0.98654 0.95198 1.21127 0.84627 0.98928 0.90921 0.89363 1.46111 1.27330 1.10586 1.49911 1.17674 0.82668 0.85179 0.79599 1.90805 1.62539 1.25733 1.61098 1.21852 0.95284 0.88962 0.94451 1.22749 0.95192 1.02497 0.95296 1.22052 0.93377 0.94025 0.95785 1.20095 0.91366 0.80893 0.80288 1.93073 1.71878 1.84633 1.67178 1.93069 1.91597 1.67643 1.64466 1.67982 1.32891 0.98994 1.19787 1.25156 0.87417 0.97997 0.87822 1.68442 1.10706 1.25239 1.14657 1.22147 0.99329 0.93319 1.02481 0.93561 0.78248 0.92479 0.91984 0.92710 0.92645 0.92018 0.90739 0.74577 0.81520 0.84216 0.76845 0.90183 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.14 5.12 -53.42 -0.27 -17.41 16 10 C 0.18 3.25 2.60 -67.93 -0.18 3.08 16 11 H 0.04 0.79 6.45 -51.93 -0.33 0.46 16 12 C -0.14 -2.29 5.50 -26.73 -0.15 -2.43 16 13 C -0.12 -1.59 5.77 -26.73 -0.15 -1.74 16 14 C -0.13 -1.62 5.60 -26.73 -0.15 -1.77 16 15 C 0.15 1.96 2.78 -67.93 -0.19 1.78 16 16 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 17 N -0.69 -8.99 4.23 -54.56 -0.23 -9.22 16 18 C 0.57 7.57 7.79 -12.05 -0.09 7.48 16 19 O -0.53 -8.07 16.09 5.38 0.09 -7.99 16 20 C 0.14 1.69 6.79 -82.63 -0.56 1.13 16 21 C -0.13 -1.40 9.32 -38.90 -0.36 -1.76 16 22 C 0.10 0.88 6.31 -82.24 -0.52 0.36 16 23 C 0.33 2.31 5.58 36.00 0.20 2.51 16 24 F -0.19 -1.57 17.27 2.25 0.04 -1.53 16 25 F -0.19 -1.56 17.27 2.25 0.04 -1.52 16 26 N -0.48 -4.33 10.35 -10.81 -0.11 -4.44 16 27 C 0.30 2.69 12.28 -92.26 -1.13 1.56 16 28 N -0.47 -5.23 9.70 -11.14 -0.11 -5.34 16 29 C -0.13 -2.03 5.07 -26.73 -0.14 -2.16 16 30 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.38 9.75 7.80 -40.82 -0.32 9.43 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.76 7.60 -51.93 -0.39 0.36 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.42 5.51 6.25 -40.82 -0.26 5.26 16 39 H 0.17 1.64 7.74 -52.49 -0.41 1.23 16 40 H 0.14 0.56 8.12 -51.93 -0.42 0.14 16 41 H 0.22 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -31.29 367.50 -8.44 -39.73 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.45 Total: 11.05 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -3.67 Total: 1.07 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: 0.00 Total: -63.21 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.29 -8.44 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981167110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.094 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds