Wall clock time and date at job start Sat Apr 11 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48501 * 109.46898 * 270.00162 * 3 2 1 5 5 H 1.48495 * 109.46874 * 30.00130 * 3 2 1 6 6 H 1.48493 * 109.47215 * 150.00373 * 3 2 1 7 7 C 1.38813 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00269 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00178 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00364 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46946 * 324.99998 * 10 9 7 12 12 C 1.52995 * 109.47009 * 84.99937 * 10 9 7 13 13 C 1.52996 * 109.47332 * 60.00282 * 12 10 9 14 14 C 1.53005 * 109.47156 * 59.99816 * 13 12 10 15 15 C 1.53001 * 109.46674 * 300.00254 * 14 13 12 16 16 H 1.09006 * 109.47247 * 299.99680 * 15 14 13 17 17 N 1.46503 * 109.46710 * 180.02562 * 15 14 13 18 18 C 1.34780 * 120.00215 * 85.00237 * 17 15 14 19 19 O 1.21474 * 119.99916 * 359.97438 * 18 17 15 20 20 C 1.48453 * 120.00160 * 179.97438 * 18 17 15 21 21 C 1.39529 * 120.55153 * 179.97438 * 20 18 17 22 22 C 1.38765 * 118.26574 * 179.97438 * 21 20 18 23 23 C 1.50706 * 120.42595 * 180.02562 * 22 21 20 24 24 F 1.39900 * 109.46729 * 210.00076 * 23 22 21 25 25 F 1.39899 * 109.46767 * 329.99787 * 23 22 21 26 26 N 1.32203 * 119.14580 * 359.97438 * 22 21 20 27 27 C 1.31885 * 121.03551 * 0.02562 * 26 22 21 28 28 N 1.31577 * 121.91893 * 359.97438 * 27 26 22 29 29 C 1.52992 * 109.47216 * 60.00107 * 15 14 13 30 30 H 0.97000 * 120.00460 * 359.97438 * 1 2 3 31 31 H 0.97008 * 119.99690 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47154 * 179.97438 * 12 10 9 33 33 H 1.08999 * 109.47675 * 300.00104 * 12 10 9 34 34 H 1.09002 * 109.47454 * 179.97438 * 13 12 10 35 35 H 1.09006 * 109.47097 * 299.99933 * 13 12 10 36 36 H 1.08999 * 109.47168 * 180.02562 * 14 13 12 37 37 H 1.08998 * 109.47180 * 60.00387 * 14 13 12 38 38 H 0.96996 * 120.00013 * 264.99884 * 17 15 14 39 39 H 1.08003 * 120.87048 * 0.25113 * 21 20 18 40 40 H 1.08991 * 109.46923 * 89.99960 * 23 22 21 41 41 H 1.08000 * 119.03947 * 179.97438 * 27 26 22 42 42 H 1.09001 * 109.47686 * 59.99966 * 29 15 14 43 43 H 1.09002 * 109.47134 * 179.97438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9687 -3.5506 -0.5900 12 6 2.4218 -4.0356 1.4364 13 6 1.1436 -4.1848 2.2638 14 6 0.2663 -5.2802 1.6542 15 6 -0.0975 -4.9013 0.2172 16 1 -0.6425 -3.9573 0.2172 17 7 -0.9379 -5.9498 -0.3664 18 6 -2.2702 -5.9369 -0.1627 19 8 -2.7740 -5.0561 0.5051 20 6 -3.1219 -6.9991 -0.7545 21 6 -4.5022 -6.9972 -0.5506 22 6 -5.2529 -8.0124 -1.1262 23 6 -6.7475 -8.0572 -0.9378 24 9 -7.1819 -9.3867 -0.9702 25 9 -7.0791 -7.4882 0.2965 26 7 -4.6403 -8.9392 -1.8428 27 6 -3.3332 -8.9113 -2.0158 28 7 -2.5817 -7.9683 -1.4891 29 6 1.1808 -4.7522 -0.6101 30 1 -0.4851 0.8400 0.0004 31 1 0.3554 -2.3881 0.0002 32 1 2.9664 -4.9798 1.4365 33 1 3.0468 -3.2554 1.8708 34 1 1.4028 -4.4551 3.2875 35 1 0.5985 -3.2408 2.2638 36 1 -0.6445 -5.3862 2.2434 37 1 0.8113 -6.2242 1.6542 38 1 -0.5356 -6.6533 -0.8993 39 1 -4.9746 -6.2232 0.0361 40 1 -7.2314 -7.4972 -1.7378 41 1 -2.8660 -9.6850 -2.6070 42 1 1.7258 -5.6961 -0.6102 43 1 0.9216 -4.4827 -1.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981167111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:49 Heat of formation + Delta-G solvation = -79.764174 kcal Electronic energy + Delta-G solvation = -29186.415788 eV Core-core repulsion = 24709.533742 eV Total energy + Delta-G solvation = -4476.882046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.51725 -47.52024 -41.73436 -39.82305 -38.05367 -34.95565 -34.45343 -33.07015 -32.91921 -30.95984 -29.42480 -28.23088 -28.00168 -25.47752 -24.16102 -23.64919 -22.06082 -21.88828 -20.71451 -19.26003 -18.64588 -18.25553 -18.08049 -17.32836 -17.29390 -16.37051 -16.01836 -15.84270 -15.69694 -15.45607 -14.75010 -14.60096 -14.50448 -14.30236 -13.91931 -13.82796 -13.68194 -13.58861 -13.39864 -13.10446 -12.43498 -12.16101 -12.07481 -11.78702 -11.58121 -11.43565 -11.28703 -10.95491 -10.85106 -10.75651 -10.59751 -10.31365 -10.22675 -10.16587 -10.10412 -9.93440 -9.60867 -9.52091 -8.98878 -8.81174 -6.94367 -5.74234 -3.03431 -0.04615 0.17573 2.44892 2.60307 2.80000 3.30958 3.40834 3.44186 3.49481 3.51117 3.51307 3.68529 4.08923 4.31910 4.39607 4.47221 4.60330 4.87240 5.01267 5.08932 5.17604 5.45104 5.57818 5.59462 5.67355 5.69954 5.80778 5.87627 6.04637 6.07618 6.15149 6.16917 6.30058 6.40638 6.57612 6.59557 6.77166 6.82802 6.99689 7.09297 7.25590 7.48651 7.71922 8.05276 8.43697 9.54851 10.11992 10.46149 11.47980 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.002388 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.661336 B =11722.540791 C =12478.077429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.179 3.821 11 H 0.052 0.948 12 C -0.136 4.136 13 C -0.109 4.109 14 C -0.121 4.121 15 C 0.142 3.858 16 H 0.103 0.897 17 N -0.696 5.696 18 C 0.563 3.437 19 O -0.510 6.510 20 C 0.147 3.853 21 C -0.140 4.140 22 C 0.098 3.902 23 C 0.330 3.670 24 F -0.182 7.182 25 F -0.186 7.186 26 N -0.481 5.481 27 C 0.301 3.699 28 N -0.483 5.483 29 C -0.127 4.127 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.407 0.593 39 H 0.172 0.828 40 H 0.140 0.860 41 H 0.212 0.788 42 H 0.063 0.937 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 -20.738 -3.360 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.070 0.930 12 C -0.176 4.176 13 C -0.147 4.147 14 C -0.159 4.159 15 C 0.039 3.961 16 H 0.120 0.880 17 N -0.346 5.346 18 C 0.344 3.656 19 O -0.383 6.383 20 C -0.002 4.002 21 C -0.163 4.163 22 C -0.051 4.051 23 C 0.275 3.725 24 F -0.163 7.163 25 F -0.167 7.167 26 N -0.195 5.195 27 C 0.013 3.987 28 N -0.199 5.199 29 C -0.166 4.166 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.242 0.758 39 H 0.189 0.811 40 H 0.157 0.843 41 H 0.228 0.772 42 H 0.082 0.918 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.568 -20.628 -3.377 22.591 hybrid contribution -0.060 1.048 0.284 1.087 sum -8.629 -19.580 -3.093 21.619 Atomic orbital electron populations 1.69659 1.05037 1.25637 1.57521 1.24732 0.95465 0.97610 1.03069 0.86230 0.78651 0.84105 0.77426 1.21844 1.21855 1.20836 1.19222 0.90958 0.84122 1.42744 0.91203 1.42510 1.05752 0.99625 1.88536 1.20158 0.93989 0.85884 0.93100 0.92964 1.22184 0.96893 0.99549 0.98996 1.21360 0.96710 0.99193 0.97476 1.21857 0.99775 0.98971 0.95335 1.21232 0.91264 0.90927 0.92636 0.87955 1.46034 1.05963 1.30002 1.52629 1.17684 0.82760 0.83963 0.81145 1.90883 1.73393 1.35514 1.38555 1.21900 0.92183 0.93322 0.92777 1.22731 0.94656 0.99938 0.98969 1.22213 0.96907 0.91756 0.94217 1.20061 0.88127 0.78881 0.85381 1.93060 1.90308 1.36208 1.96701 1.93074 1.92963 1.84494 1.46157 1.68017 1.12882 1.24409 1.14239 1.25095 0.85102 0.94712 0.93835 1.68395 1.41326 1.02457 1.07735 1.22082 0.95212 0.99769 0.99572 0.93508 0.78081 0.93814 0.91909 0.93162 0.90249 0.92251 0.92571 0.75756 0.81053 0.84280 0.77176 0.91829 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.90 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.27 4.28 -53.43 -0.23 -17.50 16 10 C 0.18 3.34 3.10 -67.94 -0.21 3.13 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.30 5.61 -26.74 -0.15 -2.45 16 13 C -0.11 -1.84 5.77 -26.73 -0.15 -1.99 16 14 C -0.12 -1.83 5.50 -26.73 -0.15 -1.97 16 15 C 0.14 2.25 2.28 -67.93 -0.15 2.09 16 16 H 0.10 2.04 5.94 -51.93 -0.31 1.74 16 17 N -0.70 -9.30 5.07 -54.56 -0.28 -9.58 16 18 C 0.56 8.18 7.79 -12.05 -0.09 8.09 16 19 O -0.51 -9.22 16.09 5.39 0.09 -9.13 16 20 C 0.15 1.74 6.79 -82.64 -0.56 1.18 16 21 C -0.14 -1.47 9.06 -38.91 -0.35 -1.82 16 22 C 0.10 0.91 6.61 -82.23 -0.54 0.36 16 23 C 0.33 2.41 5.74 36.01 0.21 2.61 16 24 F -0.18 -1.66 17.09 2.25 0.04 -1.62 16 25 F -0.19 -1.62 16.56 2.25 0.04 -1.59 16 26 N -0.48 -4.50 10.08 -10.81 -0.11 -4.61 16 27 C 0.30 2.48 12.27 -92.26 -1.13 1.34 16 28 N -0.48 -4.86 9.70 -11.14 -0.11 -4.97 16 29 C -0.13 -1.94 5.08 -26.74 -0.14 -2.08 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 9.93 6.06 -40.82 -0.25 9.68 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.62 7.60 -51.93 -0.39 1.23 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.41 4.48 7.99 -40.82 -0.33 4.15 16 39 H 0.17 1.74 7.38 -52.48 -0.39 1.35 16 40 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -32.61 366.22 -8.45 -41.06 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.43 Total: 11.00 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -3.67 Total: 1.43 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 0.00 Total: -63.91 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.20 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.61 -8.45 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981167111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.702 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds