Wall clock time and date at job start Sat Apr 11 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48501 * 109.46898 * 270.00162 * 3 2 1 5 5 H 1.48495 * 109.46874 * 30.00130 * 3 2 1 6 6 H 1.48493 * 109.47215 * 150.00373 * 3 2 1 7 7 C 1.38813 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00269 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00178 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00364 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46946 * 324.99998 * 10 9 7 12 12 C 1.52995 * 109.47009 * 84.99937 * 10 9 7 13 13 C 1.52996 * 109.47332 * 60.00282 * 12 10 9 14 14 C 1.53005 * 109.47156 * 59.99816 * 13 12 10 15 15 C 1.53001 * 109.46674 * 300.00254 * 14 13 12 16 16 H 1.09006 * 109.47247 * 299.99680 * 15 14 13 17 17 N 1.46503 * 109.46710 * 180.02562 * 15 14 13 18 18 C 1.34780 * 120.00215 * 85.00237 * 17 15 14 19 19 O 1.21474 * 119.99916 * 359.97438 * 18 17 15 20 20 C 1.48453 * 120.00160 * 179.97438 * 18 17 15 21 21 C 1.39529 * 120.55153 * 179.97438 * 20 18 17 22 22 C 1.38765 * 118.26574 * 179.97438 * 21 20 18 23 23 C 1.50706 * 120.42595 * 180.02562 * 22 21 20 24 24 F 1.39900 * 109.46729 * 210.00076 * 23 22 21 25 25 F 1.39899 * 109.46767 * 329.99787 * 23 22 21 26 26 N 1.32203 * 119.14580 * 359.97438 * 22 21 20 27 27 C 1.31885 * 121.03551 * 0.02562 * 26 22 21 28 28 N 1.31577 * 121.91893 * 359.97438 * 27 26 22 29 29 C 1.52992 * 109.47216 * 60.00107 * 15 14 13 30 30 H 0.97000 * 120.00460 * 359.97438 * 1 2 3 31 31 H 0.97008 * 119.99690 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47154 * 179.97438 * 12 10 9 33 33 H 1.08999 * 109.47675 * 300.00104 * 12 10 9 34 34 H 1.09002 * 109.47454 * 179.97438 * 13 12 10 35 35 H 1.09006 * 109.47097 * 299.99933 * 13 12 10 36 36 H 1.08999 * 109.47168 * 180.02562 * 14 13 12 37 37 H 1.08998 * 109.47180 * 60.00387 * 14 13 12 38 38 H 0.96996 * 120.00013 * 264.99884 * 17 15 14 39 39 H 1.08003 * 120.87048 * 0.25113 * 21 20 18 40 40 H 1.08991 * 109.46923 * 89.99960 * 23 22 21 41 41 H 1.08000 * 119.03947 * 179.97438 * 27 26 22 42 42 H 1.09001 * 109.47686 * 59.99966 * 29 15 14 43 43 H 1.09002 * 109.47134 * 179.97438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9687 -3.5506 -0.5900 12 6 2.4218 -4.0356 1.4364 13 6 1.1436 -4.1848 2.2638 14 6 0.2663 -5.2802 1.6542 15 6 -0.0975 -4.9013 0.2172 16 1 -0.6425 -3.9573 0.2172 17 7 -0.9379 -5.9498 -0.3664 18 6 -2.2702 -5.9369 -0.1627 19 8 -2.7740 -5.0561 0.5051 20 6 -3.1219 -6.9991 -0.7545 21 6 -4.5022 -6.9972 -0.5506 22 6 -5.2529 -8.0124 -1.1262 23 6 -6.7475 -8.0572 -0.9378 24 9 -7.1819 -9.3867 -0.9702 25 9 -7.0791 -7.4882 0.2965 26 7 -4.6403 -8.9392 -1.8428 27 6 -3.3332 -8.9113 -2.0158 28 7 -2.5817 -7.9683 -1.4891 29 6 1.1808 -4.7522 -0.6101 30 1 -0.4851 0.8400 0.0004 31 1 0.3554 -2.3881 0.0002 32 1 2.9664 -4.9798 1.4365 33 1 3.0468 -3.2554 1.8708 34 1 1.4028 -4.4551 3.2875 35 1 0.5985 -3.2408 2.2638 36 1 -0.6445 -5.3862 2.2434 37 1 0.8113 -6.2242 1.6542 38 1 -0.5356 -6.6533 -0.8993 39 1 -4.9746 -6.2232 0.0361 40 1 -7.2314 -7.4972 -1.7378 41 1 -2.8660 -9.6850 -2.6070 42 1 1.7258 -5.6961 -0.6102 43 1 0.9216 -4.4827 -1.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981167111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:49 Heat of formation + Delta-G solvation = -101.389389 kcal Electronic energy + Delta-G solvation = -29187.353528 eV Core-core repulsion = 24709.533742 eV Total energy + Delta-G solvation = -4477.819786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.14967 -48.16446 -42.54086 -41.00862 -39.41674 -36.17839 -35.57473 -34.65204 -33.74141 -32.69381 -30.76015 -29.72076 -28.83876 -26.37760 -25.65551 -24.88318 -23.32363 -23.18455 -21.86598 -20.44048 -19.49377 -19.38407 -19.15679 -18.67192 -18.06961 -17.45552 -16.93509 -16.77803 -16.67105 -16.50747 -16.34883 -15.79914 -15.56209 -15.35185 -15.27296 -15.14417 -14.95678 -14.70914 -14.48025 -14.07018 -13.80816 -13.44274 -13.42495 -12.88376 -12.82932 -12.77904 -12.59124 -12.34238 -12.22238 -12.15043 -12.05229 -11.81575 -11.79665 -11.58605 -11.30843 -11.11946 -11.08012 -10.82754 -10.65539 -10.14982 -8.94343 -7.89549 -5.16928 -0.89847 -0.54881 1.46437 1.47217 1.48534 1.56751 1.67975 2.02992 2.46647 2.58714 2.66435 2.84871 3.02321 3.34034 3.43936 3.58668 3.71854 3.77573 3.81965 3.89876 4.05019 4.13110 4.17279 4.31924 4.35637 4.44351 4.55693 4.68088 4.75016 4.80967 4.90841 5.00435 5.10141 5.16030 5.28110 5.36170 5.40277 5.44202 5.53774 5.61819 5.68219 6.29870 6.32512 6.61060 6.97365 7.38226 8.17454 8.37853 9.33946 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.002388 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.661336 B =11722.540791 C =12478.077429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.968 3.032 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.734 5.734 10 C 0.168 3.832 11 H 0.056 0.944 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.111 4.111 15 C 0.150 3.850 16 H 0.052 0.948 17 N -0.683 5.683 18 C 0.560 3.440 19 O -0.556 6.556 20 C 0.135 3.865 21 C -0.149 4.149 22 C 0.104 3.896 23 C 0.329 3.671 24 F -0.191 7.191 25 F -0.196 7.196 26 N -0.486 5.486 27 C 0.305 3.695 28 N -0.484 5.484 29 C -0.115 4.115 30 H 0.247 0.753 31 H 0.371 0.629 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.422 0.578 39 H 0.167 0.833 40 H 0.183 0.817 41 H 0.252 0.748 42 H 0.109 0.891 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 -23.644 -4.313 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.798 3.202 4 H -0.216 1.216 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.375 5.375 10 C 0.059 3.941 11 H 0.074 0.926 12 C -0.167 4.167 13 C -0.144 4.144 14 C -0.149 4.149 15 C 0.045 3.955 16 H 0.070 0.930 17 N -0.333 5.333 18 C 0.344 3.656 19 O -0.433 6.433 20 C -0.013 4.013 21 C -0.171 4.171 22 C -0.046 4.046 23 C 0.275 3.725 24 F -0.172 7.172 25 F -0.177 7.177 26 N -0.200 5.200 27 C 0.018 3.982 28 N -0.201 5.201 29 C -0.154 4.154 30 H 0.056 0.944 31 H 0.204 0.796 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.260 0.740 39 H 0.185 0.815 40 H 0.200 0.800 41 H 0.268 0.732 42 H 0.127 0.873 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.229 -23.605 -4.349 25.068 hybrid contribution -0.434 1.813 0.556 1.945 sum -7.663 -21.793 -3.793 23.410 Atomic orbital electron populations 1.69839 1.06654 1.25657 1.60205 1.25513 0.96215 1.00980 1.04541 0.85208 0.77722 0.80015 0.77259 1.21622 1.22860 1.19350 1.19647 0.91450 0.85295 1.39820 0.90398 1.42740 1.05373 1.00954 1.88435 1.20488 0.94201 0.84762 0.94610 0.92649 1.22064 0.96688 1.00862 0.97080 1.21288 0.96553 0.97586 0.98969 1.21765 0.99247 0.99668 0.94227 1.20928 0.91226 0.89616 0.93696 0.93008 1.45813 1.05573 1.29601 1.52338 1.18089 0.83101 0.83999 0.80440 1.90861 1.74218 1.37532 1.40659 1.21457 0.92170 0.93547 0.94150 1.22724 0.94367 1.00579 0.99472 1.22496 0.97849 0.90955 0.93316 1.20498 0.87228 0.78763 0.86015 1.93039 1.90266 1.37171 1.96748 1.93055 1.92925 1.84594 1.47132 1.68135 1.13466 1.24219 1.14207 1.25939 0.84782 0.94528 0.92919 1.68397 1.41567 1.02415 1.07675 1.21960 0.94538 1.00454 0.98404 0.94412 0.79647 0.89599 0.94013 0.91271 0.95081 0.93594 0.89031 0.73968 0.81535 0.80037 0.73213 0.87287 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.11 13.06 21.65 0.28 -60.82 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 3 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.23 -12.60 9.93 84.03 0.83 -11.77 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.73 -36.04 4.28 -322.96 -1.38 -37.42 16 10 C 0.17 6.08 3.10 44.99 0.14 6.22 16 11 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 12 C -0.13 -4.07 5.61 30.59 0.17 -3.90 16 13 C -0.11 -3.52 5.77 30.59 0.18 -3.34 16 14 C -0.11 -3.22 5.50 30.60 0.17 -3.05 16 15 C 0.15 4.70 2.28 44.99 0.10 4.80 16 16 H 0.05 2.21 5.94 -2.38 -0.01 2.19 16 17 N -0.68 -17.72 5.07 -444.83 -2.26 -19.98 16 18 C 0.56 16.59 7.79 86.97 0.68 17.27 16 19 O -0.56 -21.34 16.09 -3.64 -0.06 -21.40 16 20 C 0.14 3.12 6.79 41.99 0.29 3.40 16 21 C -0.15 -3.08 9.06 22.71 0.21 -2.88 16 22 C 0.10 1.76 6.61 42.63 0.28 2.05 16 23 C 0.33 4.24 5.74 71.24 0.41 4.65 16 24 F -0.19 -3.16 17.09 44.97 0.77 -2.39 16 25 F -0.20 -3.28 16.56 44.97 0.74 -2.54 16 26 N -0.49 -7.94 10.08 -188.11 -1.90 -9.84 16 27 C 0.31 4.16 12.27 180.92 2.22 6.38 16 28 N -0.48 -8.77 9.70 -189.16 -1.84 -10.60 16 29 C -0.12 -3.29 5.08 30.59 0.16 -3.13 16 30 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.37 20.22 6.06 -92.70 -0.56 19.66 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.03 1.32 7.60 -2.38 -0.02 1.31 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.42 8.33 7.99 -92.71 -0.74 7.58 16 39 H 0.17 3.55 7.38 -2.91 -0.02 3.53 16 40 H 0.18 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.25 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -75.21 366.22 2.46 -72.74 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -0.23 Total: 30.92 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.30 Total: 12.48 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -7.09 Total: -138.66 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.06 Total: -21.40 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 1.51 Total: -4.92 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -75.21 2.46 -72.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981167111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.645 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds