Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30839 * 125.89151 * 2 1 4 4 N 1.40081 * 108.23806 * 180.25142 * 3 2 1 5 5 C 1.46492 * 126.03686 * 179.68264 * 4 3 2 6 6 C 1.34988 * 107.92410 * 359.71590 * 4 3 2 7 7 Cl 1.73598 * 126.13687 * 179.97438 * 6 4 3 8 8 C 1.35459 * 107.71727 * 0.02562 * 6 4 3 9 9 C 1.50706 * 126.04671 * 179.97438 * 8 6 4 10 10 C 1.50700 * 109.46986 * 90.02035 * 9 8 6 11 11 O 1.21281 * 120.00197 * 354.24884 * 10 9 8 12 12 N 1.34777 * 119.99713 * 174.24419 * 10 9 8 13 13 C 1.48219 * 119.96628 * 174.84533 * 12 10 9 14 14 C 1.47137 * 110.33890 * 102.51632 * 13 12 10 15 15 C 1.53801 * 111.84357 * 58.29892 * 14 13 12 16 16 N 1.43468 * 107.95696 * 281.66492 * 15 14 13 17 17 C 1.36932 * 118.93806 * 273.60813 * 16 15 14 18 18 H 1.08004 * 120.00514 * 28.94550 * 17 16 15 19 19 C 1.38812 * 119.99893 * 208.94609 * 17 16 15 20 20 N 1.31623 * 120.00252 * 198.99830 * 19 17 16 21 21 Si 1.86804 * 120.00116 * 18.99853 * 19 17 16 22 22 H 1.48495 * 109.46889 * 271.77188 * 21 19 17 23 23 H 1.48502 * 109.47108 * 151.77085 * 21 19 17 24 24 H 1.48497 * 109.46681 * 31.76763 * 21 19 17 25 25 C 1.48856 * 122.11829 * 93.88747 * 16 15 14 26 26 C 1.43617 * 119.97335 * 354.87176 * 12 10 9 27 27 H 1.09000 * 109.47815 * 270.22226 * 1 2 3 28 28 H 1.09007 * 109.47198 * 30.21698 * 1 2 3 29 29 H 1.09001 * 109.47157 * 150.21426 * 1 2 3 30 30 H 1.09005 * 109.47178 * 270.04601 * 5 4 3 31 31 H 1.08998 * 109.47312 * 30.04518 * 5 4 3 32 32 H 1.08999 * 109.47168 * 150.04052 * 5 4 3 33 33 H 1.08993 * 109.46887 * 330.02017 * 9 8 6 34 34 H 1.09001 * 109.46813 * 210.02119 * 9 8 6 35 35 H 1.08997 * 109.32310 * 342.25055 * 13 12 10 36 36 H 1.08999 * 109.32595 * 222.78198 * 13 12 10 37 37 H 1.09001 * 109.01090 * 297.68955 * 14 13 12 38 38 H 1.09000 * 108.94176 * 178.86134 * 14 13 12 39 39 H 1.09000 * 109.76555 * 162.04679 * 15 14 13 40 40 H 1.09000 * 109.80287 * 41.30164 * 15 14 13 41 41 H 0.97000 * 120.00484 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.47980 * 80.34798 * 25 16 15 43 43 H 1.09003 * 109.47822 * 200.38131 * 25 16 15 44 44 H 1.09008 * 108.87042 * 31.41937 * 26 12 10 45 45 H 1.08997 * 108.87554 * 149.85327 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2740 1.0600 0.0000 4 7 3.6088 0.6352 -0.0058 5 6 4.7893 1.5026 -0.0144 6 6 3.6152 -0.7147 -0.0030 7 17 5.0220 -1.7318 -0.0085 8 6 2.3268 -1.1330 0.0039 9 6 1.8597 -2.5658 0.0086 10 6 1.7103 -3.0408 1.4309 11 8 2.0571 -2.3272 2.3482 12 7 1.1910 -4.2586 1.6837 13 6 1.1495 -4.7718 3.0736 14 6 -0.2092 -4.6476 3.6242 15 6 -1.2425 -5.4069 2.7750 16 7 -1.5384 -4.6086 1.6202 17 6 -2.5127 -3.6505 1.7090 18 1 -2.7161 -3.1732 2.6562 19 6 -3.2390 -3.2927 0.5814 20 7 -3.8925 -2.1505 0.5547 21 14 -3.2888 -4.4321 -0.8980 22 1 -2.1460 -4.1276 -1.7960 23 1 -4.5633 -4.2327 -1.6337 24 1 -3.1967 -5.8418 -0.4403 25 6 -0.8246 -4.7925 0.3270 26 6 0.6790 -5.0580 0.6060 27 1 -0.3635 0.0040 1.0276 28 1 -0.3634 0.8881 -0.5172 29 1 -0.3633 -0.8919 -0.5105 30 1 5.0762 1.7157 -1.0442 31 1 4.5580 2.4360 0.4988 32 1 5.6119 1.0017 0.4959 33 1 2.5909 -3.1880 -0.5073 34 1 0.8987 -2.6363 -0.5009 35 1 1.8424 -4.1994 3.6902 36 1 1.4468 -5.8205 3.0799 37 1 -0.4836 -3.5932 3.6581 38 1 -0.2184 -5.0493 4.6375 39 1 -2.1512 -5.5663 3.3556 40 1 -0.8308 -6.3670 2.4638 41 1 -4.3998 -1.9003 -0.2334 42 1 -1.2536 -5.6399 -0.2077 43 1 -0.9285 -3.8910 -0.2770 44 1 1.2494 -4.8396 -0.2969 45 1 0.8079 -6.1111 0.8561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981549354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = 51.638453 kcal Electronic energy + Delta-G solvation = -29256.439104 eV Core-core repulsion = 25337.051784 eV Total energy + Delta-G solvation = -3919.387321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.53559 -41.03385 -38.64494 -37.98846 -35.91170 -35.40075 -34.39812 -33.35811 -32.68745 -30.73081 -29.44864 -28.76999 -27.37606 -25.94987 -25.09886 -23.66793 -22.03488 -21.57958 -20.99495 -19.82665 -18.82428 -18.09715 -17.80540 -17.43382 -16.87280 -16.77524 -16.46107 -15.88081 -15.65387 -15.38167 -15.10128 -14.74790 -14.48518 -14.36187 -14.29896 -14.04957 -13.95537 -13.67735 -13.56581 -13.46597 -13.37756 -13.21510 -12.87213 -12.75719 -12.72363 -12.54502 -12.50500 -12.19841 -11.86112 -11.72190 -11.61662 -11.52068 -11.43498 -10.78576 -10.60042 -10.19822 -9.50433 -9.46764 -8.72883 -8.04603 -5.39920 0.31417 0.52744 1.37140 1.38669 1.50430 1.58477 1.62310 1.76670 2.31355 2.50951 3.16244 3.28346 3.49312 3.77874 3.89347 3.92873 4.08975 4.17523 4.21024 4.24863 4.29641 4.31183 4.43547 4.52913 4.55282 4.57498 4.65821 4.70267 4.75253 4.77865 4.88333 4.92649 4.94549 4.97722 5.02551 5.09879 5.27514 5.43734 5.53653 5.69809 5.82302 5.99863 6.24601 6.43759 6.60175 7.09562 7.34824 7.78750 8.10267 9.15411 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.004573 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.483753 B = 6121.599392 C = 7153.400794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.086 3.914 3 N -0.300 5.300 4 N -0.367 5.367 5 C 0.087 3.913 6 C 0.136 3.864 7 Cl 0.018 6.982 8 C -0.207 4.207 9 C -0.060 4.060 10 C 0.520 3.480 11 O -0.581 6.581 12 N -0.591 5.591 13 C 0.130 3.870 14 C -0.155 4.155 15 C 0.160 3.840 16 N -0.610 5.610 17 C -0.249 4.249 18 H 0.030 0.970 19 C -0.029 4.029 20 N -0.957 5.957 21 Si 0.948 3.052 22 H -0.258 1.258 23 H -0.322 1.322 24 H -0.260 1.260 25 C 0.094 3.906 26 C 0.095 3.905 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.016 0.984 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.259 0.741 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.105 0.895 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.452 -4.477 -4.692 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 N -0.124 5.124 4 N -0.152 5.152 5 C -0.052 4.052 6 C -0.018 4.018 7 Cl 0.046 6.954 8 C -0.220 4.220 9 C -0.100 4.100 10 C 0.309 3.691 11 O -0.461 6.461 12 N -0.322 5.322 13 C 0.008 3.992 14 C -0.196 4.196 15 C 0.033 3.967 16 N -0.334 5.334 17 C -0.379 4.379 18 H 0.048 0.952 19 C -0.224 4.224 20 N -0.603 5.603 21 Si 0.776 3.224 22 H -0.184 1.184 23 H -0.252 1.252 24 H -0.185 1.185 25 C -0.031 4.031 26 C -0.030 4.030 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.035 0.965 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.123 0.877 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.898 -2.771 -4.276 21.510 hybrid contribution -0.857 -0.552 -0.280 1.057 sum 20.041 -3.323 -4.557 20.820 Atomic orbital electron populations 1.20053 0.85790 1.03823 1.02474 1.22253 0.97272 0.90235 0.98134 1.77395 0.86194 1.21847 1.27009 1.48765 1.06517 1.03106 1.56786 1.22320 0.82437 0.94903 1.05499 1.21390 0.90328 0.84387 1.05720 1.98381 1.36504 1.63617 1.96860 1.19129 0.90181 0.96064 1.16605 1.20021 1.04373 0.91560 0.94077 1.20845 0.76123 0.80621 0.91530 1.90617 1.52563 1.54913 1.48037 1.47486 1.58771 1.17149 1.08792 1.20636 0.96618 1.00213 0.81695 1.21651 0.97176 1.00192 1.00561 1.20508 0.95891 0.92979 0.87314 1.43997 1.40255 1.40012 1.09110 1.18668 1.10937 1.12635 0.95653 0.95232 1.25924 0.97458 0.97945 1.01028 1.70005 1.37084 1.22504 1.30713 0.85979 0.75905 0.80611 0.79860 1.18366 1.25160 1.18487 1.22828 0.92924 0.99476 0.87911 1.21957 0.93120 0.97010 0.90919 0.92423 0.89707 0.90460 0.88127 0.88000 0.87703 0.85347 0.87975 0.91675 0.87639 0.96454 0.89936 0.94318 0.90550 0.93247 0.93321 0.93301 0.87706 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.36 10.26 71.23 0.73 -1.63 16 2 C 0.09 3.13 7.22 43.10 0.31 3.44 16 3 N -0.30 -10.44 12.57 -47.40 -0.60 -11.04 16 4 N -0.37 -10.37 4.01 -359.28 -1.44 -11.82 16 5 C 0.09 1.47 11.31 127.77 1.44 2.92 16 6 C 0.14 3.93 7.45 83.57 0.62 4.56 16 7 Cl 0.02 0.40 28.34 -2.72 -0.08 0.32 16 8 C -0.21 -6.86 4.61 -20.11 -0.09 -6.96 16 9 C -0.06 -1.79 4.25 29.10 0.12 -1.67 16 10 C 0.52 18.46 7.65 87.66 0.67 19.13 16 11 O -0.58 -25.36 15.52 -3.03 -0.05 -25.41 16 12 N -0.59 -18.31 2.46 -830.50 -2.04 -20.35 16 13 C 0.13 3.75 5.67 84.22 0.48 4.22 16 14 C -0.16 -5.25 5.64 29.04 0.16 -5.09 16 15 C 0.16 5.67 5.63 87.21 0.49 6.17 16 16 N -0.61 -26.50 2.28 -697.38 -1.59 -28.09 16 17 C -0.25 -13.80 9.67 84.03 0.81 -12.99 16 18 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 19 C -0.03 -1.63 5.20 84.86 0.44 -1.19 16 20 N -0.96 -59.06 13.97 21.65 0.30 -58.76 16 21 Si 0.95 43.56 23.99 68.60 1.65 45.20 16 22 H -0.26 -10.58 6.57 99.48 0.65 -9.93 16 23 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 24 H -0.26 -11.22 6.66 99.48 0.66 -10.56 16 25 C 0.09 3.37 4.49 86.68 0.39 3.76 16 26 C 0.10 2.45 4.98 87.67 0.44 2.88 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 29 H 0.08 2.94 7.25 -2.39 -0.02 2.93 16 30 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.10 1.36 7.80 -2.39 -0.02 1.34 16 33 H 0.13 2.88 7.58 -2.39 -0.02 2.86 16 34 H 0.10 3.15 6.24 -2.39 -0.01 3.13 16 35 H 0.06 2.07 7.19 -2.39 -0.02 2.05 16 36 H 0.11 2.16 8.06 -2.39 -0.02 2.14 16 37 H 0.02 0.76 7.91 -2.39 -0.02 0.74 16 38 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.04 1.48 8.02 -2.39 -0.02 1.46 16 40 H 0.08 2.13 7.59 -2.39 -0.02 2.11 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.05 1.67 5.81 -2.39 -0.01 1.65 16 43 H 0.05 1.98 5.03 -2.39 -0.01 1.97 16 44 H 0.10 2.06 6.49 -2.38 -0.02 2.04 16 45 H 0.11 2.04 7.73 -2.39 -0.02 2.02 16 Total: -1.00 -78.70 367.28 4.09 -74.62 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.91 Total: 17.78 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 7.02 Total: 17.55 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -5.37 Total: -130.06 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.05 Total: -25.41 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.65 Total: 45.20 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.32 kcal Total: -78.70 4.09 -74.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981549354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.256 kcal (2) G-P(sol) polarization free energy of solvation -78.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds