Wall clock time and date at job start Sat Apr 11 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38076 * 126.27639 * 2 1 4 4 C 1.47381 * 126.42113 * 0.03047 * 3 2 1 5 5 O 1.21606 * 119.99861 * 269.70263 * 4 3 2 6 6 N 1.34777 * 120.00533 * 89.71288 * 4 3 2 7 7 C 1.46919 * 120.63409 * 179.97438 * 6 4 3 8 8 C 1.53200 * 108.77456 * 126.36295 * 7 6 4 9 9 C 1.53036 * 109.30845 * 54.63985 * 8 7 6 10 10 N 1.46504 * 109.45821 * 178.61020 * 9 8 7 11 11 C 1.46505 * 119.99707 * 60.06935 * 10 9 8 12 12 C 1.36931 * 120.00260 * 240.06554 * 10 9 8 13 13 H 1.07999 * 119.99979 * 20.40244 * 12 10 9 14 14 C 1.38821 * 120.00316 * 200.40103 * 12 10 9 15 15 N 1.31620 * 119.99480 * 14.98024 * 14 12 10 16 16 Si 1.86798 * 120.00184 * 194.97741 * 14 12 10 17 17 H 1.48494 * 109.46969 * 85.00180 * 16 14 12 18 18 H 1.48495 * 109.46987 * 205.00285 * 16 14 12 19 19 H 1.48496 * 109.46967 * 325.00410 * 16 14 12 20 20 C 1.53043 * 109.53701 * 298.62819 * 9 8 7 21 21 C 1.46927 * 120.62804 * 359.96834 * 6 4 3 22 22 C 1.41389 * 107.15229 * 179.76237 * 3 2 1 23 23 Cl 1.73598 * 126.00492 * 180.24625 * 22 3 2 24 24 N 1.30526 * 107.99294 * 0.24148 * 22 3 2 25 25 N 1.34234 * 126.28879 * 180.18202 * 2 1 3 26 26 C 1.46503 * 125.73526 * 359.97438 * 25 2 1 27 27 H 1.08999 * 109.47133 * 90.00226 * 1 2 3 28 28 H 1.09007 * 109.47028 * 209.99733 * 1 2 3 29 29 H 1.08991 * 109.47570 * 329.99647 * 1 2 3 30 30 H 1.08995 * 109.58861 * 246.15376 * 7 6 4 31 31 H 1.09002 * 109.58838 * 6.57924 * 7 6 4 32 32 H 1.09004 * 109.49299 * 174.58345 * 8 7 6 33 33 H 1.08997 * 109.49877 * 294.68245 * 8 7 6 34 34 H 1.08997 * 109.46680 * 58.65385 * 9 8 7 35 35 H 1.08998 * 109.47492 * 95.10916 * 11 10 9 36 36 H 1.09006 * 109.46559 * 215.11395 * 11 10 9 37 37 H 1.09000 * 109.47041 * 335.10681 * 11 10 9 38 38 H 0.96995 * 119.99440 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.49964 * 301.41932 * 20 9 8 40 40 H 1.09003 * 109.52117 * 181.33601 * 20 9 8 41 41 H 1.09002 * 109.58534 * 353.42470 * 21 6 4 42 42 H 1.09005 * 109.58619 * 113.70092 * 21 6 4 43 43 H 1.08995 * 109.46770 * 270.31437 * 26 25 2 44 44 H 1.09003 * 109.47118 * 30.31242 * 26 25 2 45 45 H 1.08994 * 109.46988 * 150.31399 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1131 0.0000 4 6 1.8856 2.5202 0.0006 5 8 1.7095 3.1027 -1.0522 6 7 1.6800 3.1616 1.1680 7 6 1.2436 4.5644 1.1848 8 6 -0.0193 4.6776 2.0446 9 6 0.2571 4.0888 3.4299 10 7 -0.9383 4.2254 4.2657 11 6 -2.1942 3.5913 3.8569 12 6 -0.8819 4.9456 5.4289 13 1 -0.0959 5.6714 5.5771 14 6 -1.8349 4.7430 6.4177 15 7 -2.6059 3.6770 6.3800 16 14 -2.0230 5.9833 7.8018 17 1 -2.9190 7.0829 7.3627 18 1 -2.6078 5.3131 8.9909 19 1 -0.6915 6.5397 8.1521 20 6 0.6176 2.6077 3.2938 21 6 1.8881 2.4712 2.4482 22 6 3.6598 0.6499 0.0056 23 17 5.0840 1.6424 0.0140 24 7 3.6340 -0.6551 0.0035 25 7 2.3014 -1.0820 -0.0034 26 6 1.8493 -2.4755 -0.0073 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 2.0313 5.1871 1.6087 31 1 1.0240 4.8910 0.1683 32 1 -0.2987 5.7265 2.1443 33 1 -0.8324 4.1274 1.5710 34 1 1.0866 4.6234 3.8928 35 1 -2.2855 2.6197 4.3424 36 1 -3.0324 4.2239 4.1492 37 1 -2.1990 3.4588 2.7750 38 1 -3.2720 3.5356 7.0707 39 1 -0.2014 2.0770 2.8085 40 1 0.7913 2.1828 4.2824 41 1 2.0939 1.4165 2.2653 42 1 2.7300 2.9219 2.9738 43 1 1.7322 -2.8223 1.0193 44 1 0.8931 -2.5458 -0.5259 45 1 2.5862 -3.0951 -0.5183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985772050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:35 Heat of formation + Delta-G solvation = 44.977542 kcal Electronic energy + Delta-G solvation = -28433.353122 eV Core-core repulsion = 24513.676962 eV Total energy + Delta-G solvation = -3919.676159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.71999 -40.85132 -38.85122 -37.96977 -36.65174 -34.54248 -33.99045 -33.28266 -31.94583 -31.42472 -28.76599 -27.98750 -27.74012 -26.35811 -24.40635 -24.00191 -22.85332 -21.68831 -20.94352 -19.77644 -18.72372 -18.52236 -17.64973 -16.99729 -16.88496 -16.74347 -16.08522 -15.95562 -15.69955 -15.18329 -15.06320 -14.79779 -14.66610 -14.29733 -14.21842 -14.06872 -13.90566 -13.69841 -13.57451 -13.26734 -13.13329 -13.08963 -12.76617 -12.69033 -12.61827 -12.59205 -12.33253 -12.15777 -12.03819 -11.87912 -11.77208 -11.60478 -11.22292 -11.01610 -10.57518 -10.34636 -9.73135 -9.67180 -8.74520 -7.77870 -5.22392 0.28362 0.44813 1.01262 1.45055 1.49044 1.51028 1.57978 1.60769 2.12103 2.54300 3.32967 3.35254 3.52536 3.62970 3.76367 3.91013 4.00610 4.14979 4.20364 4.36379 4.37952 4.40136 4.41080 4.56049 4.58092 4.67713 4.71315 4.74126 4.79099 4.82698 4.87812 4.93819 4.96942 5.05348 5.13433 5.29936 5.40790 5.53184 5.62702 5.70580 5.73456 5.77618 6.19089 6.35449 6.38301 7.10154 7.20669 7.94400 8.37188 9.25058 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.003097 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.157174 B = 9039.695772 C = 9611.602188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.149 3.851 3 C -0.295 4.295 4 C 0.604 3.396 5 O -0.573 6.573 6 N -0.593 5.593 7 C 0.121 3.879 8 C -0.130 4.130 9 C 0.174 3.826 10 N -0.610 5.610 11 C 0.184 3.816 12 C -0.258 4.258 13 H 0.071 0.929 14 C -0.052 4.052 15 N -0.937 5.937 16 Si 0.962 3.038 17 H -0.289 1.289 18 H -0.298 1.298 19 H -0.270 1.270 20 C -0.128 4.128 21 C 0.125 3.875 22 C 0.145 3.855 23 Cl 0.015 6.985 24 N -0.299 5.299 25 N -0.340 5.340 26 C 0.082 3.918 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.003 0.997 36 H 0.010 0.990 37 H 0.027 0.973 38 H 0.246 0.754 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.124 0.876 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.182 -12.035 -13.800 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.017 3.983 3 C -0.311 4.311 4 C 0.391 3.609 5 O -0.452 6.452 6 N -0.324 5.324 7 C -0.002 4.002 8 C -0.170 4.170 9 C 0.067 3.933 10 N -0.332 5.332 11 C 0.039 3.961 12 C -0.389 4.389 13 H 0.089 0.911 14 C -0.247 4.247 15 N -0.584 5.584 16 Si 0.791 3.209 17 H -0.216 1.216 18 H -0.224 1.224 19 H -0.195 1.195 20 C -0.169 4.169 21 C 0.002 3.998 22 C -0.047 4.047 23 Cl 0.042 6.958 24 N -0.124 5.124 25 N -0.121 5.121 26 C -0.056 4.056 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.022 0.978 36 H 0.028 0.972 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.142 0.858 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.765 -12.897 -14.213 21.533 hybrid contribution -0.559 1.398 1.109 1.870 sum 9.206 -11.498 -13.104 19.715 Atomic orbital electron populations 1.20757 0.83677 1.05853 1.05455 1.21747 0.95982 0.85022 0.95591 1.19675 0.91750 0.94163 1.25502 1.17329 0.75800 0.84799 0.82926 1.90732 1.53614 1.68627 1.32254 1.48122 1.65447 1.12964 1.05858 1.21627 0.96361 0.80922 1.01254 1.22263 0.97091 1.01604 0.96065 1.20490 0.88763 0.93875 0.90138 1.44186 1.06110 1.60482 1.22471 1.20410 0.87019 0.95538 0.93153 1.19572 1.11956 1.13694 0.93636 0.91083 1.25625 1.00469 0.98629 0.99956 1.70234 1.25342 1.27123 1.35727 0.85354 0.77985 0.78722 0.78826 1.21601 1.22442 1.19480 1.22268 0.96866 0.98692 0.99034 1.21681 0.97651 0.97725 0.82706 1.22553 0.88572 0.90791 1.02762 1.98400 1.35507 1.65020 1.96832 1.77088 0.98595 1.10183 1.26561 1.48462 1.01674 1.08035 1.53957 1.22555 1.02988 0.74078 1.05969 0.87636 0.86824 0.90368 0.89956 0.89535 0.91122 0.92690 0.92175 0.97833 0.97161 0.95467 0.94503 0.92564 0.92253 0.89781 0.90312 0.88196 0.85792 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.70 71.23 0.69 -0.75 16 2 C 0.15 3.07 6.88 42.15 0.29 3.36 16 3 C -0.30 -7.88 3.87 -20.13 -0.08 -7.95 16 4 C 0.60 18.33 7.05 86.65 0.61 18.94 16 5 O -0.57 -20.96 16.52 -4.05 -0.07 -21.03 16 6 N -0.59 -16.66 2.97 -822.77 -2.44 -19.10 16 7 C 0.12 3.38 6.43 86.37 0.56 3.93 16 8 C -0.13 -4.16 5.32 30.67 0.16 -4.00 16 9 C 0.17 6.44 2.55 45.02 0.11 6.56 16 10 N -0.61 -28.92 2.81 -702.60 -1.98 -30.90 16 11 C 0.18 8.73 8.03 127.77 1.03 9.76 16 12 C -0.26 -13.69 9.61 84.04 0.81 -12.88 16 13 H 0.07 3.66 7.81 -2.91 -0.02 3.63 16 14 C -0.05 -2.83 5.06 84.86 0.43 -2.40 16 15 N -0.94 -54.14 10.67 21.65 0.23 -53.91 16 16 Si 0.96 44.35 29.58 68.60 2.03 46.38 16 17 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C -0.13 -4.14 5.34 30.68 0.16 -3.98 16 21 C 0.13 3.32 6.34 86.37 0.55 3.87 16 22 C 0.14 3.85 7.89 85.66 0.68 4.53 16 23 Cl 0.01 0.37 29.19 -2.72 -0.08 0.29 16 24 N -0.30 -7.39 12.50 -48.96 -0.61 -8.00 16 25 N -0.34 -6.26 3.98 -354.31 -1.41 -7.67 16 26 C 0.08 0.61 11.05 127.77 1.41 2.02 16 27 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.11 0.93 7.71 -2.38 -0.02 0.91 16 29 H 0.08 1.46 7.96 -2.39 -0.02 1.44 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.09 2.51 7.00 -2.39 -0.02 2.49 16 32 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.05 1.83 6.72 -2.39 -0.02 1.81 16 34 H 0.06 2.26 7.85 -2.39 -0.02 2.24 16 35 H 0.00 0.18 7.40 -2.39 -0.02 0.16 16 36 H 0.01 0.51 7.22 -2.38 -0.02 0.50 16 37 H 0.03 1.11 6.47 -2.39 -0.02 1.09 16 38 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.06 1.84 7.72 -2.39 -0.02 1.82 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.08 2.11 6.24 -2.39 -0.01 2.09 16 42 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 44 H 0.12 0.22 7.64 -2.39 -0.02 0.20 16 45 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -71.62 377.72 4.08 -67.54 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.00 Total: 5.40 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 7.41 Total: 21.01 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -6.21 Total: -119.58 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.07 Total: -21.03 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.29 kcal Total: -71.62 4.08 -67.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985772050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.517 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds