Wall clock time and date at job start Sat Apr 11 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30836 * 125.89497 * 2 1 4 4 N 1.40078 * 108.23801 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.03325 * 179.97438 * 4 3 2 6 6 C 1.34980 * 107.92838 * 359.76872 * 4 3 2 7 7 Cl 1.73602 * 126.13885 * 180.22687 * 6 4 3 8 8 C 1.35460 * 107.71561 * 0.36883 * 6 4 3 9 9 C 1.50707 * 126.04683 * 179.89278 * 8 6 4 10 10 C 1.50695 * 109.47011 * 269.69063 * 9 8 6 11 11 O 1.21274 * 120.00413 * 0.27295 * 10 9 8 12 12 N 1.34784 * 119.99635 * 180.02562 * 10 9 8 13 13 C 1.47019 * 125.64691 * 359.69289 * 12 10 9 14 14 C 1.54337 * 107.26147 * 178.85174 * 13 12 10 15 15 H 1.09003 * 110.67176 * 96.52401 * 14 13 12 16 16 N 1.46503 * 110.84723 * 219.66830 * 14 13 12 17 17 C 1.36932 * 120.00322 * 268.69495 * 16 14 13 18 18 H 1.07997 * 119.99679 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00341 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00579 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99659 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47175 * 90.00497 * 21 19 17 23 23 H 1.48507 * 109.46944 * 209.99782 * 21 19 17 24 24 H 1.48489 * 109.47415 * 329.99948 * 21 19 17 25 25 C 1.55150 * 103.02027 * 338.13566 * 14 13 12 26 26 C 1.47426 * 125.64612 * 180.02562 * 12 10 9 27 27 H 1.08994 * 110.36888 * 85.14317 * 26 12 10 28 28 C 1.53001 * 110.36673 * 322.92781 * 26 12 10 29 29 H 1.08999 * 109.47184 * 269.95923 * 1 2 3 30 30 H 1.09002 * 109.46816 * 29.96464 * 1 2 3 31 31 H 1.09006 * 109.47130 * 149.95629 * 1 2 3 32 32 H 1.08995 * 109.46914 * 90.02230 * 5 4 3 33 33 H 1.08998 * 109.47064 * 210.02250 * 5 4 3 34 34 H 1.09007 * 109.47117 * 330.02565 * 5 4 3 35 35 H 1.09005 * 109.46877 * 149.68936 * 9 8 6 36 36 H 1.09002 * 109.46993 * 29.69283 * 9 8 6 37 37 H 1.09000 * 109.88145 * 298.39274 * 13 12 10 38 38 H 1.08997 * 109.88249 * 59.56115 * 13 12 10 39 39 H 0.97002 * 119.99738 * 88.69317 * 16 14 13 40 40 H 0.96997 * 120.00926 * 179.97438 * 20 19 17 41 41 H 1.08997 * 111.00858 * 277.23433 * 25 14 13 42 42 H 1.09004 * 111.03612 * 153.40202 * 25 14 13 43 43 H 1.08998 * 109.47192 * 61.45681 * 28 26 12 44 44 H 1.08997 * 109.47224 * 181.45380 * 28 26 12 45 45 H 1.09001 * 109.47414 * 301.45582 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6350 -0.0006 5 6 4.7894 1.5025 -0.0013 6 6 3.6152 -0.7148 0.0042 7 17 5.0221 -1.7319 0.0112 8 6 2.3269 -1.1331 -0.0005 9 6 1.8597 -2.5659 0.0000 10 6 1.7027 -3.0436 -1.4206 11 8 1.9510 -2.2961 -2.3427 12 7 1.2912 -4.3034 -1.6663 13 6 0.9688 -5.3135 -0.6479 14 6 0.5185 -6.5877 -1.3932 15 1 1.3489 -7.2859 -1.4982 16 7 -0.6072 -7.2241 -0.7045 17 6 -0.3754 -8.1856 0.2425 18 1 0.6372 -8.4751 0.4814 19 6 -1.4420 -8.7890 0.8946 20 7 -1.2192 -9.7135 1.8045 21 14 -3.1935 -8.2887 0.4807 22 1 -3.7054 -9.1435 -0.6204 23 1 -4.0532 -8.4585 1.6797 24 1 -3.2144 -6.8665 0.0541 25 6 0.0787 -6.0453 -2.7786 26 6 1.0965 -4.8987 -3.0009 27 1 2.0385 -5.2935 -3.3813 28 6 0.5258 -3.8604 -3.9690 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3634 -0.8896 -0.5145 32 1 5.0829 1.7175 1.0261 33 1 5.6088 1.0006 -0.5158 34 1 4.5548 2.4350 -0.5148 35 1 0.9013 -2.6354 0.5147 36 1 2.5936 -3.1872 0.5133 37 1 1.8515 -5.5267 -0.0449 38 1 0.1607 -4.9533 -0.0114 39 1 -1.5167 -6.9643 -0.9194 40 1 -1.9645 -10.1349 2.2604 41 1 -0.9409 -5.6616 -2.7424 42 1 0.1785 -6.8108 -3.5482 43 1 1.2291 -3.0339 -4.0714 44 1 0.3637 -4.3221 -4.9429 45 1 -0.4218 -3.4853 -3.5824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989118135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:52 Heat of formation + Delta-G solvation = 55.005193 kcal Electronic energy + Delta-G solvation = -27751.903798 eV Core-core repulsion = 23832.662471 eV Total energy + Delta-G solvation = -3919.241328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60525 -39.88649 -37.40874 -37.09559 -34.53172 -34.26491 -32.48209 -31.58637 -31.15008 -29.92049 -28.92953 -27.68754 -25.44850 -25.14836 -23.63445 -21.91583 -20.96459 -20.43497 -20.01219 -18.61749 -17.74006 -17.09346 -16.76572 -16.26121 -15.83445 -15.34398 -14.90482 -14.55169 -14.28607 -14.01127 -13.75991 -13.49110 -13.38105 -13.22113 -13.12890 -12.80591 -12.75893 -12.62363 -12.47757 -12.27355 -12.07302 -11.94174 -11.89343 -11.79962 -11.61934 -11.49451 -11.17377 -10.87222 -10.71004 -10.68540 -10.40668 -10.11176 -9.67871 -9.43754 -9.30586 -9.04731 -8.54289 -8.32923 -7.42849 -5.86849 -3.24969 1.25148 1.44685 2.37420 2.39643 2.87762 3.30135 3.31289 3.34461 3.40727 4.11866 4.50258 4.68242 4.71138 4.80893 4.84996 4.91117 5.03344 5.06478 5.08761 5.13849 5.25048 5.38828 5.48513 5.50678 5.54934 5.59424 5.68043 5.73724 5.74532 5.77606 5.79238 5.93508 6.01942 6.13177 6.32714 6.35453 6.40054 6.43535 6.48486 6.64208 6.78021 7.37334 7.81238 7.88447 8.31802 8.44381 9.08454 9.80679 9.98842 11.30782 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.002904 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.591757 B = 9638.692577 C = 9802.803277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.100 3.900 3 N -0.277 5.277 4 N -0.369 5.369 5 C 0.099 3.901 6 C 0.136 3.864 7 Cl -0.004 7.004 8 C -0.185 4.185 9 C -0.063 4.063 10 C 0.531 3.469 11 O -0.540 6.540 12 N -0.612 5.612 13 C 0.073 3.927 14 C 0.178 3.822 15 H 0.076 0.924 16 N -0.737 5.737 17 C -0.253 4.253 18 H 0.093 0.907 19 C 0.010 3.990 20 N -0.929 5.929 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.141 4.141 26 C 0.138 3.862 27 H 0.072 0.928 28 C -0.162 4.162 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 19.902 -5.228 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 N -0.100 5.100 4 N -0.153 5.153 5 C -0.042 4.042 6 C -0.017 4.017 7 Cl 0.024 6.976 8 C -0.198 4.198 9 C -0.104 4.104 10 C 0.320 3.680 11 O -0.418 6.418 12 N -0.347 5.347 13 C -0.053 4.053 14 C 0.066 3.934 15 H 0.094 0.906 16 N -0.378 5.378 17 C -0.383 4.383 18 H 0.110 0.890 19 C -0.187 4.187 20 N -0.576 5.576 21 Si 0.713 3.287 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.202 1.202 25 C -0.180 4.180 26 C 0.034 3.966 27 H 0.090 0.910 28 C -0.220 4.220 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.197 0.803 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.278 21.446 -5.516 24.413 hybrid contribution -0.949 -0.753 -0.012 1.212 sum 9.329 20.693 -5.527 23.362 Atomic orbital electron populations 1.20235 0.86018 1.03864 1.03227 1.22073 0.97062 0.89454 0.97998 1.77452 0.84989 1.21595 1.26009 1.48366 1.06284 1.02645 1.58018 1.21918 0.83658 0.94945 1.03679 1.21342 0.90109 0.83864 1.06386 1.98407 1.38086 1.64184 1.96940 1.18948 0.89588 0.95722 1.15526 1.19958 1.04001 0.91351 0.95095 1.20140 0.76600 0.80196 0.91091 1.90609 1.50801 1.54462 1.45894 1.48639 1.66224 1.11406 1.08423 1.23234 1.00469 0.90030 0.91596 1.21132 0.91926 0.91244 0.89102 0.90593 1.42731 1.02585 1.45740 1.46767 1.19079 0.95155 1.11694 1.12363 0.88959 1.24679 0.97441 0.98258 0.98295 1.69691 1.30727 1.28859 1.28317 0.86580 0.86203 0.78214 0.77671 1.20979 1.21656 1.20221 1.23209 0.98852 0.96945 0.98973 1.21821 0.98123 0.93227 0.83384 0.90982 1.22152 1.01912 0.99939 0.97973 0.90007 0.90528 0.90128 0.90372 0.89403 0.88727 0.87659 0.88144 0.91753 0.90932 0.80251 0.92887 0.90815 0.90007 0.89770 0.92525 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.12 36.00 0.36 -0.40 16 2 C 0.10 1.31 7.22 -82.41 -0.59 0.72 16 3 N -0.28 -3.76 12.57 33.67 0.42 -3.34 16 4 N -0.37 -4.44 4.01 -64.90 -0.26 -4.70 16 5 C 0.10 0.73 11.31 59.85 0.68 1.41 16 6 C 0.14 1.74 7.45 -17.16 -0.13 1.61 16 7 Cl 0.00 -0.05 28.34 -51.86 -1.47 -1.52 16 8 C -0.19 -2.47 4.60 -105.00 -0.48 -2.96 16 9 C -0.06 -0.80 4.88 -29.03 -0.14 -0.94 16 10 C 0.53 7.92 7.62 -10.98 -0.08 7.83 16 11 O -0.54 -9.35 13.70 5.56 0.08 -9.27 16 12 N -0.61 -8.93 3.24 -163.03 -0.53 -9.46 16 13 C 0.07 1.12 6.25 -3.06 -0.02 1.10 16 14 C 0.18 3.03 3.60 -66.09 -0.24 2.80 16 15 H 0.08 1.33 8.09 -51.93 -0.42 0.91 16 16 N -0.74 -15.79 4.96 -51.65 -0.26 -16.05 16 17 C -0.25 -6.60 10.44 -15.06 -0.16 -6.76 16 18 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 20 N -0.93 -27.88 13.97 55.49 0.78 -27.11 16 21 Si 0.88 20.92 27.73 -169.99 -4.71 16.21 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 25 C -0.14 -2.01 6.13 -24.58 -0.15 -2.16 16 26 C 0.14 1.90 3.76 -66.41 -0.25 1.65 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 C -0.16 -2.16 8.71 37.16 0.32 -1.84 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.54 7.81 -51.93 -0.41 0.13 16 34 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.11 1.19 7.93 -51.93 -0.41 0.78 16 36 H 0.10 1.19 7.90 -51.93 -0.41 0.78 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.17 8.03 -51.93 -0.42 0.76 16 39 H 0.36 7.75 5.62 -40.82 -0.23 7.52 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.28 5.89 -51.93 -0.31 0.97 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -32.70 383.61 -7.97 -40.67 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.82 Total: 6.55 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.98 Total: 2.23 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.15 Total: -60.65 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.71 Total: 16.21 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.47 Total: -1.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.70 -7.97 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989118135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.672 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds