Wall clock time and date at job start Sat Apr 11 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30836 * 125.89497 * 2 1 4 4 N 1.40078 * 108.23801 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.03325 * 179.97438 * 4 3 2 6 6 C 1.34980 * 107.92838 * 359.76872 * 4 3 2 7 7 Cl 1.73602 * 126.13885 * 180.22687 * 6 4 3 8 8 C 1.35460 * 107.71561 * 0.36883 * 6 4 3 9 9 C 1.50707 * 126.04683 * 179.89278 * 8 6 4 10 10 C 1.50695 * 109.47011 * 269.69063 * 9 8 6 11 11 O 1.21274 * 120.00413 * 0.27295 * 10 9 8 12 12 N 1.34784 * 119.99635 * 180.02562 * 10 9 8 13 13 C 1.47019 * 125.64691 * 359.69289 * 12 10 9 14 14 C 1.54337 * 107.26147 * 178.85174 * 13 12 10 15 15 H 1.09003 * 110.67176 * 96.52401 * 14 13 12 16 16 N 1.46503 * 110.84723 * 219.66830 * 14 13 12 17 17 C 1.36932 * 120.00322 * 268.69495 * 16 14 13 18 18 H 1.07997 * 119.99679 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00341 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00579 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99659 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47175 * 90.00497 * 21 19 17 23 23 H 1.48507 * 109.46944 * 209.99782 * 21 19 17 24 24 H 1.48489 * 109.47415 * 329.99948 * 21 19 17 25 25 C 1.55150 * 103.02027 * 338.13566 * 14 13 12 26 26 C 1.47426 * 125.64612 * 180.02562 * 12 10 9 27 27 H 1.08994 * 110.36888 * 85.14317 * 26 12 10 28 28 C 1.53001 * 110.36673 * 322.92781 * 26 12 10 29 29 H 1.08999 * 109.47184 * 269.95923 * 1 2 3 30 30 H 1.09002 * 109.46816 * 29.96464 * 1 2 3 31 31 H 1.09006 * 109.47130 * 149.95629 * 1 2 3 32 32 H 1.08995 * 109.46914 * 90.02230 * 5 4 3 33 33 H 1.08998 * 109.47064 * 210.02250 * 5 4 3 34 34 H 1.09007 * 109.47117 * 330.02565 * 5 4 3 35 35 H 1.09005 * 109.46877 * 149.68936 * 9 8 6 36 36 H 1.09002 * 109.46993 * 29.69283 * 9 8 6 37 37 H 1.09000 * 109.88145 * 298.39274 * 13 12 10 38 38 H 1.08997 * 109.88249 * 59.56115 * 13 12 10 39 39 H 0.97002 * 119.99738 * 88.69317 * 16 14 13 40 40 H 0.96997 * 120.00926 * 179.97438 * 20 19 17 41 41 H 1.08997 * 111.00858 * 277.23433 * 25 14 13 42 42 H 1.09004 * 111.03612 * 153.40202 * 25 14 13 43 43 H 1.08998 * 109.47192 * 61.45681 * 28 26 12 44 44 H 1.08997 * 109.47224 * 181.45380 * 28 26 12 45 45 H 1.09001 * 109.47414 * 301.45582 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6350 -0.0006 5 6 4.7894 1.5025 -0.0013 6 6 3.6152 -0.7148 0.0042 7 17 5.0221 -1.7319 0.0112 8 6 2.3269 -1.1331 -0.0005 9 6 1.8597 -2.5659 0.0000 10 6 1.7027 -3.0436 -1.4206 11 8 1.9510 -2.2961 -2.3427 12 7 1.2912 -4.3034 -1.6663 13 6 0.9688 -5.3135 -0.6479 14 6 0.5185 -6.5877 -1.3932 15 1 1.3489 -7.2859 -1.4982 16 7 -0.6072 -7.2241 -0.7045 17 6 -0.3754 -8.1856 0.2425 18 1 0.6372 -8.4751 0.4814 19 6 -1.4420 -8.7890 0.8946 20 7 -1.2192 -9.7135 1.8045 21 14 -3.1935 -8.2887 0.4807 22 1 -3.7054 -9.1435 -0.6204 23 1 -4.0532 -8.4585 1.6797 24 1 -3.2144 -6.8665 0.0541 25 6 0.0787 -6.0453 -2.7786 26 6 1.0965 -4.8987 -3.0009 27 1 2.0385 -5.2935 -3.3813 28 6 0.5258 -3.8604 -3.9690 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3634 -0.8896 -0.5145 32 1 5.0829 1.7175 1.0261 33 1 5.6088 1.0006 -0.5158 34 1 4.5548 2.4350 -0.5148 35 1 0.9013 -2.6354 0.5147 36 1 2.5936 -3.1872 0.5133 37 1 1.8515 -5.5267 -0.0449 38 1 0.1607 -4.9533 -0.0114 39 1 -1.5167 -6.9643 -0.9194 40 1 -1.9645 -10.1349 2.2604 41 1 -0.9409 -5.6616 -2.7424 42 1 0.1785 -6.8108 -3.5482 43 1 1.2291 -3.0339 -4.0714 44 1 0.3637 -4.3221 -4.9429 45 1 -0.4218 -3.4853 -3.5824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989118135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:51 Heat of formation + Delta-G solvation = 34.481899 kcal Electronic energy + Delta-G solvation = -27752.793755 eV Core-core repulsion = 23832.662471 eV Total energy + Delta-G solvation = -3920.131285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.52150 -41.07956 -38.69889 -37.99327 -36.02002 -35.32948 -33.57421 -33.40710 -32.20103 -30.68379 -30.45712 -28.64483 -26.60951 -26.03532 -25.37905 -23.11530 -21.97766 -21.83089 -20.95679 -19.82011 -19.58096 -18.02438 -17.86417 -17.44114 -16.81557 -16.49117 -16.35471 -15.92500 -15.47844 -15.25510 -14.91922 -14.56804 -14.49015 -14.39741 -14.17466 -14.12594 -13.63841 -13.60705 -13.53236 -13.38348 -13.23120 -13.09090 -12.99477 -12.85295 -12.78974 -12.68275 -12.53067 -12.33821 -12.11807 -11.91134 -11.77800 -11.63113 -11.49689 -11.00590 -10.56236 -10.19411 -9.55067 -9.48571 -9.31189 -7.97281 -5.32308 0.34113 0.52258 1.41150 1.44641 1.46784 1.54008 1.61932 1.71968 2.16035 2.53551 3.30527 3.32875 3.44600 3.72127 3.88615 3.89821 3.93477 4.02938 4.17332 4.20939 4.29197 4.30299 4.37102 4.49243 4.53314 4.54744 4.61899 4.74196 4.77198 4.81547 4.86424 4.88655 4.94153 4.96611 5.16392 5.19184 5.30676 5.34714 5.48162 5.61503 5.67216 5.83132 6.26285 6.45348 6.63495 7.11668 7.28056 7.86150 8.04781 9.23638 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.002904 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.591757 B = 9638.692577 C = 9802.803277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.088 3.912 3 N -0.299 5.299 4 N -0.370 5.370 5 C 0.088 3.912 6 C 0.128 3.872 7 Cl 0.007 6.993 8 C -0.205 4.205 9 C -0.059 4.059 10 C 0.532 3.468 11 O -0.564 6.564 12 N -0.611 5.611 13 C 0.084 3.916 14 C 0.169 3.831 15 H 0.070 0.930 16 N -0.738 5.738 17 C -0.229 4.229 18 H 0.063 0.937 19 C -0.060 4.060 20 N -0.983 5.983 21 Si 0.950 3.050 22 H -0.281 1.281 23 H -0.301 1.301 24 H -0.248 1.248 25 C -0.127 4.127 26 C 0.136 3.864 27 H 0.079 0.921 28 C -0.152 4.152 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.416 21.372 -6.361 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 N -0.123 5.123 4 N -0.154 5.154 5 C -0.051 4.051 6 C -0.026 4.026 7 Cl 0.035 6.965 8 C -0.218 4.218 9 C -0.099 4.099 10 C 0.322 3.678 11 O -0.443 6.443 12 N -0.345 5.345 13 C -0.042 4.042 14 C 0.059 3.941 15 H 0.088 0.912 16 N -0.381 5.381 17 C -0.360 4.360 18 H 0.081 0.919 19 C -0.251 4.251 20 N -0.633 5.633 21 Si 0.777 3.223 22 H -0.208 1.208 23 H -0.228 1.228 24 H -0.172 1.172 25 C -0.166 4.166 26 C 0.033 3.967 27 H 0.097 0.903 28 C -0.210 4.210 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.012 22.977 -6.697 25.943 hybrid contribution -0.667 -1.173 0.293 1.380 sum 9.346 21.805 -6.404 24.572 Atomic orbital electron populations 1.20308 0.84518 1.03951 1.04381 1.22500 0.98237 0.89295 0.97674 1.77392 0.85865 1.22197 1.26893 1.48729 1.06757 1.02898 1.57049 1.22280 0.82623 0.94962 1.05280 1.21537 0.90528 0.84499 1.06072 1.98405 1.37350 1.63867 1.96877 1.19122 0.90084 0.95999 1.16627 1.19956 1.04900 0.91297 0.93758 1.20472 0.75859 0.79816 0.91700 1.90606 1.51858 1.54989 1.46870 1.48646 1.66112 1.11273 1.08517 1.22919 1.00503 0.89342 0.91402 1.21306 0.90656 0.91532 0.90625 0.91160 1.42668 1.04009 1.45200 1.46197 1.19036 0.93727 1.11323 1.11918 0.91857 1.25442 1.01878 0.98942 0.98874 1.69869 1.31720 1.31153 1.30536 0.85496 0.80588 0.79330 0.76848 1.20755 1.22827 1.17233 1.23124 0.98969 0.97232 0.97287 1.21920 0.98390 0.93191 0.83220 0.90279 1.22040 1.00931 0.99163 0.98862 0.88272 0.90016 0.90372 0.88544 0.88146 0.87683 0.86350 0.87482 0.91380 0.91288 0.79803 0.93435 0.90538 0.88385 0.91626 0.90387 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.12 71.23 0.72 -0.68 16 2 C 0.09 2.23 7.22 43.10 0.31 2.54 16 3 N -0.30 -7.87 12.57 -47.39 -0.60 -8.47 16 4 N -0.37 -8.50 4.01 -359.26 -1.44 -9.94 16 5 C 0.09 1.17 11.31 127.77 1.44 2.61 16 6 C 0.13 3.13 7.45 83.57 0.62 3.75 16 7 Cl 0.01 0.15 28.34 -2.72 -0.08 0.07 16 8 C -0.21 -5.29 4.60 -20.11 -0.09 -5.38 16 9 C -0.06 -1.41 4.88 29.10 0.14 -1.27 16 10 C 0.53 15.11 7.62 87.65 0.67 15.77 16 11 O -0.56 -18.95 13.70 -3.01 -0.04 -18.99 16 12 N -0.61 -16.70 3.24 -788.11 -2.55 -19.25 16 13 C 0.08 2.45 6.25 86.73 0.54 2.99 16 14 C 0.17 5.45 3.60 46.18 0.17 5.62 16 15 H 0.07 2.37 8.09 -2.39 -0.02 2.35 16 16 N -0.74 -30.39 4.96 -317.32 -1.57 -31.96 16 17 C -0.23 -11.91 10.44 84.03 0.88 -11.04 16 18 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 19 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 20 N -0.98 -60.26 13.97 21.65 0.30 -59.96 16 21 Si 0.95 42.73 27.73 68.60 1.90 44.63 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.25 -9.86 6.52 99.48 0.65 -9.21 16 25 C -0.13 -3.27 6.13 31.99 0.20 -3.08 16 26 C 0.14 3.43 3.76 45.47 0.17 3.60 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 C -0.15 -3.71 8.71 71.98 0.63 -3.09 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.51 7.92 -2.38 -0.02 1.49 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.06 7.81 -2.39 -0.02 1.04 16 34 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.12 2.49 7.93 -2.38 -0.02 2.47 16 36 H 0.11 2.40 7.90 -2.39 -0.02 2.38 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 2.09 8.03 -2.39 -0.02 2.07 16 39 H 0.37 14.64 5.62 -92.71 -0.52 14.12 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.08 1.97 7.93 -2.39 -0.02 1.95 16 42 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.06 1.89 5.89 -2.39 -0.01 1.88 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.45 383.61 3.21 -67.24 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.43 Total: 27.11 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.86 Total: 9.53 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -5.86 Total: -129.59 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.04 Total: -18.99 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.90 Total: 44.63 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.08 Total: 0.07 kcal Total: -70.45 3.21 -67.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989118135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.718 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds