Wall clock time and date at job start Sat Apr 11 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30828 * 125.88859 * 2 1 4 4 N 1.40081 * 108.23749 * 180.28417 * 3 2 1 5 5 C 1.46498 * 126.03883 * 179.71383 * 4 3 2 6 6 C 1.34986 * 107.92563 * 359.72101 * 4 3 2 7 7 Cl 1.73599 * 126.14282 * 180.02562 * 6 4 3 8 8 C 1.35456 * 107.71516 * 359.97438 * 6 4 3 9 9 C 1.50707 * 126.05254 * 180.02562 * 8 6 4 10 10 C 1.50706 * 109.46794 * 90.02248 * 9 8 6 11 11 O 1.21278 * 119.99926 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.64767 * 359.69212 * 12 10 9 14 14 C 1.54910 * 104.83231 * 156.13676 * 13 12 10 15 15 H 1.08991 * 111.00552 * 278.93287 * 14 13 12 16 16 N 1.46506 * 111.03526 * 155.09783 * 14 13 12 17 17 C 1.36935 * 120.00057 * 92.78615 * 16 14 13 18 18 H 1.08004 * 119.99839 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99899 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00120 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99857 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46767 * 90.00364 * 21 19 17 23 23 H 1.48502 * 109.46820 * 210.00011 * 21 19 17 24 24 H 1.48496 * 109.47340 * 330.00219 * 21 19 17 25 25 C 1.55160 * 101.58122 * 37.00939 * 14 13 12 26 26 C 1.47026 * 125.65100 * 180.02562 * 12 10 9 27 27 H 1.08996 * 109.88343 * 61.21833 * 26 12 10 28 28 C 1.53001 * 109.87754 * 300.21195 * 26 12 10 29 29 H 1.08998 * 109.47340 * 270.17376 * 1 2 3 30 30 H 1.08995 * 109.47002 * 30.18070 * 1 2 3 31 31 H 1.09000 * 109.46725 * 150.17709 * 1 2 3 32 32 H 1.09005 * 109.47272 * 270.00502 * 5 4 3 33 33 H 1.08998 * 109.47011 * 30.00659 * 5 4 3 34 34 H 1.08996 * 109.46982 * 150.00544 * 5 4 3 35 35 H 1.09000 * 109.46638 * 330.03279 * 9 8 6 36 36 H 1.08989 * 109.47526 * 210.02478 * 9 8 6 37 37 H 1.09001 * 110.36478 * 274.97629 * 13 12 10 38 38 H 1.08998 * 110.36859 * 37.30006 * 13 12 10 39 39 H 0.97005 * 119.99741 * 272.78480 * 16 14 13 40 40 H 0.97005 * 120.00131 * 179.97438 * 20 19 17 41 41 H 1.08997 * 110.71793 * 206.13154 * 25 14 13 42 42 H 1.09003 * 110.87062 * 82.93498 * 25 14 13 43 43 H 1.08996 * 109.47273 * 61.45295 * 28 26 12 44 44 H 1.09008 * 109.46689 * 181.44986 * 28 26 12 45 45 H 1.09003 * 109.47215 * 301.44793 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2740 1.0599 0.0000 4 7 3.6089 0.6352 -0.0066 5 6 4.7893 1.5027 -0.0147 6 6 3.6153 -0.7147 -0.0043 7 17 5.0221 -1.7318 -0.0096 8 6 2.3270 -1.1330 0.0041 9 6 1.8598 -2.5658 0.0099 10 6 1.7118 -3.0401 1.4327 11 8 1.9607 -2.2885 2.3514 12 7 1.3028 -4.2994 1.6841 13 6 0.9619 -5.3112 0.6675 14 6 1.1618 -6.6722 1.3799 15 1 2.2135 -6.9581 1.3883 16 7 0.3417 -7.7158 0.7597 17 6 0.8666 -8.4994 -0.2331 18 1 1.8850 -8.3478 -0.5591 19 6 0.0898 -9.4886 -0.8204 20 7 -1.1515 -9.6730 -0.4234 21 14 0.8056 -10.5570 -2.1752 22 1 1.4395 -11.7585 -1.5751 23 1 -0.2786 -10.9783 -3.0983 24 1 1.8250 -9.7838 -2.9290 25 6 0.6616 -6.3500 2.8129 26 6 1.1161 -4.8896 3.0177 27 1 0.3541 -4.3349 3.5652 28 6 2.4368 -4.8593 3.7896 29 1 -0.3634 0.0031 1.0276 30 1 -0.3633 0.8883 -0.5166 31 1 -0.3633 -0.8916 -0.5111 32 1 5.0764 1.7160 -1.0444 33 1 4.5580 2.4359 0.4988 34 1 5.6120 1.0016 0.4954 35 1 2.5906 -3.1883 -0.5064 36 1 0.8984 -2.6366 -0.4985 37 1 -0.0750 -5.1970 0.3515 38 1 1.6315 -5.2293 -0.1886 39 1 -0.5731 -7.8517 1.0523 40 1 -1.6945 -10.3640 -0.8340 41 1 1.1339 -7.0072 3.5430 42 1 -0.4241 -6.4276 2.8719 43 1 2.7583 -3.8259 3.9190 44 1 2.2971 -5.3214 4.7669 45 1 3.1957 -5.4090 3.2329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989118136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:55 Heat of formation + Delta-G solvation = 48.274198 kcal Electronic energy + Delta-G solvation = -27652.587858 eV Core-core repulsion = 23733.054652 eV Total energy + Delta-G solvation = -3919.533206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58514 -39.79316 -37.35303 -37.07234 -34.48580 -34.15215 -32.39931 -31.40169 -31.08998 -29.90918 -28.34892 -27.65256 -25.42674 -25.16203 -23.85009 -22.06310 -20.98760 -20.30329 -19.81071 -18.61040 -17.38236 -17.06612 -16.87728 -15.93733 -15.65644 -15.23035 -15.03374 -14.51463 -14.22749 -13.84398 -13.68849 -13.50791 -13.20966 -13.17651 -12.96237 -12.91496 -12.75689 -12.72429 -12.49474 -12.39477 -12.03990 -11.87214 -11.80696 -11.63899 -11.55548 -11.19121 -10.97935 -10.77645 -10.67397 -10.63218 -10.25822 -10.00670 -9.79062 -9.57315 -9.28764 -9.03498 -8.53327 -8.28563 -7.10962 -5.87282 -3.18068 1.27166 1.46446 2.39012 2.42197 2.93153 3.36051 3.38379 3.44374 3.45192 4.13550 4.49918 4.71384 4.78976 4.82451 4.87849 4.92703 5.07825 5.13315 5.16058 5.26280 5.32873 5.47647 5.49561 5.59341 5.61764 5.65635 5.67043 5.75833 5.80707 5.87487 5.88869 6.12865 6.15016 6.23879 6.31728 6.37978 6.47377 6.49890 6.56161 6.71005 6.86166 7.38904 7.61337 7.89097 8.30176 8.49049 9.42340 9.96197 10.31045 11.34655 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.002866 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.672557 B = 9765.800628 C =10234.045025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.099 3.901 3 N -0.277 5.277 4 N -0.369 5.369 5 C 0.099 3.901 6 C 0.136 3.864 7 Cl -0.004 7.004 8 C -0.185 4.185 9 C -0.062 4.062 10 C 0.530 3.470 11 O -0.543 6.543 12 N -0.611 5.611 13 C 0.071 3.929 14 C 0.174 3.826 15 H 0.067 0.933 16 N -0.712 5.712 17 C -0.248 4.248 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.138 4.138 26 C 0.140 3.860 27 H 0.068 0.932 28 C -0.160 4.160 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.729 19.410 1.883 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 N -0.101 5.101 4 N -0.153 5.153 5 C -0.042 4.042 6 C -0.017 4.017 7 Cl 0.024 6.976 8 C -0.198 4.198 9 C -0.103 4.103 10 C 0.319 3.681 11 O -0.421 6.421 12 N -0.345 5.345 13 C -0.055 4.055 14 C 0.062 3.938 15 H 0.085 0.915 16 N -0.351 5.351 17 C -0.379 4.379 18 H 0.090 0.910 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.177 4.177 26 C 0.036 3.964 27 H 0.086 0.914 28 C -0.218 4.218 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.221 0.779 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.289 21.040 2.209 23.105 hybrid contribution 0.363 -1.638 -0.749 1.838 sum 9.652 19.401 1.460 21.719 Atomic orbital electron populations 1.20244 0.86008 1.03526 1.03582 1.22075 0.97084 0.89464 0.98020 1.77445 0.84986 1.21590 1.26056 1.48364 1.06285 1.02646 1.58027 1.21916 0.83669 0.94944 1.03671 1.21346 0.90142 0.83860 1.06352 1.98409 1.38071 1.64154 1.96935 1.18946 0.89606 0.95751 1.15503 1.19945 1.03927 0.91331 0.95121 1.20130 0.76741 0.80209 0.91049 1.90649 1.50728 1.54160 1.46554 1.48631 1.65981 1.11408 1.08475 1.23502 1.00579 0.89764 0.91632 1.21266 0.95880 0.87189 0.89482 0.91514 1.42328 1.13600 1.36287 1.42935 1.19248 0.96994 1.10588 1.11089 0.90962 1.24764 0.96047 0.99517 1.00152 1.69659 1.07520 1.35526 1.44963 0.86196 0.77828 0.80614 0.81550 1.21633 1.21714 1.20624 1.23021 1.01734 0.93531 0.99422 1.21454 0.97146 0.93923 0.83837 0.91410 1.22125 0.97328 1.02771 0.99595 0.89965 0.90582 0.90038 0.90363 0.88739 0.89414 0.88179 0.87712 0.91184 0.91277 0.77855 0.93328 0.90297 0.90647 0.91568 0.92154 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.26 36.01 0.37 -0.39 16 2 C 0.10 1.31 7.22 -82.41 -0.59 0.72 16 3 N -0.28 -3.80 12.57 33.67 0.42 -3.37 16 4 N -0.37 -4.51 4.01 -64.91 -0.26 -4.77 16 5 C 0.10 0.75 11.31 59.85 0.68 1.43 16 6 C 0.14 1.77 7.45 -17.16 -0.13 1.64 16 7 Cl 0.00 -0.04 28.34 -51.86 -1.47 -1.51 16 8 C -0.19 -2.52 4.60 -105.00 -0.48 -3.00 16 9 C -0.06 -0.81 4.84 -29.03 -0.14 -0.95 16 10 C 0.53 8.19 7.63 -10.98 -0.08 8.11 16 11 O -0.54 -9.88 14.95 5.56 0.08 -9.79 16 12 N -0.61 -9.28 3.08 -163.02 -0.50 -9.79 16 13 C 0.07 1.14 6.38 -2.53 -0.02 1.13 16 14 C 0.17 3.14 3.71 -65.78 -0.24 2.90 16 15 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 16 N -0.71 -16.31 5.25 -51.35 -0.27 -16.58 16 17 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 18 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 21 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 C -0.14 -2.12 6.14 -24.90 -0.15 -2.27 16 26 C 0.14 2.06 3.49 -66.95 -0.23 1.83 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 C -0.16 -2.22 9.06 37.16 0.34 -1.89 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.71 7.25 -51.93 -0.38 0.34 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.55 7.80 -51.93 -0.41 0.15 16 35 H 0.10 1.22 7.62 -51.93 -0.40 0.82 16 36 H 0.10 1.17 7.25 -51.94 -0.38 0.79 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.07 7.48 -51.93 -0.39 0.68 16 39 H 0.39 9.48 7.77 -40.82 -0.32 9.16 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.08 1.15 7.83 -51.93 -0.41 0.74 16 42 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 43 H 0.07 1.02 6.76 -51.93 -0.35 0.67 16 44 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -31.96 386.80 -8.18 -40.14 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.78 Total: 7.08 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.94 Total: 2.39 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.12 Total: -60.42 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.47 Total: -1.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.96 -8.18 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989118136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.415 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds