Wall clock time and date at job start Sat Apr 11 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30828 * 125.88859 * 2 1 4 4 N 1.40081 * 108.23749 * 180.28417 * 3 2 1 5 5 C 1.46498 * 126.03883 * 179.71383 * 4 3 2 6 6 C 1.34986 * 107.92563 * 359.72101 * 4 3 2 7 7 Cl 1.73599 * 126.14282 * 180.02562 * 6 4 3 8 8 C 1.35456 * 107.71516 * 359.97438 * 6 4 3 9 9 C 1.50707 * 126.05254 * 180.02562 * 8 6 4 10 10 C 1.50706 * 109.46794 * 90.02248 * 9 8 6 11 11 O 1.21278 * 119.99926 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.64767 * 359.69212 * 12 10 9 14 14 C 1.54910 * 104.83231 * 156.13676 * 13 12 10 15 15 H 1.08991 * 111.00552 * 278.93287 * 14 13 12 16 16 N 1.46506 * 111.03526 * 155.09783 * 14 13 12 17 17 C 1.36935 * 120.00057 * 92.78615 * 16 14 13 18 18 H 1.08004 * 119.99839 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99899 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00120 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99857 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46767 * 90.00364 * 21 19 17 23 23 H 1.48502 * 109.46820 * 210.00011 * 21 19 17 24 24 H 1.48496 * 109.47340 * 330.00219 * 21 19 17 25 25 C 1.55160 * 101.58122 * 37.00939 * 14 13 12 26 26 C 1.47026 * 125.65100 * 180.02562 * 12 10 9 27 27 H 1.08996 * 109.88343 * 61.21833 * 26 12 10 28 28 C 1.53001 * 109.87754 * 300.21195 * 26 12 10 29 29 H 1.08998 * 109.47340 * 270.17376 * 1 2 3 30 30 H 1.08995 * 109.47002 * 30.18070 * 1 2 3 31 31 H 1.09000 * 109.46725 * 150.17709 * 1 2 3 32 32 H 1.09005 * 109.47272 * 270.00502 * 5 4 3 33 33 H 1.08998 * 109.47011 * 30.00659 * 5 4 3 34 34 H 1.08996 * 109.46982 * 150.00544 * 5 4 3 35 35 H 1.09000 * 109.46638 * 330.03279 * 9 8 6 36 36 H 1.08989 * 109.47526 * 210.02478 * 9 8 6 37 37 H 1.09001 * 110.36478 * 274.97629 * 13 12 10 38 38 H 1.08998 * 110.36859 * 37.30006 * 13 12 10 39 39 H 0.97005 * 119.99741 * 272.78480 * 16 14 13 40 40 H 0.97005 * 120.00131 * 179.97438 * 20 19 17 41 41 H 1.08997 * 110.71793 * 206.13154 * 25 14 13 42 42 H 1.09003 * 110.87062 * 82.93498 * 25 14 13 43 43 H 1.08996 * 109.47273 * 61.45295 * 28 26 12 44 44 H 1.09008 * 109.46689 * 181.44986 * 28 26 12 45 45 H 1.09003 * 109.47215 * 301.44793 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2740 1.0599 0.0000 4 7 3.6089 0.6352 -0.0066 5 6 4.7893 1.5027 -0.0147 6 6 3.6153 -0.7147 -0.0043 7 17 5.0221 -1.7318 -0.0096 8 6 2.3270 -1.1330 0.0041 9 6 1.8598 -2.5658 0.0099 10 6 1.7118 -3.0401 1.4327 11 8 1.9607 -2.2885 2.3514 12 7 1.3028 -4.2994 1.6841 13 6 0.9619 -5.3112 0.6675 14 6 1.1618 -6.6722 1.3799 15 1 2.2135 -6.9581 1.3883 16 7 0.3417 -7.7158 0.7597 17 6 0.8666 -8.4994 -0.2331 18 1 1.8850 -8.3478 -0.5591 19 6 0.0898 -9.4886 -0.8204 20 7 -1.1515 -9.6730 -0.4234 21 14 0.8056 -10.5570 -2.1752 22 1 1.4395 -11.7585 -1.5751 23 1 -0.2786 -10.9783 -3.0983 24 1 1.8250 -9.7838 -2.9290 25 6 0.6616 -6.3500 2.8129 26 6 1.1161 -4.8896 3.0177 27 1 0.3541 -4.3349 3.5652 28 6 2.4368 -4.8593 3.7896 29 1 -0.3634 0.0031 1.0276 30 1 -0.3633 0.8883 -0.5166 31 1 -0.3633 -0.8916 -0.5111 32 1 5.0764 1.7160 -1.0444 33 1 4.5580 2.4359 0.4988 34 1 5.6120 1.0016 0.4954 35 1 2.5906 -3.1883 -0.5064 36 1 0.8984 -2.6366 -0.4985 37 1 -0.0750 -5.1970 0.3515 38 1 1.6315 -5.2293 -0.1886 39 1 -0.5731 -7.8517 1.0523 40 1 -1.6945 -10.3640 -0.8340 41 1 1.1339 -7.0072 3.5430 42 1 -0.4241 -6.4276 2.8719 43 1 2.7583 -3.8259 3.9190 44 1 2.2971 -5.3214 4.7669 45 1 3.1957 -5.4090 3.2329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989118136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:54 Heat of formation + Delta-G solvation = 28.960075 kcal Electronic energy + Delta-G solvation = -27653.425381 eV Core-core repulsion = 23733.054652 eV Total energy + Delta-G solvation = -3920.370729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.51582 -41.04955 -38.68938 -37.98977 -35.92536 -35.32492 -33.52436 -33.11399 -32.21819 -30.66985 -29.92701 -28.64315 -26.67349 -26.06685 -25.62554 -23.31717 -22.03364 -21.55528 -20.86979 -19.81631 -19.24934 -18.11224 -17.93781 -17.01608 -16.85321 -16.42204 -16.39357 -15.88953 -15.50036 -15.09686 -14.79812 -14.63414 -14.48821 -14.38030 -14.16773 -14.06286 -13.78651 -13.59767 -13.49451 -13.31357 -13.12303 -13.07104 -12.96646 -12.74677 -12.71251 -12.68877 -12.53232 -12.25586 -12.07153 -11.99496 -11.67113 -11.61904 -11.39139 -11.00193 -10.75229 -10.19158 -9.58391 -9.48590 -8.99514 -7.90370 -5.19610 0.34313 0.52575 1.41478 1.53729 1.54279 1.62244 1.62478 1.72296 2.16378 2.61156 3.31395 3.41903 3.52585 3.86973 3.91800 3.96116 4.00568 4.05493 4.17723 4.20160 4.29448 4.30509 4.41353 4.53239 4.54839 4.57452 4.59905 4.74031 4.77450 4.80212 4.86236 4.94001 4.97671 4.98112 5.08715 5.21083 5.30530 5.39678 5.49114 5.54324 5.60552 5.67377 6.30902 6.45765 6.64656 7.26823 7.38894 8.10866 8.34791 9.32486 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.002866 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.672557 B = 9765.800628 C =10234.045025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.088 3.912 3 N -0.299 5.299 4 N -0.370 5.370 5 C 0.088 3.912 6 C 0.128 3.872 7 Cl 0.007 6.993 8 C -0.206 4.206 9 C -0.057 4.057 10 C 0.532 3.468 11 O -0.571 6.571 12 N -0.609 5.609 13 C 0.085 3.915 14 C 0.168 3.832 15 H 0.064 0.936 16 N -0.722 5.722 17 C -0.239 4.239 18 H 0.080 0.920 19 C -0.069 4.069 20 N -0.967 5.967 21 Si 0.966 3.034 22 H -0.291 1.291 23 H -0.299 1.299 24 H -0.267 1.267 25 C -0.126 4.126 26 C 0.139 3.861 27 H 0.070 0.930 28 C -0.152 4.152 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.377 0.623 40 H 0.250 0.750 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.907 20.122 1.563 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 N -0.124 5.124 4 N -0.154 5.154 5 C -0.052 4.052 6 C -0.027 4.027 7 Cl 0.035 6.965 8 C -0.219 4.219 9 C -0.098 4.098 10 C 0.321 3.679 11 O -0.450 6.450 12 N -0.343 5.343 13 C -0.041 4.041 14 C 0.057 3.943 15 H 0.082 0.918 16 N -0.361 5.361 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.796 3.204 22 H -0.218 1.218 23 H -0.226 1.226 24 H -0.192 1.192 25 C -0.165 4.165 26 C 0.036 3.964 27 H 0.088 0.912 28 C -0.210 4.210 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.140 0.860 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.210 0.790 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.518 21.801 1.898 24.280 hybrid contribution 0.096 -1.766 -0.572 1.859 sum 10.614 20.035 1.326 22.712 Atomic orbital electron populations 1.20336 0.84419 1.04835 1.03682 1.22522 0.98308 0.89268 0.97656 1.77387 0.85851 1.22225 1.26892 1.48731 1.06775 1.02893 1.57042 1.22279 0.82617 0.94947 1.05307 1.21544 0.90547 0.84506 1.06066 1.98406 1.37376 1.63858 1.96877 1.19126 0.90102 0.96043 1.16613 1.19952 1.05102 0.91263 0.93457 1.20539 0.75807 0.79698 0.91816 1.90639 1.51931 1.54755 1.47699 1.48634 1.65888 1.11379 1.08396 1.23173 1.00570 0.88638 0.91683 1.21413 0.95069 0.86819 0.90991 0.91753 1.42439 1.13568 1.37319 1.42812 1.19617 0.97029 1.09867 1.10587 0.90220 1.25474 0.96541 1.01409 1.02776 1.69800 1.08811 1.36461 1.46609 0.85248 0.77029 0.79003 0.79116 1.21832 1.22622 1.19200 1.22915 1.01643 0.94105 0.97841 1.21493 0.97737 0.93287 0.83876 0.91204 1.22047 0.96543 1.01883 1.00500 0.90330 0.89296 0.88763 0.88468 0.87699 0.88204 0.87403 0.85977 0.91665 0.90387 0.79035 0.94079 0.89256 0.90834 0.93115 0.90150 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.26 71.24 0.73 -0.69 16 2 C 0.09 2.23 7.22 43.10 0.31 2.54 16 3 N -0.30 -7.95 12.57 -47.39 -0.60 -8.54 16 4 N -0.37 -8.62 4.01 -359.27 -1.44 -10.07 16 5 C 0.09 1.19 11.31 127.77 1.45 2.64 16 6 C 0.13 3.17 7.45 83.56 0.62 3.80 16 7 Cl 0.01 0.14 28.34 -2.72 -0.08 0.07 16 8 C -0.21 -5.36 4.60 -20.11 -0.09 -5.45 16 9 C -0.06 -1.39 4.84 29.11 0.14 -1.25 16 10 C 0.53 15.72 7.63 87.66 0.67 16.39 16 11 O -0.57 -20.26 14.95 -3.02 -0.05 -20.31 16 12 N -0.61 -17.58 3.08 -788.06 -2.43 -20.01 16 13 C 0.09 2.59 6.38 86.86 0.55 3.15 16 14 C 0.17 5.82 3.71 46.38 0.17 5.99 16 15 H 0.06 2.29 8.09 -2.39 -0.02 2.27 16 16 N -0.72 -32.63 5.25 -316.37 -1.66 -34.29 16 17 C -0.24 -12.12 9.96 84.03 0.84 -11.28 16 18 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 19 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 20 N -0.97 -55.91 13.06 21.65 0.28 -55.63 16 21 Si 0.97 43.58 29.55 68.60 2.03 45.61 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 C -0.13 -3.68 6.14 31.78 0.20 -3.49 16 26 C 0.14 3.88 3.49 45.34 0.16 4.04 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 C -0.15 -3.95 9.06 71.98 0.65 -3.30 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.50 7.25 -2.39 -0.02 1.48 16 32 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.09 7.80 -2.39 -0.02 1.07 16 35 H 0.11 2.43 7.62 -2.39 -0.02 2.41 16 36 H 0.12 2.49 7.25 -2.39 -0.02 2.47 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 2.25 7.48 -2.39 -0.02 2.23 16 39 H 0.38 18.48 7.77 -92.70 -0.72 17.76 16 40 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 41 H 0.09 2.42 7.83 -2.39 -0.02 2.41 16 42 H 0.07 2.20 8.01 -2.39 -0.02 2.18 16 43 H 0.05 1.50 6.76 -2.39 -0.02 1.48 16 44 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -67.43 386.80 3.22 -64.22 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.29 Total: 29.12 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.86 Total: 9.83 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -5.84 Total: -128.54 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.05 Total: -20.31 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.07 kcal Total: -67.43 3.22 -64.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989118136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.177 kcal (2) G-P(sol) polarization free energy of solvation -67.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds