Wall clock time and date at job start Sat Apr 11 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86809 * 119.99612 * 2 1 4 4 H 1.48502 * 109.46788 * 239.99669 * 3 2 1 5 5 H 1.48497 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46982 * 119.99764 * 3 2 1 7 7 C 1.38808 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00420 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.49285 * 127.10325 * 359.97438 * 9 7 2 11 11 C 1.56982 * 106.43828 * 171.66568 * 10 9 7 12 12 C 1.52132 * 100.46569 * 336.09161 * 11 10 9 13 13 N 1.46502 * 111.08090 * 286.47864 * 12 11 10 14 14 C 1.34767 * 119.99999 * 288.29731 * 13 12 11 15 15 O 1.21579 * 120.00238 * 0.02562 * 14 13 12 16 16 C 1.47713 * 120.00149 * 180.02562 * 14 13 12 17 17 C 1.41505 * 126.51957 * 180.02562 * 16 14 13 18 18 C 1.35362 * 105.50288 * 179.73720 * 17 16 14 19 19 N 1.35029 * 107.22900 * 359.97438 * 18 17 16 20 20 C 1.46499 * 124.88588 * 180.02562 * 19 18 17 21 21 F 1.39900 * 109.47451 * 300.00493 * 20 19 18 22 22 F 1.39906 * 109.46909 * 60.00063 * 20 19 18 23 23 N 1.28472 * 110.23305 * 0.02562 * 19 18 17 24 24 C 1.51216 * 122.55763 * 151.79771 * 12 11 10 25 25 C 1.55057 * 104.91560 * 219.10115 * 24 12 11 26 26 C 1.56278 * 105.91786 * 6.67238 * 25 24 12 27 27 C 1.42715 * 127.09962 * 179.97438 * 9 7 2 28 28 H 1.09004 * 108.18060 * 103.43022 * 27 9 7 29 29 H 0.96998 * 119.99763 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.04856 * 290.61646 * 10 9 7 31 31 H 1.08996 * 110.05411 * 52.09374 * 10 9 7 32 32 H 1.09001 * 110.94061 * 218.47658 * 11 10 9 33 33 H 1.08997 * 111.68092 * 94.01227 * 11 10 9 34 34 H 0.96999 * 119.99703 * 108.30192 * 13 12 11 35 35 H 1.07997 * 127.24741 * 359.73103 * 17 16 14 36 36 H 1.08000 * 126.38536 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.47679 * 180.02562 * 20 19 18 38 38 H 1.09005 * 110.41053 * 337.32307 * 24 12 11 39 39 H 1.09000 * 110.41177 * 99.76290 * 24 12 11 40 40 H 1.09002 * 109.84588 * 247.72448 * 25 24 12 41 41 H 1.09002 * 110.54766 * 125.98694 * 25 24 12 42 42 H 1.09001 * 110.97141 * 266.51977 * 26 25 24 43 43 H 1.09007 * 110.96874 * 142.75826 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1558 -2.5727 0.0005 11 6 -0.4123 -4.1059 -0.2177 12 6 0.8807 -4.5064 -0.9121 13 7 0.9084 -4.0219 -2.2944 14 6 0.1158 -4.5910 -3.2240 15 8 -0.6226 -5.5063 -2.9153 16 6 0.1441 -4.1029 -4.6178 17 6 -0.6251 -4.5959 -5.6985 18 6 -0.2700 -3.8452 -6.7674 19 7 0.6558 -2.9584 -6.3435 20 6 1.3045 -1.9547 -7.1909 21 9 1.9918 -2.5939 -8.2283 22 9 0.3347 -1.1023 -7.7299 23 7 0.8861 -3.1213 -5.0901 24 6 1.4599 -5.8997 -0.8128 25 6 2.9918 -5.6879 -0.7001 26 6 3.2026 -4.1451 -0.5675 27 6 1.8810 -3.7027 0.0005 28 1 1.7918 -4.1096 1.0078 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5712 -2.2611 0.9589 31 1 -0.6044 -1.9947 -0.8073 32 1 -1.2735 -4.2684 -0.8659 33 1 -0.5299 -4.6333 0.7289 34 1 1.4972 -3.2914 -2.5406 35 1 -1.3439 -5.4015 -5.6753 36 1 -0.6558 -3.9377 -7.7719 37 1 2.0074 -1.3741 -6.5935 38 1 1.0902 -6.4023 0.0809 39 1 1.2149 -6.4776 -1.7039 40 1 3.4838 -6.0584 -1.5995 41 1 3.3848 -6.1977 0.1795 42 1 3.3799 -3.6904 -1.5422 43 1 4.0180 -3.9205 0.1201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990891847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:00 Heat of formation + Delta-G solvation = 0.356589 kcal Electronic energy + Delta-G solvation = -30889.631749 eV Core-core repulsion = 26416.224000 eV Total energy + Delta-G solvation = -4473.407749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.74684 -47.83111 -42.72663 -40.37804 -37.93355 -34.42661 -33.24710 -32.82785 -31.69958 -30.88428 -29.80465 -26.95626 -26.89197 -25.69007 -24.09117 -23.41344 -21.73774 -20.60659 -20.33255 -19.57382 -18.90370 -18.57678 -18.29237 -17.85374 -17.11669 -16.46725 -15.73492 -15.64381 -14.78841 -14.75976 -14.59553 -14.55225 -14.23297 -14.15215 -14.04386 -13.92283 -13.75914 -13.39416 -13.18917 -12.58695 -12.44850 -12.31808 -11.88969 -11.40124 -11.36917 -11.11689 -11.01064 -10.90850 -10.79199 -10.50089 -10.31743 -10.03506 -9.96910 -9.74573 -9.68090 -9.61956 -9.38940 -9.20155 -8.66995 -8.45819 -6.87076 -5.75030 -3.09708 1.39703 1.53606 2.02942 3.13536 3.36699 3.41754 3.43120 3.52098 3.68599 3.77406 4.21151 4.44474 4.48023 4.60713 4.65326 5.09282 5.25798 5.27722 5.47527 5.47843 5.60933 5.62310 5.74994 5.82870 5.96594 6.00222 6.16497 6.17867 6.25786 6.30466 6.33255 6.39203 6.44875 6.51515 6.66893 6.83639 6.91637 7.17539 7.51568 7.55950 7.60138 7.77632 8.09813 8.19393 8.64287 9.12592 9.79220 10.48226 11.37143 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.008887 B = 0.004706 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.928164 B = 5948.669392 C = 7838.384871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.584 5.584 10 C 0.179 3.821 11 C -0.140 4.140 12 C 0.130 3.870 13 N -0.672 5.672 14 C 0.600 3.400 15 O -0.538 6.538 16 C 0.020 3.980 17 C -0.170 4.170 18 C -0.008 4.008 19 N -0.350 5.350 20 C 0.497 3.503 21 F -0.177 7.177 22 F -0.175 7.175 23 N -0.242 5.242 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.116 4.116 27 C 0.159 3.841 28 H 0.025 0.975 29 H 0.253 0.747 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.169 0.831 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 -8.382 -12.915 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.308 5.308 10 C 0.055 3.945 11 C -0.179 4.179 12 C 0.042 3.958 13 N -0.322 5.322 14 C 0.383 3.617 15 O -0.414 6.414 16 C -0.145 4.145 17 C -0.197 4.197 18 C -0.147 4.147 19 N -0.146 5.146 20 C 0.363 3.637 21 F -0.158 7.158 22 F -0.156 7.156 23 N -0.075 5.075 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.154 4.154 27 C 0.049 3.951 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.247 0.753 35 H 0.186 0.814 36 H 0.202 0.798 37 H 0.190 0.810 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.053 -7.835 -12.479 15.048 hybrid contribution -0.029 0.834 -0.679 1.076 sum 3.024 -7.001 -13.158 15.209 Atomic orbital electron populations 1.69905 1.04893 1.25239 1.56441 1.24786 0.95597 0.97596 1.02049 0.86254 0.78485 0.83437 0.77870 1.21225 1.21693 1.21181 1.18950 0.90218 0.82241 1.44430 0.90364 1.43669 1.01754 0.99248 1.86098 1.22159 0.83171 0.88402 1.00777 1.22929 0.96261 0.99518 0.99154 1.21591 0.98857 0.94064 0.81244 1.45603 1.41673 1.36720 1.08160 1.16768 0.80636 0.82343 0.81991 1.90759 1.40675 1.29710 1.80257 1.22407 0.99035 0.96544 0.96521 1.21880 1.03931 1.03594 0.90301 1.22936 0.95995 0.94034 1.01732 1.46493 1.32676 1.27969 1.07506 1.21190 0.82826 0.79369 0.80282 1.93140 1.78603 1.83286 1.60800 1.93155 1.66051 1.69248 1.87147 1.73626 1.22971 1.18572 0.92293 1.21764 0.94886 0.96065 1.02353 1.22712 0.95838 0.95959 1.00988 1.21858 0.97895 0.94552 1.01132 1.20848 0.91601 0.87389 0.95281 0.95830 0.93645 0.94678 0.91634 0.91324 0.91405 0.75303 0.81374 0.79817 0.80973 0.91082 0.91096 0.92339 0.91858 0.91614 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.55 55.49 0.59 -25.72 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.06 10.28 -15.06 -0.15 -6.22 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.58 -14.08 3.10 -162.22 -0.50 -14.59 16 10 C 0.18 4.28 5.34 -0.34 0.00 4.28 16 11 C -0.14 -2.78 6.26 -25.02 -0.16 -2.94 16 12 C 0.13 2.39 0.42 -130.72 -0.05 2.34 16 13 N -0.67 -12.40 4.35 -47.57 -0.21 -12.60 16 14 C 0.60 10.93 7.13 -12.39 -0.09 10.84 16 15 O -0.54 -10.65 15.08 5.30 0.08 -10.57 16 16 C 0.02 0.32 7.13 -82.76 -0.59 -0.27 16 17 C -0.17 -2.24 10.81 -39.36 -0.43 -2.67 16 18 C -0.01 -0.08 11.33 -17.17 -0.19 -0.28 16 19 N -0.35 -4.30 3.56 -66.62 -0.24 -4.54 16 20 C 0.50 4.52 6.24 59.85 0.37 4.90 16 21 F -0.18 -1.59 17.46 2.25 0.04 -1.55 16 22 F -0.17 -1.73 17.46 2.25 0.04 -1.69 16 23 N -0.24 -3.71 11.67 33.42 0.39 -3.32 16 24 C -0.11 -1.77 6.01 -26.54 -0.16 -1.93 16 25 C -0.12 -1.65 6.91 -23.88 -0.17 -1.82 16 26 C -0.12 -1.93 6.45 -26.22 -0.17 -2.10 16 27 C 0.16 3.16 2.61 -68.73 -0.18 2.98 16 28 H 0.02 0.50 7.99 -51.93 -0.41 0.08 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.03 0.92 7.98 -51.93 -0.41 0.50 16 31 H 0.07 1.77 7.05 -51.93 -0.37 1.40 16 32 H 0.07 1.41 7.17 -51.93 -0.37 1.03 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.41 7.91 7.51 -40.82 -0.31 7.61 16 35 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.17 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.17 6.84 -51.93 -0.36 0.81 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.12 7.37 -51.93 -0.38 0.74 16 43 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -31.35 359.55 -7.02 -38.37 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.54 Total: 7.41 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -2.06 Total: 6.93 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.03 Total: -60.77 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.35 -7.02 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990891847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.725 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds