Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86809 * 119.99612 * 2 1 4 4 H 1.48502 * 109.46788 * 239.99669 * 3 2 1 5 5 H 1.48497 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46982 * 119.99764 * 3 2 1 7 7 C 1.38808 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00420 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.49285 * 127.10325 * 359.97438 * 9 7 2 11 11 C 1.56982 * 106.43828 * 171.66568 * 10 9 7 12 12 C 1.52132 * 100.46569 * 336.09161 * 11 10 9 13 13 N 1.46502 * 111.08090 * 286.47864 * 12 11 10 14 14 C 1.34767 * 119.99999 * 288.29731 * 13 12 11 15 15 O 1.21579 * 120.00238 * 0.02562 * 14 13 12 16 16 C 1.47713 * 120.00149 * 180.02562 * 14 13 12 17 17 C 1.41505 * 126.51957 * 180.02562 * 16 14 13 18 18 C 1.35362 * 105.50288 * 179.73720 * 17 16 14 19 19 N 1.35029 * 107.22900 * 359.97438 * 18 17 16 20 20 C 1.46499 * 124.88588 * 180.02562 * 19 18 17 21 21 F 1.39900 * 109.47451 * 300.00493 * 20 19 18 22 22 F 1.39906 * 109.46909 * 60.00063 * 20 19 18 23 23 N 1.28472 * 110.23305 * 0.02562 * 19 18 17 24 24 C 1.51216 * 122.55763 * 151.79771 * 12 11 10 25 25 C 1.55057 * 104.91560 * 219.10115 * 24 12 11 26 26 C 1.56278 * 105.91786 * 6.67238 * 25 24 12 27 27 C 1.42715 * 127.09962 * 179.97438 * 9 7 2 28 28 H 1.09004 * 108.18060 * 103.43022 * 27 9 7 29 29 H 0.96998 * 119.99763 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.04856 * 290.61646 * 10 9 7 31 31 H 1.08996 * 110.05411 * 52.09374 * 10 9 7 32 32 H 1.09001 * 110.94061 * 218.47658 * 11 10 9 33 33 H 1.08997 * 111.68092 * 94.01227 * 11 10 9 34 34 H 0.96999 * 119.99703 * 108.30192 * 13 12 11 35 35 H 1.07997 * 127.24741 * 359.73103 * 17 16 14 36 36 H 1.08000 * 126.38536 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.47679 * 180.02562 * 20 19 18 38 38 H 1.09005 * 110.41053 * 337.32307 * 24 12 11 39 39 H 1.09000 * 110.41177 * 99.76290 * 24 12 11 40 40 H 1.09002 * 109.84588 * 247.72448 * 25 24 12 41 41 H 1.09002 * 110.54766 * 125.98694 * 25 24 12 42 42 H 1.09001 * 110.97141 * 266.51977 * 26 25 24 43 43 H 1.09007 * 110.96874 * 142.75826 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1558 -2.5727 0.0005 11 6 -0.4123 -4.1059 -0.2177 12 6 0.8807 -4.5064 -0.9121 13 7 0.9084 -4.0219 -2.2944 14 6 0.1158 -4.5910 -3.2240 15 8 -0.6226 -5.5063 -2.9153 16 6 0.1441 -4.1029 -4.6178 17 6 -0.6251 -4.5959 -5.6985 18 6 -0.2700 -3.8452 -6.7674 19 7 0.6558 -2.9584 -6.3435 20 6 1.3045 -1.9547 -7.1909 21 9 1.9918 -2.5939 -8.2283 22 9 0.3347 -1.1023 -7.7299 23 7 0.8861 -3.1213 -5.0901 24 6 1.4599 -5.8997 -0.8128 25 6 2.9918 -5.6879 -0.7001 26 6 3.2026 -4.1451 -0.5675 27 6 1.8810 -3.7027 0.0005 28 1 1.7918 -4.1096 1.0078 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5712 -2.2611 0.9589 31 1 -0.6044 -1.9947 -0.8073 32 1 -1.2735 -4.2684 -0.8659 33 1 -0.5299 -4.6333 0.7289 34 1 1.4972 -3.2914 -2.5406 35 1 -1.3439 -5.4015 -5.6753 36 1 -0.6558 -3.9377 -7.7719 37 1 2.0074 -1.3741 -6.5935 38 1 1.0902 -6.4023 0.0809 39 1 1.2149 -6.4776 -1.7039 40 1 3.4838 -6.0584 -1.5995 41 1 3.3848 -6.1977 0.1795 42 1 3.3799 -3.6904 -1.5422 43 1 4.0180 -3.9205 0.1201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990891847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = -19.538172 kcal Electronic energy + Delta-G solvation = -30890.494450 eV Core-core repulsion = 26416.224000 eV Total energy + Delta-G solvation = -4474.270451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.49402 -48.57483 -43.75586 -41.88277 -39.41013 -36.15707 -34.58075 -33.99317 -33.47704 -32.01614 -31.42332 -28.55348 -27.98368 -27.08629 -25.94874 -24.59958 -22.70534 -22.23817 -21.60874 -21.18044 -20.10381 -19.72878 -19.06795 -18.75588 -18.35785 -18.19106 -17.37737 -16.74536 -16.42195 -16.02774 -15.80313 -15.77118 -15.66334 -15.35564 -15.19051 -14.90927 -14.84942 -14.67373 -14.30662 -14.09521 -14.04746 -13.51391 -13.20348 -13.04147 -12.95018 -12.84424 -12.60951 -12.20403 -12.19730 -12.11576 -12.05338 -11.79680 -11.55948 -11.35090 -11.22206 -10.79294 -10.73551 -10.67148 -10.37319 -9.92938 -8.85829 -7.82095 -5.17723 0.28374 0.67284 0.98881 1.47458 1.49887 1.55985 2.17119 2.36319 2.40845 2.51599 3.01865 3.10032 3.37626 3.46451 3.51312 3.68110 3.76569 3.90883 4.03250 4.11187 4.28046 4.40902 4.44431 4.51206 4.59002 4.60479 4.65324 4.82448 4.95271 4.99191 5.08290 5.10369 5.13060 5.24468 5.29450 5.42073 5.50582 5.56911 5.61342 5.67469 5.78255 6.19603 6.41757 6.70715 7.05926 7.20990 7.78737 8.51017 9.29616 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.008887 B = 0.004706 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.928164 B = 5948.669392 C = 7838.384871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.063 4.063 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.301 1.301 6 H -0.279 1.279 7 C -0.230 4.230 8 H 0.088 0.912 9 N -0.598 5.598 10 C 0.191 3.809 11 C -0.128 4.128 12 C 0.136 3.864 13 N -0.675 5.675 14 C 0.599 3.401 15 O -0.559 6.559 16 C -0.011 4.011 17 C -0.183 4.183 18 C 0.010 3.990 19 N -0.349 5.349 20 C 0.498 3.502 21 F -0.173 7.173 22 F -0.177 7.177 23 N -0.261 5.261 24 C -0.107 4.107 25 C -0.103 4.103 26 C -0.111 4.111 27 C 0.147 3.853 28 H 0.024 0.976 29 H 0.244 0.756 30 H 0.002 0.998 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.405 0.595 35 H 0.180 0.820 36 H 0.225 0.775 37 H 0.197 0.803 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -9.461 -14.293 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.256 4.256 3 Si 0.801 3.199 4 H -0.200 1.200 5 H -0.228 1.228 6 H -0.205 1.205 7 C -0.359 4.359 8 H 0.106 0.894 9 N -0.321 5.321 10 C 0.066 3.934 11 C -0.167 4.167 12 C 0.048 3.952 13 N -0.324 5.324 14 C 0.383 3.617 15 O -0.437 6.437 16 C -0.174 4.174 17 C -0.210 4.210 18 C -0.130 4.130 19 N -0.147 5.147 20 C 0.366 3.634 21 F -0.154 7.154 22 F -0.159 7.159 23 N -0.094 5.094 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.150 4.150 27 C 0.038 3.962 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.020 0.980 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.241 0.759 35 H 0.197 0.803 36 H 0.241 0.759 37 H 0.214 0.786 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.874 -8.945 -13.864 17.204 hybrid contribution -0.602 1.172 -0.308 1.353 sum 4.272 -7.773 -14.172 16.718 Atomic orbital electron populations 1.70136 1.06402 1.25139 1.58380 1.25570 0.96327 1.00825 1.02850 0.85240 0.77106 0.79219 0.78295 1.19962 1.22809 1.20515 1.19340 0.90827 0.83146 1.42559 0.89420 1.43790 1.01879 1.00458 1.85976 1.21817 0.83388 0.90702 0.97464 1.22787 0.97078 0.96611 1.00229 1.21608 0.96972 0.95560 0.81013 1.45634 1.41832 1.36649 1.08269 1.17038 0.79908 0.81891 0.82836 1.90727 1.41363 1.30645 1.80967 1.22262 1.01024 0.98036 0.96120 1.22112 1.04299 1.04549 0.90006 1.23544 0.94433 0.92271 1.02785 1.46847 1.32575 1.28294 1.06948 1.21543 0.82772 0.78801 0.80272 1.93151 1.78355 1.83277 1.60623 1.93153 1.66375 1.69172 1.87166 1.73539 1.23458 1.18645 0.93804 1.21766 0.96030 0.93942 1.02845 1.22652 0.94485 0.93934 1.03001 1.21866 0.96141 0.96319 1.00646 1.21074 0.94147 0.85279 0.95702 0.95894 0.94659 0.97968 0.95464 0.92207 0.89527 0.75927 0.80264 0.75861 0.78633 0.89631 0.91554 0.90768 0.89354 0.92262 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.86 10.55 21.65 0.23 -56.64 16 2 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 3 Si 0.97 44.72 29.55 68.60 2.03 46.74 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.23 -12.23 10.28 84.03 0.86 -11.36 16 8 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.60 -29.35 3.10 -667.15 -2.07 -31.42 16 10 C 0.19 9.59 5.34 87.24 0.47 10.05 16 11 C -0.13 -5.20 6.26 31.71 0.20 -5.00 16 12 C 0.14 4.95 0.42 4.31 0.00 4.95 16 13 N -0.67 -25.12 4.35 -422.67 -1.84 -26.95 16 14 C 0.60 22.04 7.13 86.75 0.62 22.66 16 15 O -0.56 -22.28 15.08 -3.97 -0.06 -22.34 16 16 C -0.01 -0.37 7.13 42.46 0.30 -0.06 16 17 C -0.18 -4.63 10.81 22.41 0.24 -4.38 16 18 C 0.01 0.19 11.33 83.54 0.95 1.14 16 19 N -0.35 -8.01 3.56 -364.69 -1.30 -9.31 16 20 C 0.50 8.00 6.24 127.77 0.80 8.80 16 21 F -0.17 -2.68 17.46 44.97 0.79 -1.89 16 22 F -0.18 -3.14 17.46 44.97 0.79 -2.35 16 23 N -0.26 -7.84 11.67 -48.17 -0.56 -8.40 16 24 C -0.11 -3.16 6.01 30.72 0.18 -2.98 16 25 C -0.10 -2.58 6.91 32.44 0.22 -2.35 16 26 C -0.11 -3.49 6.45 30.93 0.20 -3.29 16 27 C 0.15 5.74 2.61 46.46 0.12 5.86 16 28 H 0.02 0.94 7.99 -2.39 -0.02 0.92 16 29 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.00 0.12 7.98 -2.39 -0.02 0.10 16 31 H 0.03 1.56 7.05 -2.39 -0.02 1.54 16 32 H 0.06 2.52 7.17 -2.39 -0.02 2.51 16 33 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.40 15.88 7.51 -92.71 -0.70 15.18 16 35 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.22 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.20 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.07 2.06 6.84 -2.39 -0.02 2.04 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 42 H 0.06 1.93 7.37 -2.39 -0.02 1.92 16 43 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -70.20 359.55 3.99 -66.21 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.36 Total: 25.32 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 5.63 Total: 21.03 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -5.54 Total: -132.71 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 1.57 Total: -4.24 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.20 3.99 -66.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990891847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.667 kcal (2) G-P(sol) polarization free energy of solvation -70.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds