Wall clock time and date at job start Sat Apr 11 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99857 * 2 1 4 4 H 1.48505 * 109.46838 * 274.97232 * 3 2 1 5 5 H 1.48498 * 109.47212 * 34.97189 * 3 2 1 6 6 H 1.48496 * 109.47125 * 154.97234 * 3 2 1 7 7 C 1.38814 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99648 * 171.87751 * 7 2 1 9 9 N 1.36936 * 119.99982 * 351.87499 * 7 2 1 10 10 C 1.47362 * 125.58197 * 346.52165 * 9 7 2 11 11 C 1.54869 * 104.82143 * 204.68351 * 10 9 7 12 12 C 1.54915 * 101.76573 * 322.92555 * 11 10 9 13 13 N 1.46503 * 112.33560 * 273.78816 * 12 11 10 14 14 C 1.34780 * 119.99481 * 298.98504 * 13 12 11 15 15 O 1.21571 * 120.00092 * 0.02562 * 14 13 12 16 16 C 1.47710 * 119.99652 * 179.97438 * 14 13 12 17 17 C 1.41503 * 126.51582 * 179.71087 * 16 14 13 18 18 C 1.35372 * 105.50220 * 179.84238 * 17 16 14 19 19 N 1.35043 * 107.22445 * 0.41705 * 18 17 16 20 20 C 1.46497 * 124.87915 * 179.72042 * 19 18 17 21 21 F 1.39906 * 109.46925 * 209.97268 * 20 19 18 22 22 F 1.39898 * 109.47849 * 329.97827 * 20 19 18 23 23 N 1.28462 * 110.23248 * 359.72482 * 19 18 17 24 24 C 1.53582 * 109.08609 * 148.66942 * 12 11 10 25 25 C 1.54216 * 106.67300 * 246.92656 * 24 12 11 26 26 C 1.54747 * 104.16338 * 24.94096 * 25 24 12 27 27 C 1.46975 * 125.57607 * 166.20753 * 9 7 2 28 28 H 1.08998 * 111.81797 * 300.94531 * 27 9 7 29 29 H 0.96999 * 119.99842 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.36756 * 323.51522 * 10 9 7 31 31 H 1.09002 * 110.37466 * 85.84378 * 10 9 7 32 32 H 1.08998 * 110.97021 * 81.05081 * 11 10 9 33 33 H 1.09005 * 110.96732 * 204.77276 * 11 10 9 34 34 H 0.96995 * 120.00099 * 118.98323 * 13 12 11 35 35 H 1.07995 * 127.25225 * 0.02562 * 17 16 14 36 36 H 1.07995 * 126.38497 * 180.13951 * 18 17 16 37 37 H 1.09008 * 109.47090 * 89.97910 * 20 19 18 38 38 H 1.08998 * 110.01922 * 6.23483 * 24 12 11 39 39 H 1.09006 * 110.01417 * 127.57841 * 24 12 11 40 40 H 1.09003 * 110.49131 * 143.61587 * 25 24 12 41 41 H 1.09003 * 110.49236 * 266.26618 * 25 24 12 42 42 H 1.08999 * 110.66922 * 80.61953 * 26 25 24 43 43 H 1.09000 * 110.67577 * 203.58903 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3926 2.1071 -1.3949 5 1 1.5041 2.6200 0.8025 6 1 3.5963 1.4122 0.5923 7 6 2.0103 -1.2022 0.0005 8 1 3.0822 -1.2069 -0.1316 9 7 1.3359 -2.3820 0.1687 10 6 -0.0564 -2.5153 0.6326 11 6 -0.1349 -3.9343 1.2479 12 6 0.7766 -4.7439 0.2921 13 7 0.0522 -5.2405 -0.8805 14 6 -0.9865 -6.0848 -0.7230 15 8 -1.3227 -6.4337 0.3919 16 6 -1.7172 -6.5851 -1.9052 17 6 -2.8175 -7.4749 -1.9007 18 6 -3.1530 -7.6420 -3.2015 19 7 -2.2942 -6.9011 -3.9344 20 6 -2.3066 -6.8059 -5.3962 21 9 -1.0066 -6.5767 -5.8596 22 9 -2.7906 -8.0016 -5.9375 23 7 -1.4648 -6.2921 -3.1653 24 6 1.4518 -5.8756 1.0808 25 6 2.9586 -5.5496 1.1203 26 6 3.0181 -4.0129 0.9481 27 6 1.8803 -3.7225 -0.0902 28 1 2.2018 -3.8361 -1.1255 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2784 -1.7614 1.3880 31 1 -0.7462 -2.4270 -0.2068 32 1 0.2605 -3.9415 2.2636 33 1 -1.1570 -4.3126 1.2267 34 1 0.3202 -4.9618 -1.7700 35 1 -3.2918 -7.9236 -1.0405 36 1 -3.9549 -8.2570 -3.5823 37 1 -2.9516 -5.9817 -5.7011 38 1 1.0517 -5.9147 2.0940 39 1 1.2887 -6.8292 0.5786 40 1 3.3875 -5.8431 2.0784 41 1 3.4781 -6.0459 0.3006 42 1 2.8162 -3.5115 1.8947 43 1 3.9862 -3.7073 0.5513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990891857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:07 Heat of formation + Delta-G solvation = -12.914999 kcal Electronic energy + Delta-G solvation = -30327.682226 eV Core-core repulsion = 25853.698978 eV Total energy + Delta-G solvation = -4473.983249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.85084 -47.94440 -42.84803 -40.00820 -37.90148 -34.20558 -33.50133 -33.01139 -31.47726 -30.98739 -29.66680 -27.17970 -26.65208 -25.85093 -23.80944 -23.31030 -21.90962 -20.93071 -19.97474 -19.48168 -19.07959 -18.70408 -18.64451 -17.78819 -17.07885 -16.90090 -15.78070 -15.64623 -14.93117 -14.86053 -14.72901 -14.48607 -14.34910 -14.19871 -13.94402 -13.69915 -13.59004 -13.46945 -12.99438 -12.79245 -12.66571 -12.12474 -11.83123 -11.66206 -11.22152 -11.15918 -10.99675 -10.74377 -10.65642 -10.49711 -10.19859 -10.15305 -9.85793 -9.78002 -9.67686 -9.64024 -9.51758 -9.48890 -8.59059 -8.49408 -6.75642 -5.72268 -3.06984 1.24773 1.47753 1.90723 2.99023 3.34143 3.40431 3.46516 3.48329 3.51215 3.53852 3.93120 4.36970 4.49908 4.54877 4.88166 5.06388 5.17143 5.34390 5.37908 5.51080 5.54156 5.68114 5.83197 5.88889 6.00627 6.05624 6.11672 6.18489 6.19384 6.30224 6.36221 6.43739 6.55658 6.62771 6.79421 6.81160 7.01043 7.14799 7.43670 7.55198 7.66865 7.81738 7.90365 8.28725 8.47504 9.21467 9.83569 10.51929 11.40237 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.003323 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.618848 B = 8424.311269 C = 9550.614351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.075 0.925 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.145 4.145 12 C 0.160 3.840 13 N -0.688 5.688 14 C 0.601 3.399 15 O -0.527 6.527 16 C 0.013 3.987 17 C -0.168 4.168 18 C -0.007 4.007 19 N -0.353 5.353 20 C 0.505 3.495 21 F -0.166 7.166 22 F -0.176 7.176 23 N -0.244 5.244 24 C -0.111 4.111 25 C -0.124 4.124 26 C -0.129 4.129 27 C 0.161 3.839 28 H 0.051 0.949 29 H 0.252 0.748 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.406 0.594 35 H 0.170 0.830 36 H 0.189 0.811 37 H 0.165 0.835 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 -16.759 -8.537 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.317 5.317 10 C 0.051 3.949 11 C -0.184 4.184 12 C 0.074 3.926 13 N -0.337 5.337 14 C 0.384 3.616 15 O -0.402 6.402 16 C -0.151 4.151 17 C -0.195 4.195 18 C -0.147 4.147 19 N -0.151 5.151 20 C 0.372 3.628 21 F -0.147 7.147 22 F -0.158 7.158 23 N -0.077 5.077 24 C -0.150 4.150 25 C -0.162 4.162 26 C -0.169 4.169 27 C 0.053 3.947 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.242 0.758 35 H 0.188 0.812 36 H 0.206 0.794 37 H 0.181 0.819 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.529 -16.139 -8.617 19.113 hybrid contribution -0.030 0.418 -0.295 0.513 sum -5.559 -15.721 -8.912 18.907 Atomic orbital electron populations 1.69973 1.04984 1.25106 1.56139 1.24867 0.95557 0.97794 1.01957 0.86161 0.78810 0.83707 0.77427 1.21709 1.21714 1.20562 1.18979 0.90739 0.82516 1.43352 0.90712 1.44479 1.11064 0.99550 1.76608 1.21381 0.85794 0.90957 0.96789 1.23346 0.99186 0.98119 0.97733 1.21724 0.92459 0.93052 0.85360 1.45808 1.31517 1.45815 1.10602 1.16770 0.79725 0.78949 0.86117 1.90783 1.66842 1.58779 1.23786 1.22393 0.99811 1.02051 0.90862 1.21909 0.98750 1.02018 0.96830 1.22855 0.99446 1.00909 0.91447 1.46721 1.24907 1.36379 1.07090 1.21499 0.81467 0.85628 0.74220 1.93170 1.39672 1.94447 1.87378 1.93139 1.87757 1.50378 1.84483 1.73645 1.14292 1.17870 1.01928 1.22276 0.95028 0.97301 1.00390 1.22340 0.95726 0.97371 1.00775 1.23239 0.99235 0.93672 1.00767 1.22168 0.90897 0.85771 0.95860 0.93176 0.93783 0.91719 0.95609 0.91268 0.91094 0.75836 0.81208 0.79395 0.81896 0.91020 0.92264 0.92201 0.92303 0.90807 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.76 55.49 0.60 -26.23 16 2 C 0.00 -0.13 5.40 -17.43 -0.09 -0.23 16 3 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.19 9.99 -15.06 -0.15 -6.34 16 8 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 9 N -0.59 -14.75 3.04 -159.90 -0.49 -15.24 16 10 C 0.18 4.32 5.38 -2.59 -0.01 4.31 16 11 C -0.14 -2.96 5.71 -24.74 -0.14 -3.11 16 12 C 0.16 2.96 0.74 -129.36 -0.10 2.86 16 13 N -0.69 -11.95 5.22 -46.31 -0.24 -12.19 16 14 C 0.60 10.28 7.02 -12.39 -0.09 10.19 16 15 O -0.53 -9.99 14.74 5.30 0.08 -9.91 16 16 C 0.01 0.19 7.13 -82.76 -0.59 -0.40 16 17 C -0.17 -1.94 10.81 -39.36 -0.43 -2.37 16 18 C -0.01 -0.06 10.98 -17.16 -0.19 -0.25 16 19 N -0.35 -3.68 3.68 -66.62 -0.24 -3.93 16 20 C 0.50 3.57 6.56 59.85 0.39 3.97 16 21 F -0.17 -1.62 17.26 2.25 0.04 -1.58 16 22 F -0.18 -1.18 16.96 2.25 0.04 -1.14 16 23 N -0.24 -3.38 11.41 33.42 0.38 -3.00 16 24 C -0.11 -1.82 5.30 -25.79 -0.14 -1.96 16 25 C -0.12 -1.86 6.84 -25.18 -0.17 -2.04 16 26 C -0.13 -2.32 6.30 -23.78 -0.15 -2.47 16 27 C 0.16 3.29 3.78 -64.50 -0.24 3.04 16 28 H 0.05 1.03 7.95 -51.93 -0.41 0.62 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.06 1.77 7.09 -51.93 -0.37 1.40 16 31 H 0.03 0.70 8.02 -51.93 -0.42 0.28 16 32 H 0.07 1.38 7.63 -51.93 -0.40 0.98 16 33 H 0.07 1.47 6.53 -51.93 -0.34 1.14 16 34 H 0.41 6.86 8.19 -40.82 -0.33 6.53 16 35 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.19 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.16 0.49 8.14 -51.92 -0.42 0.06 16 38 H 0.07 1.19 7.38 -51.93 -0.38 0.80 16 39 H 0.06 0.96 7.60 -51.93 -0.39 0.56 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -33.11 359.22 -7.10 -40.21 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.55 Total: 5.46 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.10 Total: 5.21 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.01 Total: -60.58 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.11 -7.10 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990891857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.294 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds