Wall clock time and date at job start Sat Apr 11 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99857 * 2 1 4 4 H 1.48505 * 109.46838 * 274.97232 * 3 2 1 5 5 H 1.48498 * 109.47212 * 34.97189 * 3 2 1 6 6 H 1.48496 * 109.47125 * 154.97234 * 3 2 1 7 7 C 1.38814 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99648 * 171.87751 * 7 2 1 9 9 N 1.36936 * 119.99982 * 351.87499 * 7 2 1 10 10 C 1.47362 * 125.58197 * 346.52165 * 9 7 2 11 11 C 1.54869 * 104.82143 * 204.68351 * 10 9 7 12 12 C 1.54915 * 101.76573 * 322.92555 * 11 10 9 13 13 N 1.46503 * 112.33560 * 273.78816 * 12 11 10 14 14 C 1.34780 * 119.99481 * 298.98504 * 13 12 11 15 15 O 1.21571 * 120.00092 * 0.02562 * 14 13 12 16 16 C 1.47710 * 119.99652 * 179.97438 * 14 13 12 17 17 C 1.41503 * 126.51582 * 179.71087 * 16 14 13 18 18 C 1.35372 * 105.50220 * 179.84238 * 17 16 14 19 19 N 1.35043 * 107.22445 * 0.41705 * 18 17 16 20 20 C 1.46497 * 124.87915 * 179.72042 * 19 18 17 21 21 F 1.39906 * 109.46925 * 209.97268 * 20 19 18 22 22 F 1.39898 * 109.47849 * 329.97827 * 20 19 18 23 23 N 1.28462 * 110.23248 * 359.72482 * 19 18 17 24 24 C 1.53582 * 109.08609 * 148.66942 * 12 11 10 25 25 C 1.54216 * 106.67300 * 246.92656 * 24 12 11 26 26 C 1.54747 * 104.16338 * 24.94096 * 25 24 12 27 27 C 1.46975 * 125.57607 * 166.20753 * 9 7 2 28 28 H 1.08998 * 111.81797 * 300.94531 * 27 9 7 29 29 H 0.96999 * 119.99842 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.36756 * 323.51522 * 10 9 7 31 31 H 1.09002 * 110.37466 * 85.84378 * 10 9 7 32 32 H 1.08998 * 110.97021 * 81.05081 * 11 10 9 33 33 H 1.09005 * 110.96732 * 204.77276 * 11 10 9 34 34 H 0.96995 * 120.00099 * 118.98323 * 13 12 11 35 35 H 1.07995 * 127.25225 * 0.02562 * 17 16 14 36 36 H 1.07995 * 126.38497 * 180.13951 * 18 17 16 37 37 H 1.09008 * 109.47090 * 89.97910 * 20 19 18 38 38 H 1.08998 * 110.01922 * 6.23483 * 24 12 11 39 39 H 1.09006 * 110.01417 * 127.57841 * 24 12 11 40 40 H 1.09003 * 110.49131 * 143.61587 * 25 24 12 41 41 H 1.09003 * 110.49236 * 266.26618 * 25 24 12 42 42 H 1.08999 * 110.66922 * 80.61953 * 26 25 24 43 43 H 1.09000 * 110.67577 * 203.58903 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3926 2.1071 -1.3949 5 1 1.5041 2.6200 0.8025 6 1 3.5963 1.4122 0.5923 7 6 2.0103 -1.2022 0.0005 8 1 3.0822 -1.2069 -0.1316 9 7 1.3359 -2.3820 0.1687 10 6 -0.0564 -2.5153 0.6326 11 6 -0.1349 -3.9343 1.2479 12 6 0.7766 -4.7439 0.2921 13 7 0.0522 -5.2405 -0.8805 14 6 -0.9865 -6.0848 -0.7230 15 8 -1.3227 -6.4337 0.3919 16 6 -1.7172 -6.5851 -1.9052 17 6 -2.8175 -7.4749 -1.9007 18 6 -3.1530 -7.6420 -3.2015 19 7 -2.2942 -6.9011 -3.9344 20 6 -2.3066 -6.8059 -5.3962 21 9 -1.0066 -6.5767 -5.8596 22 9 -2.7906 -8.0016 -5.9375 23 7 -1.4648 -6.2921 -3.1653 24 6 1.4518 -5.8756 1.0808 25 6 2.9586 -5.5496 1.1203 26 6 3.0181 -4.0129 0.9481 27 6 1.8803 -3.7225 -0.0902 28 1 2.2018 -3.8361 -1.1255 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2784 -1.7614 1.3880 31 1 -0.7462 -2.4270 -0.2068 32 1 0.2605 -3.9415 2.2636 33 1 -1.1570 -4.3126 1.2267 34 1 0.3202 -4.9618 -1.7700 35 1 -3.2918 -7.9236 -1.0405 36 1 -3.9549 -8.2570 -3.5823 37 1 -2.9516 -5.9817 -5.7011 38 1 1.0517 -5.9147 2.0940 39 1 1.2887 -6.8292 0.5786 40 1 3.3875 -5.8431 2.0784 41 1 3.4781 -6.0459 0.3006 42 1 2.8162 -3.5115 1.8947 43 1 3.9862 -3.7073 0.5513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990891857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:07 Heat of formation + Delta-G solvation = -35.143992 kcal Electronic energy + Delta-G solvation = -30328.646148 eV Core-core repulsion = 25853.698978 eV Total energy + Delta-G solvation = -4474.947170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.43857 -48.55133 -43.72994 -41.49777 -39.38071 -36.02118 -34.82090 -33.96485 -33.34612 -31.95408 -31.35323 -28.39010 -28.25906 -27.10108 -25.71598 -24.39781 -22.72097 -22.48370 -21.53375 -20.83301 -20.22078 -19.73204 -19.28553 -18.82477 -18.56208 -18.15269 -17.15699 -16.85886 -16.71835 -16.01601 -15.94587 -15.54039 -15.36816 -15.24554 -15.02821 -14.91940 -14.78823 -14.49638 -14.43882 -14.19283 -13.85351 -13.55599 -13.31895 -13.19163 -12.93808 -12.81656 -12.59732 -12.32989 -12.14097 -12.02784 -11.88811 -11.74856 -11.68209 -11.51485 -11.25046 -11.02981 -10.66109 -10.62858 -10.32198 -9.98042 -8.80754 -7.85000 -5.21585 0.29468 0.74510 1.03688 1.47200 1.48444 1.58047 2.07620 2.30751 2.50893 2.51492 2.79249 3.33284 3.35403 3.48431 3.59238 3.64068 3.75117 3.93741 3.95225 4.07905 4.34804 4.39001 4.46754 4.55966 4.58892 4.63482 4.66627 4.81250 4.88166 4.95536 5.09901 5.12789 5.16968 5.23554 5.32758 5.46095 5.47375 5.55026 5.61041 5.66041 5.72097 6.21921 6.37504 6.67176 7.09293 7.13637 7.78157 8.46231 9.27003 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.003323 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.618848 B = 8424.311269 C = 9550.614351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.975 3.025 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.233 4.233 8 H 0.083 0.917 9 N -0.609 5.609 10 C 0.190 3.810 11 C -0.130 4.130 12 C 0.167 3.833 13 N -0.691 5.691 14 C 0.601 3.399 15 O -0.551 6.551 16 C -0.018 4.018 17 C -0.185 4.185 18 C 0.020 3.980 19 N -0.352 5.352 20 C 0.500 3.500 21 F -0.184 7.184 22 F -0.171 7.171 23 N -0.269 5.269 24 C -0.104 4.104 25 C -0.109 4.109 26 C -0.122 4.122 27 C 0.152 3.848 28 H 0.051 0.949 29 H 0.246 0.754 30 H 0.028 0.972 31 H -0.009 1.009 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.407 0.593 35 H 0.179 0.821 36 H 0.235 0.765 37 H 0.212 0.788 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 -18.654 -9.584 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.362 4.362 8 H 0.100 0.900 9 N -0.333 5.333 10 C 0.064 3.936 11 C -0.170 4.170 12 C 0.081 3.919 13 N -0.340 5.340 14 C 0.386 3.614 15 O -0.428 6.428 16 C -0.180 4.180 17 C -0.213 4.213 18 C -0.120 4.120 19 N -0.150 5.150 20 C 0.369 3.631 21 F -0.165 7.165 22 F -0.152 7.152 23 N -0.103 5.103 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.162 4.162 27 C 0.045 3.955 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.009 0.991 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.243 0.757 35 H 0.197 0.803 36 H 0.251 0.749 37 H 0.228 0.772 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.017 -18.072 -9.682 21.107 hybrid contribution -0.242 0.942 -0.078 0.976 sum -5.259 -17.130 -9.760 20.405 Atomic orbital electron populations 1.70178 1.06532 1.25283 1.57857 1.25680 0.96340 1.01110 1.02537 0.85120 0.77973 0.79409 0.77173 1.21505 1.22377 1.19083 1.19365 0.91299 0.83572 1.41973 0.89964 1.44675 1.10976 1.00865 1.76780 1.21026 0.85499 0.92419 0.94625 1.23167 0.99661 0.95768 0.98384 1.21619 0.91431 0.93397 0.85454 1.45805 1.31972 1.46073 1.10198 1.17099 0.79274 0.78246 0.86814 1.90749 1.67422 1.59647 1.24981 1.22160 1.01333 1.04023 0.90515 1.22144 0.98370 1.02158 0.98599 1.23493 0.99013 0.99245 0.90270 1.47143 1.24106 1.35414 1.08307 1.22302 0.81297 0.86985 0.72476 1.93134 1.41357 1.94586 1.87431 1.93152 1.87482 1.50497 1.84076 1.73561 1.15690 1.19080 1.01973 1.22221 0.95864 0.96383 0.99864 1.22288 0.94756 0.94730 1.02932 1.23093 0.98223 0.96033 0.98843 1.22417 0.92454 0.84018 0.96629 0.93169 0.94517 0.95318 0.99126 0.90562 0.91586 0.75744 0.80343 0.74866 0.77246 0.91032 0.91699 0.89753 0.90428 0.92502 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.04 10.76 21.65 0.23 -57.80 16 2 C -0.06 -3.61 5.40 84.86 0.46 -3.16 16 3 Si 0.97 45.90 29.56 68.60 2.03 47.93 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.23 -12.91 9.99 84.03 0.84 -12.07 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.31 16 9 N -0.61 -31.11 3.04 -659.81 -2.01 -33.12 16 10 C 0.19 9.84 5.38 86.85 0.47 10.31 16 11 C -0.13 -5.51 5.71 31.89 0.18 -5.33 16 12 C 0.17 6.20 0.74 5.19 0.00 6.20 16 13 N -0.69 -24.39 5.22 -418.69 -2.18 -26.58 16 14 C 0.60 20.83 7.02 86.75 0.61 21.43 16 15 O -0.55 -21.12 14.74 -3.94 -0.06 -21.18 16 16 C -0.02 -0.53 7.13 42.46 0.30 -0.23 16 17 C -0.19 -4.05 10.81 22.41 0.24 -3.80 16 18 C 0.02 0.30 10.98 83.54 0.92 1.21 16 19 N -0.35 -6.56 3.68 -364.67 -1.34 -7.90 16 20 C 0.50 5.72 6.56 127.77 0.84 6.56 16 21 F -0.18 -3.32 17.26 44.97 0.78 -2.55 16 22 F -0.17 -1.74 16.96 44.97 0.76 -0.97 16 23 N -0.27 -7.25 11.41 -48.17 -0.55 -7.80 16 24 C -0.10 -3.26 5.30 31.20 0.17 -3.10 16 25 C -0.11 -2.97 6.84 31.60 0.22 -2.75 16 26 C -0.12 -4.22 6.30 32.50 0.20 -4.02 16 27 C 0.15 6.18 3.78 46.96 0.18 6.36 16 28 H 0.05 2.06 7.95 -2.39 -0.02 2.04 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.03 1.66 7.09 -2.38 -0.02 1.64 16 31 H -0.01 -0.54 8.02 -2.39 -0.02 -0.56 16 32 H 0.08 3.09 7.63 -2.39 -0.02 3.07 16 33 H 0.07 2.85 6.53 -2.38 -0.02 2.83 16 34 H 0.41 14.11 8.19 -92.71 -0.76 13.35 16 35 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 36 H 0.24 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.21 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.07 2.25 7.38 -2.39 -0.02 2.23 16 39 H 0.06 1.98 7.60 -2.38 -0.02 1.96 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 2.17 8.11 -2.39 -0.02 2.15 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -75.35 359.22 3.58 -71.76 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.30 Total: 20.59 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 5.62 Total: 17.61 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -5.85 Total: -133.20 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.18 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 1.54 Total: -3.52 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -75.35 3.58 -71.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990891857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.619 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds