Wall clock time and date at job start Sat Apr 11 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99965 * 2 1 4 4 H 1.48498 * 109.46998 * 270.00082 * 3 2 1 5 5 H 1.48497 * 109.46647 * 30.00057 * 3 2 1 6 6 H 1.48498 * 109.46793 * 149.99815 * 3 2 1 7 7 C 1.38819 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99603 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.49296 * 127.10377 * 359.97438 * 9 7 2 11 11 C 1.56237 * 106.50993 * 188.65924 * 10 9 7 12 12 C 1.52136 * 100.80770 * 23.44988 * 11 10 9 13 13 N 1.46497 * 111.09466 * 73.97702 * 12 11 10 14 14 C 1.34778 * 120.00117 * 61.00782 * 13 12 11 15 15 O 1.21610 * 119.99880 * 0.02562 * 14 13 12 16 16 C 1.47429 * 120.00172 * 179.97438 * 14 13 12 17 17 C 1.41297 * 126.41170 * 0.03309 * 16 14 13 18 18 N 1.30451 * 108.01890 * 179.97438 * 17 16 14 19 19 N 1.39928 * 108.89634 * 359.97438 * 18 17 16 20 20 C 1.46508 * 125.75109 * 180.02562 * 19 18 17 21 21 F 1.39897 * 109.46837 * 119.97497 * 20 19 18 22 22 F 1.39902 * 109.46876 * 239.97693 * 20 19 18 23 23 C 1.34258 * 108.49634 * 359.75213 * 19 18 17 24 24 C 1.51233 * 122.09522 * 208.81049 * 12 11 10 25 25 C 1.55692 * 104.60933 * 141.25154 * 24 12 11 26 26 C 1.56284 * 105.93540 * 352.75119 * 25 24 12 27 27 C 1.42704 * 127.10549 * 179.97438 * 9 7 2 28 28 H 1.08996 * 108.15969 * 255.84456 * 27 9 7 29 29 H 0.96997 * 120.00248 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.04803 * 69.40180 * 10 9 7 31 31 H 1.09002 * 110.05140 * 307.92355 * 10 9 7 32 32 H 1.08999 * 111.15052 * 141.33477 * 11 10 9 33 33 H 1.08997 * 111.14870 * 265.56010 * 11 10 9 34 34 H 0.96999 * 119.99849 * 241.00894 * 13 12 11 35 35 H 1.08003 * 125.98783 * 359.96895 * 17 16 14 36 36 H 1.09003 * 109.46594 * 359.97438 * 20 19 18 37 37 H 1.08006 * 126.29154 * 180.24241 * 23 19 18 38 38 H 1.09001 * 110.40842 * 22.46499 * 24 12 11 39 39 H 1.09007 * 110.50681 * 260.08295 * 24 12 11 40 40 H 1.08999 * 110.15628 * 233.63620 * 25 24 12 41 41 H 1.08991 * 110.21864 * 111.89856 * 25 24 12 42 42 H 1.09002 * 110.96729 * 217.62994 * 26 25 24 43 43 H 1.08990 * 110.97217 * 93.85892 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1559 -2.5727 0.0005 11 6 -0.4131 -4.0972 0.2256 12 6 0.8813 -4.5067 0.9121 13 7 0.9173 -4.0299 2.2969 14 6 -0.0157 -4.4442 3.1768 15 8 -0.8873 -5.2142 2.8213 16 6 0.0209 -3.9649 4.5705 17 6 0.9666 -3.0745 5.1266 18 7 0.6623 -2.8952 6.3824 19 7 -0.4761 -3.6504 6.6851 20 6 -1.1350 -3.7196 7.9918 21 9 -2.4553 -3.2728 7.8725 22 9 -1.1295 -5.0423 8.4474 23 6 -0.8664 -4.2963 5.5746 24 6 1.4468 -5.9042 0.7929 25 6 2.9860 -5.6969 0.6828 26 6 3.2033 -4.1543 0.5577 27 6 1.8808 -3.7027 -0.0016 28 1 1.7788 -4.1137 -1.0059 29 1 -0.4850 0.8400 0.0004 30 1 -0.5719 -2.2610 -0.9575 31 1 -0.6039 -1.9948 0.8089 32 1 -1.2720 -4.2592 0.8769 33 1 -0.5374 -4.6193 -0.7231 34 1 1.6127 -3.4160 2.5805 35 1 1.7962 -2.6219 4.6037 36 1 -0.6005 -3.0885 8.7019 37 1 -1.7165 -4.9564 5.4844 38 1 1.0642 -6.3940 -0.1025 39 1 1.2047 -6.4910 1.6791 40 1 3.3708 -6.2035 -0.2022 41 1 3.4818 -6.0747 1.5769 42 1 4.0160 -3.9297 -0.1331 43 1 3.3877 -3.7059 1.5338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992366997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:32 Heat of formation + Delta-G solvation = -25.102974 kcal Electronic energy + Delta-G solvation = -30686.480540 eV Core-core repulsion = 26211.968781 eV Total energy + Delta-G solvation = -4474.511759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.41779 -48.51867 -42.54858 -41.70146 -39.21106 -36.13354 -34.54387 -33.89557 -33.38063 -31.87147 -31.17885 -28.50462 -27.72718 -26.93122 -25.89107 -24.20222 -22.63994 -22.17343 -21.49197 -21.14866 -20.20318 -19.71841 -18.90305 -18.61408 -18.30188 -17.67707 -17.30663 -16.40026 -16.34234 -16.16643 -15.78064 -15.74890 -15.62062 -15.29146 -15.21648 -14.85368 -14.69526 -14.61731 -14.09873 -14.06143 -13.93808 -13.52972 -13.24529 -12.99760 -12.93881 -12.80892 -12.58947 -12.46526 -12.09338 -12.07999 -11.97483 -11.73546 -11.50742 -11.29600 -11.12045 -11.08379 -10.69362 -10.58072 -10.16571 -9.75785 -8.82624 -7.79723 -5.15100 0.20112 0.60490 0.99080 1.50170 1.50974 1.59284 2.27489 2.46518 2.52428 2.54333 3.07557 3.14813 3.40863 3.48111 3.53175 3.68130 3.80730 3.95007 3.96808 4.15539 4.16797 4.32854 4.42696 4.47953 4.56644 4.64148 4.70520 4.87206 5.00938 5.04084 5.12949 5.14884 5.17593 5.29263 5.29647 5.35037 5.54485 5.61043 5.65287 5.72981 5.86543 6.16684 6.22156 6.74650 7.08322 7.39273 7.81646 8.54664 9.32167 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010900 B = 0.003883 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.181144 B = 7209.397029 C = 8649.949925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.062 4.062 3 Si 0.970 3.030 4 H -0.293 1.293 5 H -0.303 1.303 6 H -0.262 1.262 7 C -0.228 4.228 8 H 0.091 0.909 9 N -0.595 5.595 10 C 0.192 3.808 11 C -0.132 4.132 12 C 0.140 3.860 13 N -0.681 5.681 14 C 0.592 3.408 15 O -0.583 6.583 16 C -0.289 4.289 17 C 0.106 3.894 18 N -0.286 5.286 19 N -0.428 5.428 20 C 0.502 3.498 21 F -0.186 7.186 22 F -0.182 7.182 23 C 0.140 3.860 24 C -0.107 4.107 25 C -0.102 4.102 26 C -0.110 4.110 27 C 0.146 3.854 28 H 0.016 0.984 29 H 0.243 0.757 30 H -0.003 1.003 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.403 0.597 35 H 0.216 0.784 36 H 0.209 0.791 37 H 0.203 0.797 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 -11.231 14.274 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.255 4.255 3 Si 0.800 3.200 4 H -0.221 1.221 5 H -0.230 1.230 6 H -0.186 1.186 7 C -0.356 4.356 8 H 0.109 0.891 9 N -0.318 5.318 10 C 0.067 3.933 11 C -0.171 4.171 12 C 0.052 3.948 13 N -0.330 5.330 14 C 0.380 3.620 15 O -0.465 6.465 16 C -0.303 4.303 17 C -0.084 4.084 18 N -0.104 5.104 19 N -0.217 5.217 20 C 0.370 3.630 21 F -0.167 7.167 22 F -0.164 7.164 23 C -0.008 4.008 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.149 4.149 27 C 0.037 3.963 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.015 0.985 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.239 0.761 35 H 0.232 0.768 36 H 0.225 0.775 37 H 0.220 0.780 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.107 -10.969 15.269 19.056 hybrid contribution -0.408 1.143 -1.111 1.645 sum 2.699 -9.826 14.159 17.444 Atomic orbital electron populations 1.70152 1.06466 1.24965 1.58538 1.25541 0.96226 1.00739 1.02984 0.85194 0.77988 0.79742 0.77120 1.22067 1.22975 1.18601 1.19411 0.90930 0.83061 1.42241 0.89085 1.43758 1.01715 1.00444 1.85886 1.21651 0.83530 0.90899 0.97197 1.22671 0.97929 0.96477 0.99998 1.21500 0.96672 0.95258 0.81361 1.45390 1.30438 1.47898 1.09251 1.17358 0.80818 0.79806 0.84054 1.90699 1.37659 1.38075 1.80030 1.20453 1.03265 1.11025 0.95572 1.24591 0.98663 0.94246 0.90931 1.77164 1.00066 1.16118 1.17014 1.49910 1.24208 1.37731 1.09810 1.21600 0.78213 0.80888 0.82336 1.93142 1.38853 1.88917 1.95828 1.93140 1.96385 1.39210 1.87622 1.23286 0.98008 0.94062 0.85400 1.21889 0.96320 0.94030 1.02376 1.22753 0.94158 0.94001 1.03104 1.21868 0.95760 0.96152 1.01074 1.21069 0.94454 0.85202 0.95556 0.96691 0.94779 0.98477 0.95462 0.91574 0.90482 0.76093 0.76789 0.77489 0.78031 0.90218 0.91761 0.89915 0.90088 0.90975 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.43 10.55 21.65 0.23 -56.20 16 2 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 3 Si 0.97 44.16 29.55 68.60 2.03 46.19 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.23 -11.77 10.29 84.04 0.86 -10.90 16 8 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.60 -28.39 3.16 -668.59 -2.11 -30.51 16 10 C 0.19 9.56 5.33 86.96 0.46 10.02 16 11 C -0.13 -5.35 6.08 31.43 0.19 -5.16 16 12 C 0.14 4.85 0.43 4.33 0.00 4.85 16 13 N -0.68 -22.78 4.49 -422.86 -1.90 -24.67 16 14 C 0.59 20.31 7.25 86.66 0.63 20.94 16 15 O -0.58 -22.95 15.11 -4.06 -0.06 -23.01 16 16 C -0.29 -8.36 6.13 -20.15 -0.12 -8.49 16 17 C 0.11 2.68 11.50 85.65 0.99 3.67 16 18 N -0.29 -6.97 12.50 -56.27 -0.70 -7.67 16 19 N -0.43 -9.36 3.84 -363.00 -1.40 -10.76 16 20 C 0.50 7.28 6.37 127.77 0.81 8.09 16 21 F -0.19 -3.26 17.47 44.97 0.79 -2.47 16 22 F -0.18 -2.87 17.47 44.97 0.79 -2.09 16 23 C 0.14 3.52 11.19 84.27 0.94 4.47 16 24 C -0.11 -2.98 6.18 30.95 0.19 -2.79 16 25 C -0.10 -2.33 6.93 32.67 0.23 -2.10 16 26 C -0.11 -3.15 6.47 30.93 0.20 -2.95 16 27 C 0.15 5.48 2.68 46.47 0.12 5.60 16 28 H 0.02 0.61 7.94 -2.39 -0.02 0.60 16 29 H 0.24 14.26 8.31 -92.71 -0.77 13.48 16 30 H 0.00 -0.17 7.98 -2.39 -0.02 -0.19 16 31 H 0.03 1.54 7.05 -2.39 -0.02 1.53 16 32 H 0.07 2.85 6.27 -2.39 -0.01 2.83 16 33 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.40 12.84 6.51 -92.71 -0.60 12.24 16 35 H 0.22 4.53 7.50 -2.91 -0.02 4.51 16 36 H 0.21 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.20 4.45 8.06 -2.91 -0.02 4.42 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.83 7.85 -2.38 -0.02 1.82 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 1.92 7.17 -2.39 -0.02 1.90 16 Total: -1.00 -70.55 359.09 4.09 -66.46 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.46 Total: 22.39 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 5.98 Total: 22.35 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.88 Total: -129.81 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.06 Total: -23.01 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 1.57 Total: -4.56 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -70.55 4.09 -66.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992366997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.360 kcal (2) G-P(sol) polarization free energy of solvation -70.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds