Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 119.99785 * 2 1 4 4 H 1.48507 * 109.47411 * 89.99736 * 3 2 1 5 5 H 1.48501 * 109.47190 * 209.99484 * 3 2 1 6 6 H 1.48500 * 109.47246 * 329.99448 * 3 2 1 7 7 C 1.38807 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99744 * 24.14596 * 7 2 1 9 9 N 1.36930 * 120.00378 * 204.13977 * 7 2 1 10 10 C 1.47377 * 125.57580 * 13.26041 * 9 7 2 11 11 C 1.55089 * 104.70709 * 155.25262 * 10 9 7 12 12 C 1.54920 * 101.67483 * 37.35957 * 11 10 9 13 13 N 1.46497 * 112.33041 * 86.04634 * 12 11 10 14 14 C 1.34771 * 120.00263 * 64.36221 * 13 12 11 15 15 O 1.21606 * 119.99668 * 359.97438 * 14 13 12 16 16 C 1.47432 * 120.00223 * 179.97438 * 14 13 12 17 17 C 1.41289 * 126.41146 * 0.02862 * 16 14 13 18 18 N 1.30453 * 108.02041 * 179.97438 * 17 16 14 19 19 N 1.39936 * 108.89492 * 359.97438 * 18 17 16 20 20 C 1.46500 * 125.74824 * 180.02562 * 19 18 17 21 21 F 1.39892 * 109.47498 * 29.97272 * 20 19 18 22 22 F 1.39905 * 109.47029 * 149.97582 * 20 19 18 23 23 C 1.34255 * 108.49419 * 359.74908 * 19 18 17 24 24 C 1.53580 * 109.57622 * 211.52513 * 12 11 10 25 25 C 1.54219 * 106.67513 * 113.29353 * 24 12 11 26 26 C 1.56743 * 104.51276 * 335.25435 * 25 24 12 27 27 C 1.46976 * 125.58497 * 193.56523 * 9 7 2 28 28 H 1.08996 * 111.81321 * 59.03004 * 27 9 7 29 29 H 0.97003 * 119.99621 * 174.56455 * 1 2 3 30 30 H 1.08997 * 110.36676 * 274.17803 * 10 9 7 31 31 H 1.08997 * 110.36577 * 36.50875 * 10 9 7 32 32 H 1.08999 * 111.15944 * 279.20894 * 11 10 9 33 33 H 1.09004 * 110.90778 * 155.40043 * 11 10 9 34 34 H 0.97010 * 119.99638 * 244.36571 * 13 12 11 35 35 H 1.08002 * 125.98996 * 359.97162 * 17 16 14 36 36 H 1.09001 * 109.47234 * 269.96915 * 20 19 18 37 37 H 1.07999 * 126.29224 * 180.24177 * 23 19 18 38 38 H 1.08999 * 110.01872 * 232.60312 * 24 12 11 39 39 H 1.09000 * 110.01685 * 353.94906 * 24 12 11 40 40 H 1.09007 * 110.49256 * 93.72699 * 25 24 12 41 41 H 1.08998 * 110.49463 * 216.25291 * 25 24 12 42 42 H 1.09003 * 111.09418 * 279.18611 * 26 25 24 43 43 H 1.09000 * 111.12192 * 155.42857 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5477 1.4402 -0.6999 6 1 1.4476 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.5411 -2.0966 -0.3817 9 7 3.2897 -1.2538 0.4855 10 6 3.9494 -0.2010 1.2782 11 6 5.0435 -0.9447 2.0875 12 6 5.5303 -1.9986 1.0617 13 7 6.5724 -1.4735 0.1760 14 6 7.7656 -1.1058 0.6832 15 8 7.9771 -1.2096 1.8763 16 6 8.8145 -0.5778 -0.2082 17 6 8.7156 -0.4000 -1.6063 18 7 9.8479 0.0882 -2.0322 19 7 10.7123 0.2443 -0.9429 20 6 12.0803 0.7651 -1.0036 21 9 12.1856 1.6772 -2.0591 22 9 12.3886 1.4075 0.2004 23 6 10.0747 -0.1581 0.1679 24 6 5.9809 -3.2669 1.8014 25 6 4.9852 -4.3803 1.4176 26 6 3.6762 -3.6161 1.0183 27 6 4.2322 -2.3655 0.2954 28 1 4.4235 -2.5583 -0.7601 29 1 -0.4850 -0.8363 -0.0796 30 1 4.4000 0.5426 0.6209 31 1 3.2343 0.2707 1.9522 32 1 4.6217 -1.4254 2.9702 33 1 5.8514 -0.2670 2.3636 34 1 6.4034 -1.3903 -0.7757 35 1 7.8536 -0.6283 -2.2157 36 1 12.7759 -0.0586 -1.1644 37 1 10.4751 -0.1566 1.1709 38 1 6.9880 -3.5431 1.4891 39 1 5.9572 -3.0992 2.8781 40 1 5.3603 -4.9518 0.5686 41 1 4.8015 -5.0376 2.2675 42 1 3.1052 -3.3282 1.9010 43 1 3.0647 -4.2120 0.3407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992367005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = -16.536472 kcal Electronic energy + Delta-G solvation = -30235.596247 eV Core-core repulsion = 25761.455960 eV Total energy + Delta-G solvation = -4474.140287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.87092 -47.98321 -41.73504 -40.14970 -38.04132 -34.43350 -33.74485 -33.03807 -31.87815 -30.83412 -29.82163 -27.24181 -26.87646 -25.98014 -23.31204 -23.26342 -21.84730 -21.13569 -20.56162 -19.77703 -18.89628 -18.82590 -18.65306 -17.86019 -17.44641 -16.82461 -15.86784 -15.43994 -15.38965 -15.08271 -14.79079 -14.65960 -14.41675 -14.32274 -14.12628 -13.95676 -13.64066 -13.39546 -13.21788 -13.06545 -12.81477 -12.69175 -11.99472 -11.81626 -11.65809 -11.50722 -11.15508 -10.87683 -10.78676 -10.67053 -10.29990 -10.23513 -10.16604 -10.01484 -9.66329 -9.56290 -9.27788 -9.20557 -8.70850 -8.47888 -7.08012 -6.29658 -3.19902 0.97960 1.28881 1.82931 2.91559 3.18895 3.39566 3.44447 3.51694 3.52532 3.67580 3.86801 4.19727 4.41141 4.60380 4.64529 4.84409 4.92834 4.93628 5.14939 5.23432 5.33824 5.51320 5.58730 5.69761 5.73409 5.88271 5.95488 5.98538 6.03220 6.04444 6.13205 6.26739 6.27811 6.39980 6.48862 6.60711 6.66491 6.75981 6.91033 6.96377 7.01124 7.68578 7.74258 8.35343 8.36637 9.05027 9.60405 10.27328 11.17578 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.003265 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.282120 B = 8573.316736 C = 9759.422324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.019 4.019 3 Si 1.064 2.936 4 H -0.295 1.295 5 H -0.288 1.288 6 H -0.301 1.301 7 C -0.323 4.323 8 H 0.076 0.924 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.127 4.127 12 C 0.163 3.837 13 N -0.702 5.702 14 C 0.594 3.406 15 O -0.542 6.542 16 C -0.272 4.272 17 C 0.097 3.903 18 N -0.275 5.275 19 N -0.433 5.433 20 C 0.512 3.488 21 F -0.170 7.170 22 F -0.178 7.178 23 C 0.140 3.860 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.125 4.125 27 C 0.160 3.840 28 H 0.051 0.949 29 H 0.262 0.738 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.400 0.600 35 H 0.200 0.800 36 H 0.160 0.840 37 H 0.196 0.804 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.679 -3.973 -0.971 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.220 4.220 3 Si 0.897 3.103 4 H -0.223 1.223 5 H -0.215 1.215 6 H -0.229 1.229 7 C -0.450 4.450 8 H 0.093 0.907 9 N -0.327 5.327 10 C -0.021 4.021 11 C -0.167 4.167 12 C 0.077 3.923 13 N -0.351 5.351 14 C 0.380 3.620 15 O -0.420 6.420 16 C -0.286 4.286 17 C -0.093 4.093 18 N -0.093 5.093 19 N -0.223 5.223 20 C 0.379 3.621 21 F -0.151 7.151 22 F -0.160 7.160 23 C -0.007 4.007 24 C -0.147 4.147 25 C -0.164 4.164 26 C -0.165 4.165 27 C 0.053 3.947 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.234 0.766 35 H 0.217 0.783 36 H 0.176 0.824 37 H 0.213 0.787 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 25.367 -1.879 -1.119 25.461 hybrid contribution -0.325 -1.565 0.055 1.600 sum 25.043 -3.445 -1.065 25.301 Atomic orbital electron populations 1.70908 1.05819 1.29974 1.49627 1.25827 0.96392 1.00766 0.98977 0.83842 0.74128 0.76123 0.76224 1.22274 1.21478 1.22873 1.19999 0.87005 0.96410 1.41630 0.90656 1.44848 1.11193 1.16105 1.60535 1.22101 0.93970 0.92457 0.93561 1.23101 0.98331 0.97995 0.97244 1.21615 0.86420 0.93565 0.90714 1.45706 1.12890 1.65061 1.11445 1.17070 0.81117 0.77001 0.86802 1.90773 1.80765 1.55327 1.15184 1.20507 0.96625 1.17247 0.94225 1.24372 0.96175 0.94900 0.93818 1.77339 1.01286 1.22722 1.07918 1.49794 1.13506 1.51667 1.07296 1.21336 0.81693 0.86708 0.72404 1.93144 1.95329 1.69629 1.57005 1.93156 1.91912 1.84052 1.46861 1.22950 0.91843 0.93184 0.92695 1.22214 0.98602 0.93552 1.00344 1.22704 0.96069 0.97215 1.00391 1.23195 0.95796 0.96524 1.00963 1.21829 0.87131 0.89787 0.96002 0.93187 0.92725 0.95278 0.92182 0.90390 0.90755 0.76575 0.78346 0.82361 0.78714 0.91918 0.91012 0.92245 0.92105 0.90671 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.51 13.70 55.49 0.76 -27.75 16 2 C -0.02 -0.55 5.42 -17.43 -0.09 -0.65 16 3 Si 1.06 26.64 24.68 -169.99 -4.20 22.44 16 4 H -0.29 -7.12 6.61 56.52 0.37 -6.74 16 5 H -0.29 -6.79 6.20 56.52 0.35 -6.44 16 6 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 7 C -0.32 -8.84 10.16 -15.06 -0.15 -9.00 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 9 N -0.60 -13.92 2.90 -160.99 -0.47 -14.39 16 10 C 0.10 2.26 4.70 -2.46 -0.01 2.25 16 11 C -0.13 -2.32 5.80 -24.61 -0.14 -2.46 16 12 C 0.16 2.65 0.73 -129.37 -0.09 2.55 16 13 N -0.70 -9.90 5.22 -46.41 -0.24 -10.15 16 14 C 0.59 8.33 6.96 -12.52 -0.09 8.24 16 15 O -0.54 -8.95 14.77 5.27 0.08 -8.88 16 16 C -0.27 -3.13 6.13 -105.07 -0.64 -3.78 16 17 C 0.10 1.01 11.50 -16.98 -0.20 0.82 16 18 N -0.27 -3.07 12.32 30.86 0.38 -2.69 16 19 N -0.43 -4.04 3.94 -66.10 -0.26 -4.30 16 20 C 0.51 3.17 6.62 59.85 0.40 3.57 16 21 F -0.17 -1.45 17.35 2.25 0.04 -1.41 16 22 F -0.18 -1.22 16.99 2.25 0.04 -1.18 16 23 C 0.14 1.37 10.84 -16.56 -0.18 1.19 16 24 C -0.11 -1.58 5.25 -25.79 -0.14 -1.72 16 25 C -0.13 -1.73 6.88 -24.07 -0.17 -1.90 16 26 C -0.12 -2.15 6.38 -23.77 -0.15 -2.30 16 27 C 0.16 2.99 3.59 -65.60 -0.24 2.75 16 28 H 0.05 0.92 7.98 -51.93 -0.41 0.51 16 29 H 0.26 8.01 8.73 -40.82 -0.36 7.65 16 30 H 0.03 0.65 5.59 -51.93 -0.29 0.36 16 31 H 0.06 1.41 6.20 -51.93 -0.32 1.09 16 32 H 0.08 1.39 7.65 -51.93 -0.40 0.99 16 33 H 0.07 1.34 6.82 -51.93 -0.35 0.98 16 34 H 0.40 4.92 7.45 -40.82 -0.30 4.61 16 35 H 0.20 1.54 7.50 -52.49 -0.39 1.15 16 36 H 0.16 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.06 0.90 7.40 -51.93 -0.38 0.51 16 39 H 0.07 1.07 7.41 -51.93 -0.38 0.69 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -34.45 352.26 -5.89 -40.34 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.43 Total: 3.08 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.89 Total: -0.43 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.17 Total: -59.27 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.08 Total: -2.60 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -4.20 Total: 22.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.45 -5.89 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992367005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.802 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds