Wall clock time and date at job start Sat Apr 11 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38073 * 126.27734 * 2 1 4 4 C 1.47382 * 126.42514 * 0.02562 * 3 2 1 5 5 O 1.21613 * 119.99937 * 269.71539 * 4 3 2 6 6 N 1.34773 * 120.00126 * 89.98738 * 4 3 2 7 7 C 1.46500 * 120.00431 * 179.72665 * 6 4 3 8 8 C 1.52999 * 109.46961 * 275.00501 * 7 6 4 9 9 C 1.52998 * 109.47294 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47184 * 59.99536 * 9 8 7 11 11 N 1.46505 * 109.47216 * 180.02562 * 10 9 8 12 12 C 1.36932 * 119.99648 * 275.00158 * 11 10 9 13 13 H 1.07998 * 120.00298 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99562 * 179.97438 * 12 11 10 15 15 N 1.31623 * 119.99900 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00289 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47445 * 89.99305 * 16 14 12 18 18 H 1.48503 * 109.47311 * 209.99748 * 16 14 12 19 19 H 1.48505 * 109.46577 * 329.99267 * 16 14 12 20 20 C 1.52999 * 109.46873 * 300.00263 * 10 9 8 21 21 C 1.52995 * 109.47327 * 155.00306 * 7 6 4 22 22 C 1.41388 * 107.15354 * 179.74031 * 3 2 1 23 23 Cl 1.73607 * 126.00696 * 180.29853 * 22 3 2 24 24 N 1.30531 * 107.99169 * 0.25695 * 22 3 2 25 25 N 1.34236 * 126.28730 * 180.19312 * 2 1 3 26 26 C 1.46500 * 125.73524 * 359.97438 * 25 2 1 27 27 H 1.08993 * 109.47046 * 90.00255 * 1 2 3 28 28 H 1.09007 * 109.46802 * 209.99960 * 1 2 3 29 29 H 1.09001 * 109.47563 * 329.99588 * 1 2 3 30 30 H 0.97000 * 120.00112 * 359.73102 * 6 4 3 31 31 H 1.09002 * 109.46905 * 34.99910 * 7 6 4 32 32 H 1.08999 * 109.47539 * 299.99611 * 8 7 6 33 33 H 1.08995 * 109.47658 * 59.99810 * 8 7 6 34 34 H 1.09007 * 109.47310 * 300.00235 * 9 8 7 35 35 H 1.09001 * 109.47442 * 179.97438 * 9 8 7 36 36 H 1.08994 * 109.46976 * 60.00471 * 10 9 8 37 37 H 0.96994 * 120.00008 * 95.00001 * 11 10 9 38 38 H 0.96998 * 119.99903 * 180.02562 * 15 14 12 39 39 H 1.08993 * 109.47372 * 299.99354 * 20 10 9 40 40 H 1.09002 * 109.46874 * 179.97438 * 20 10 9 41 41 H 1.08999 * 109.47405 * 299.99754 * 21 7 6 42 42 H 1.08994 * 109.47294 * 60.00193 * 21 7 6 43 43 H 1.09002 * 109.46656 * 270.29315 * 26 25 2 44 44 H 1.09000 * 109.47261 * 30.28783 * 26 25 2 45 45 H 1.08993 * 109.47390 * 150.29263 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1131 0.0000 4 6 1.8857 2.5203 0.0005 5 8 1.7095 3.1026 -1.0524 6 7 1.6855 3.1633 1.1679 7 6 1.2557 4.5638 1.1685 8 6 2.4801 5.4731 1.0463 9 6 2.0313 6.9357 1.0462 10 6 1.2957 7.2435 2.3521 11 7 0.8654 8.6440 2.3519 12 6 1.7286 9.6255 2.7599 13 1 2.7268 9.3673 3.0815 14 6 1.3210 10.9524 2.7591 15 7 2.1506 11.8959 3.1518 16 14 -0.4051 11.3990 2.2022 17 1 -1.3232 11.3765 3.3692 18 1 -0.3965 12.7588 1.6053 19 1 -0.8680 10.4167 1.1892 20 6 0.0713 6.3342 2.4743 21 6 0.5206 4.8712 2.4746 22 6 3.6598 0.6499 0.0061 23 17 5.0841 1.6424 0.0160 24 7 3.6340 -0.6552 0.0040 25 7 2.3014 -1.0820 -0.0036 26 6 1.8493 -2.4755 -0.0078 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.8261 2.6988 2.0078 31 1 0.5874 4.7391 0.3255 32 1 3.1485 5.2978 1.8892 33 1 3.0039 5.2542 0.1158 34 1 1.3630 7.1108 0.2030 35 1 2.9036 7.5835 0.9596 36 1 1.9638 7.0686 3.1953 37 1 -0.0309 8.8758 2.0626 38 1 1.8656 12.8231 3.1517 39 1 -0.5968 6.5093 1.6311 40 1 -0.4524 6.5532 3.4048 41 1 -0.3517 4.2234 2.5618 42 1 1.1889 4.6959 3.3176 43 1 1.7325 -2.8226 1.0189 44 1 0.8929 -2.5456 -0.5260 45 1 2.5859 -3.0950 -0.5192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026599118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:30 Heat of formation + Delta-G solvation = 35.427580 kcal Electronic energy + Delta-G solvation = -27161.748829 eV Core-core repulsion = 23241.658552 eV Total energy + Delta-G solvation = -3920.090277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.95326 -39.72853 -37.90248 -37.13314 -34.90850 -33.95348 -33.13744 -32.51610 -30.91813 -30.43699 -28.55025 -27.41368 -27.13546 -23.69147 -22.65751 -22.33030 -21.20221 -20.72138 -20.18138 -19.53600 -17.97011 -17.39947 -16.68200 -16.48087 -16.02671 -15.43333 -15.03970 -14.87292 -14.48257 -14.06796 -13.87486 -13.81565 -13.70523 -13.58696 -13.36892 -13.20839 -12.89751 -12.85662 -12.60116 -12.14654 -11.97419 -11.94761 -11.93361 -11.70727 -11.15586 -11.03762 -10.85328 -10.84851 -10.63744 -10.23560 -10.15796 -9.91621 -9.78250 -9.68471 -9.53288 -9.05545 -8.96952 -8.84076 -7.21549 -5.72689 -3.07680 1.01897 1.09605 1.82171 2.22126 2.46055 3.21557 3.40912 3.43968 3.48654 3.92495 4.04471 4.45834 4.52830 4.63145 4.68877 4.78515 4.86561 4.90736 4.92356 5.01672 5.15776 5.24829 5.25627 5.50066 5.52605 5.57533 5.59500 5.66671 5.81438 5.84240 5.97913 6.14384 6.21753 6.24091 6.24995 6.41865 6.50452 6.59814 6.69361 6.89234 6.94860 7.10227 7.45973 8.04527 8.17099 8.46738 9.25719 9.98434 10.18510 11.45798 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022561 B = 0.002344 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.776402 B =11943.204095 C =12721.683048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.137 3.863 3 C -0.271 4.271 4 C 0.597 3.403 5 O -0.525 6.525 6 N -0.715 5.715 7 C 0.145 3.855 8 C -0.125 4.125 9 C -0.132 4.132 10 C 0.181 3.819 11 N -0.750 5.750 12 C -0.240 4.240 13 H 0.090 0.910 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.884 3.116 17 H -0.285 1.285 18 H -0.292 1.292 19 H -0.277 1.277 20 C -0.124 4.124 21 C -0.118 4.118 22 C 0.157 3.843 23 Cl 0.023 6.977 24 N -0.280 5.280 25 N -0.350 5.350 26 C 0.096 3.904 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.399 0.601 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 -33.011 -4.407 33.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.006 3.994 3 C -0.286 4.286 4 C 0.381 3.619 5 O -0.401 6.401 6 N -0.365 5.365 7 C 0.041 3.959 8 C -0.164 4.164 9 C -0.173 4.173 10 C 0.072 3.928 11 N -0.392 5.392 12 C -0.370 4.370 13 H 0.108 0.892 14 C -0.194 4.194 15 N -0.583 5.583 16 Si 0.715 3.285 17 H -0.212 1.212 18 H -0.219 1.219 19 H -0.203 1.203 20 C -0.162 4.162 21 C -0.157 4.157 22 C -0.035 4.035 23 Cl 0.051 6.949 24 N -0.105 5.105 25 N -0.132 5.132 26 C -0.044 4.044 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.232 0.768 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.060 -33.550 -5.077 34.070 hybrid contribution -1.215 0.938 -0.052 1.536 sum -4.275 -32.613 -5.129 33.289 Atomic orbital electron populations 1.20611 0.85767 1.04755 1.04552 1.21390 0.94857 0.85547 0.97596 1.19822 0.91171 0.94458 1.23193 1.17091 0.76736 0.84082 0.84039 1.90818 1.50304 1.67592 1.31348 1.46147 1.68945 1.13338 1.08057 1.21148 0.96610 0.78907 0.99216 1.21897 0.96894 0.95737 1.01871 1.22185 1.01418 0.93456 1.00234 1.20225 0.93289 0.83961 0.95318 1.42798 1.14250 1.02003 1.80116 1.19083 0.96122 0.86079 1.35690 0.89234 1.24681 0.97519 0.95650 1.01510 1.69706 1.34948 0.99895 1.53798 0.86545 0.85873 0.77543 0.78557 1.21185 1.21857 1.20273 1.21797 0.99158 0.93109 1.02181 1.21740 0.99775 0.97601 0.96538 1.22566 0.88882 0.90474 1.01571 1.98440 1.35166 1.64578 1.96705 1.77195 0.96631 1.10637 1.26005 1.48067 1.02814 1.06585 1.55702 1.22054 1.01503 0.76670 1.04196 0.88958 0.90047 0.88864 0.76761 0.89366 0.92025 0.92066 0.92610 0.91329 0.92680 0.80725 0.93145 0.92087 0.91306 0.91825 0.91309 0.89846 0.88722 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 9.70 36.00 0.35 -0.11 16 2 C 0.14 1.14 7.01 -81.60 -0.57 0.57 16 3 C -0.27 -3.07 5.88 -105.04 -0.62 -3.69 16 4 C 0.60 7.70 7.13 -12.54 -0.09 7.61 16 5 O -0.53 -8.89 16.77 5.27 0.09 -8.80 16 6 N -0.71 -7.75 5.07 -54.90 -0.28 -8.03 16 7 C 0.14 1.81 2.45 -67.93 -0.17 1.65 16 8 C -0.12 -1.83 5.49 -26.73 -0.15 -1.98 16 9 C -0.13 -2.34 5.50 -26.73 -0.15 -2.49 16 10 C 0.18 3.38 2.77 -67.92 -0.19 3.19 16 11 N -0.75 -17.59 4.92 -53.42 -0.26 -17.85 16 12 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 13 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 14 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 15 N -0.94 -29.58 13.97 55.49 0.78 -28.81 16 16 Si 0.88 22.27 27.74 -169.99 -4.71 17.55 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 19 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 20 C -0.12 -1.80 5.39 -26.70 -0.14 -1.94 16 21 C -0.12 -1.32 5.39 -26.71 -0.14 -1.47 16 22 C 0.16 1.88 7.89 -16.91 -0.13 1.75 16 23 Cl 0.02 0.27 29.19 -51.86 -1.51 -1.24 16 24 N -0.28 -3.14 12.50 33.18 0.41 -2.72 16 25 N -0.35 -2.79 3.98 -63.34 -0.25 -3.05 16 26 C 0.10 0.28 11.05 59.85 0.66 0.94 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.15 7.71 -51.93 -0.40 -0.25 16 29 H 0.09 0.47 7.96 -51.93 -0.41 0.06 16 30 H 0.40 3.37 8.59 -40.82 -0.35 3.02 16 31 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.36 8.33 5.66 -40.82 -0.23 8.10 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.09 0.05 7.64 -51.93 -0.40 -0.35 16 45 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 385.59 15.07 5.81 5.81 Total: -1.00 -36.31 385.59 -8.37 -44.68 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.85 Total: 5.37 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.59 Total: -2.92 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.40 Total: -60.46 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.51 Total: -1.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.31 -8.37 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026599118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.109 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds