Wall clock time and date at job start Sat Apr 11 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38073 * 126.27734 * 2 1 4 4 C 1.47382 * 126.42514 * 0.02562 * 3 2 1 5 5 O 1.21613 * 119.99937 * 269.71539 * 4 3 2 6 6 N 1.34773 * 120.00126 * 89.98738 * 4 3 2 7 7 C 1.46500 * 120.00431 * 179.72665 * 6 4 3 8 8 C 1.52999 * 109.46961 * 275.00501 * 7 6 4 9 9 C 1.52998 * 109.47294 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47184 * 59.99536 * 9 8 7 11 11 N 1.46505 * 109.47216 * 180.02562 * 10 9 8 12 12 C 1.36932 * 119.99648 * 275.00158 * 11 10 9 13 13 H 1.07998 * 120.00298 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99562 * 179.97438 * 12 11 10 15 15 N 1.31623 * 119.99900 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00289 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47445 * 89.99305 * 16 14 12 18 18 H 1.48503 * 109.47311 * 209.99748 * 16 14 12 19 19 H 1.48505 * 109.46577 * 329.99267 * 16 14 12 20 20 C 1.52999 * 109.46873 * 300.00263 * 10 9 8 21 21 C 1.52995 * 109.47327 * 155.00306 * 7 6 4 22 22 C 1.41388 * 107.15354 * 179.74031 * 3 2 1 23 23 Cl 1.73607 * 126.00696 * 180.29853 * 22 3 2 24 24 N 1.30531 * 107.99169 * 0.25695 * 22 3 2 25 25 N 1.34236 * 126.28730 * 180.19312 * 2 1 3 26 26 C 1.46500 * 125.73524 * 359.97438 * 25 2 1 27 27 H 1.08993 * 109.47046 * 90.00255 * 1 2 3 28 28 H 1.09007 * 109.46802 * 209.99960 * 1 2 3 29 29 H 1.09001 * 109.47563 * 329.99588 * 1 2 3 30 30 H 0.97000 * 120.00112 * 359.73102 * 6 4 3 31 31 H 1.09002 * 109.46905 * 34.99910 * 7 6 4 32 32 H 1.08999 * 109.47539 * 299.99611 * 8 7 6 33 33 H 1.08995 * 109.47658 * 59.99810 * 8 7 6 34 34 H 1.09007 * 109.47310 * 300.00235 * 9 8 7 35 35 H 1.09001 * 109.47442 * 179.97438 * 9 8 7 36 36 H 1.08994 * 109.46976 * 60.00471 * 10 9 8 37 37 H 0.96994 * 120.00008 * 95.00001 * 11 10 9 38 38 H 0.96998 * 119.99903 * 180.02562 * 15 14 12 39 39 H 1.08993 * 109.47372 * 299.99354 * 20 10 9 40 40 H 1.09002 * 109.46874 * 179.97438 * 20 10 9 41 41 H 1.08999 * 109.47405 * 299.99754 * 21 7 6 42 42 H 1.08994 * 109.47294 * 60.00193 * 21 7 6 43 43 H 1.09002 * 109.46656 * 270.29315 * 26 25 2 44 44 H 1.09000 * 109.47261 * 30.28783 * 26 25 2 45 45 H 1.08993 * 109.47390 * 150.29263 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1131 0.0000 4 6 1.8857 2.5203 0.0005 5 8 1.7095 3.1026 -1.0524 6 7 1.6855 3.1633 1.1679 7 6 1.2557 4.5638 1.1685 8 6 2.4801 5.4731 1.0463 9 6 2.0313 6.9357 1.0462 10 6 1.2957 7.2435 2.3521 11 7 0.8654 8.6440 2.3519 12 6 1.7286 9.6255 2.7599 13 1 2.7268 9.3673 3.0815 14 6 1.3210 10.9524 2.7591 15 7 2.1506 11.8959 3.1518 16 14 -0.4051 11.3990 2.2022 17 1 -1.3232 11.3765 3.3692 18 1 -0.3965 12.7588 1.6053 19 1 -0.8680 10.4167 1.1892 20 6 0.0713 6.3342 2.4743 21 6 0.5206 4.8712 2.4746 22 6 3.6598 0.6499 0.0061 23 17 5.0841 1.6424 0.0160 24 7 3.6340 -0.6552 0.0040 25 7 2.3014 -1.0820 -0.0036 26 6 1.8493 -2.4755 -0.0078 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.8261 2.6988 2.0078 31 1 0.5874 4.7391 0.3255 32 1 3.1485 5.2978 1.8892 33 1 3.0039 5.2542 0.1158 34 1 1.3630 7.1108 0.2030 35 1 2.9036 7.5835 0.9596 36 1 1.9638 7.0686 3.1953 37 1 -0.0309 8.8758 2.0626 38 1 1.8656 12.8231 3.1517 39 1 -0.5968 6.5093 1.6311 40 1 -0.4524 6.5532 3.4048 41 1 -0.3517 4.2234 2.5618 42 1 1.1889 4.6959 3.3176 43 1 1.7325 -2.8226 1.0189 44 1 0.8929 -2.5456 -0.5260 45 1 2.5859 -3.0950 -0.5192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026599118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:29 Heat of formation + Delta-G solvation = 9.143851 kcal Electronic energy + Delta-G solvation = -27162.888577 eV Core-core repulsion = 23241.658552 eV Total energy + Delta-G solvation = -3921.230025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.65255 -40.78955 -39.17773 -37.98027 -36.42411 -34.66810 -34.48446 -33.36709 -32.65497 -31.66552 -29.62795 -28.31726 -27.69084 -25.33370 -23.89729 -23.49207 -22.26334 -21.68660 -21.24615 -20.72053 -19.55769 -18.62834 -17.52177 -17.26253 -16.84182 -16.69369 -16.23848 -16.02935 -15.80972 -15.29036 -15.01403 -14.87898 -14.66101 -14.33366 -14.24491 -14.18563 -14.03097 -13.68992 -13.58263 -13.34923 -13.21617 -13.07189 -12.88187 -12.69652 -12.59945 -12.40030 -12.28967 -12.02646 -11.97827 -11.87010 -11.77115 -11.45001 -11.18465 -11.03618 -10.85077 -10.35458 -10.02915 -9.78088 -9.27207 -7.99594 -5.32290 0.28867 0.45730 1.00702 1.39436 1.43290 1.48021 1.50513 1.63676 2.29484 2.51153 3.31135 3.38799 3.57587 3.63659 3.77819 3.88717 3.95823 4.07454 4.28683 4.36097 4.38477 4.39394 4.40587 4.55463 4.60780 4.61765 4.66146 4.69025 4.77057 4.78672 4.89601 4.97240 5.00769 5.15192 5.17997 5.27372 5.30004 5.50290 5.54513 5.63522 5.75564 5.81219 6.18791 6.25235 6.56467 7.11661 7.23971 7.88978 8.07990 9.22207 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022561 B = 0.002344 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.776402 B =11943.204095 C =12721.683048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.155 3.845 3 C -0.303 4.303 4 C 0.604 3.396 5 O -0.572 6.572 6 N -0.699 5.699 7 C 0.153 3.847 8 C -0.116 4.116 9 C -0.124 4.124 10 C 0.174 3.826 11 N -0.753 5.753 12 C -0.225 4.225 13 H 0.054 0.946 14 C -0.070 4.070 15 N -0.987 5.987 16 Si 0.957 3.043 17 H -0.275 1.275 18 H -0.300 1.300 19 H -0.252 1.252 20 C -0.116 4.116 21 C -0.106 4.106 22 C 0.142 3.858 23 Cl 0.009 6.991 24 N -0.305 5.305 25 N -0.341 5.341 26 C 0.082 3.918 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.414 0.586 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.365 0.635 38 H 0.256 0.744 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.256 -36.494 -4.130 37.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.022 3.978 3 C -0.319 4.319 4 C 0.389 3.611 5 O -0.451 6.451 6 N -0.349 5.349 7 C 0.049 3.951 8 C -0.155 4.155 9 C -0.164 4.164 10 C 0.067 3.933 11 N -0.395 5.395 12 C -0.356 4.356 13 H 0.072 0.928 14 C -0.261 4.261 15 N -0.638 5.638 16 Si 0.785 3.215 17 H -0.201 1.201 18 H -0.227 1.227 19 H -0.177 1.177 20 C -0.154 4.154 21 C -0.144 4.144 22 C -0.050 4.050 23 Cl 0.037 6.963 24 N -0.131 5.131 25 N -0.122 5.122 26 C -0.056 4.056 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.111 0.889 30 H 0.250 0.750 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.198 0.802 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.122 0.878 44 H 0.145 0.855 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.398 -37.139 -4.774 37.987 hybrid contribution -0.095 1.864 -0.135 1.872 sum -6.494 -35.274 -4.909 36.201 Atomic orbital electron populations 1.20818 0.82800 1.06539 1.05524 1.21894 0.96312 0.84600 0.94995 1.19771 0.91484 0.94339 1.26276 1.17289 0.75617 0.84613 0.83578 1.90793 1.52462 1.68793 1.33016 1.45947 1.68022 1.12470 1.08435 1.20938 0.95112 0.79246 0.99850 1.21779 0.98166 0.94172 1.01386 1.22007 0.99774 0.95012 0.99641 1.20488 0.95442 0.82467 0.94953 1.42833 1.13732 1.03107 1.79866 1.19029 0.95313 0.87318 1.33973 0.92842 1.25546 1.02318 0.95579 1.02669 1.69899 1.37510 1.00188 1.56193 0.85371 0.80326 0.77076 0.78772 1.20068 1.22687 1.17676 1.21701 0.96885 0.94032 1.02811 1.21668 1.01202 0.95735 0.95787 1.22630 0.88754 0.90866 1.02708 1.98423 1.36030 1.65063 1.96829 1.77114 0.98966 1.10243 1.26729 1.48503 1.01621 1.08232 1.53855 1.22567 1.02917 0.74010 1.06127 0.88193 0.86416 0.88941 0.74960 0.90562 0.91323 0.93610 0.93097 0.94797 0.93729 0.80166 0.93505 0.91576 0.90526 0.88319 0.89975 0.87773 0.85546 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 9.70 71.23 0.69 0.17 16 2 C 0.15 2.16 7.01 42.15 0.30 2.46 16 3 C -0.30 -6.51 5.88 -20.13 -0.12 -6.63 16 4 C 0.60 15.02 7.13 86.65 0.62 15.64 16 5 O -0.57 -19.37 16.77 -4.07 -0.07 -19.43 16 6 N -0.70 -13.81 5.07 -445.85 -2.26 -16.07 16 7 C 0.15 3.55 2.45 44.99 0.11 3.66 16 8 C -0.12 -3.39 5.49 30.59 0.17 -3.22 16 9 C -0.12 -4.47 5.50 30.60 0.17 -4.30 16 10 C 0.17 6.40 2.77 44.99 0.12 6.52 16 11 N -0.75 -35.09 4.92 -322.93 -1.59 -36.68 16 12 C -0.23 -13.00 10.41 84.03 0.87 -12.13 16 13 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 14 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 15 N -0.99 -64.49 13.97 21.65 0.30 -64.18 16 16 Si 0.96 46.14 27.74 68.60 1.90 48.04 16 17 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 19 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 20 C -0.12 -3.04 5.39 30.61 0.17 -2.88 16 21 C -0.11 -1.99 5.39 30.61 0.17 -1.83 16 22 C 0.14 3.34 7.89 85.66 0.68 4.02 16 23 Cl 0.01 0.21 29.19 -2.72 -0.08 0.13 16 24 N -0.31 -6.53 12.50 -48.95 -0.61 -7.14 16 25 N -0.34 -4.55 3.98 -354.31 -1.41 -5.96 16 26 C 0.08 0.18 11.05 127.77 1.41 1.59 16 27 H 0.10 0.47 8.14 -2.39 -0.02 0.46 16 28 H 0.12 -0.21 7.71 -2.38 -0.02 -0.23 16 29 H 0.09 0.58 7.96 -2.39 -0.02 0.56 16 30 H 0.41 5.85 8.59 -92.71 -0.80 5.06 16 31 H 0.08 2.04 7.58 -2.39 -0.02 2.02 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.73 8.08 -2.39 -0.02 1.72 16 37 H 0.37 16.24 5.66 -92.71 -0.52 15.72 16 38 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.13 -0.49 7.64 -2.39 -0.02 -0.51 16 45 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -83.73 385.59 1.64 -82.09 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.36 Total: 19.88 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.82 Total: -0.66 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -5.57 Total: -130.04 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.07 Total: -19.43 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.90 Total: 48.04 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -0.08 Total: 0.13 kcal Total: -83.73 1.64 -82.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026599118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.235 kcal (2) G-P(sol) polarization free energy of solvation -83.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds